Wall clock time and date at job start Mon Mar 30 2020 06:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46581 * 2 1 4 4 C 1.50696 * 109.46799 * 119.99579 * 2 1 3 5 5 H 1.08008 * 119.99889 * 120.00491 * 4 2 1 6 6 C 1.37879 * 120.00544 * 300.00119 * 4 2 1 7 7 N 1.31505 * 120.00315 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99600 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47016 * 90.00187 * 8 6 4 10 10 H 1.48501 * 109.46810 * 209.99771 * 8 6 4 11 11 H 1.48499 * 109.47184 * 329.99793 * 8 6 4 12 12 S 1.81400 * 109.47094 * 239.99855 * 2 1 3 13 13 O 1.42107 * 109.46486 * 164.05614 * 12 2 1 14 14 C 1.76201 * 103.00011 * 55.00160 * 12 2 1 15 15 C 1.38233 * 120.00712 * 95.00000 * 14 12 2 16 16 C 1.38222 * 120.01182 * 179.97438 * 15 14 12 17 17 C 1.38258 * 120.02654 * 359.95719 * 16 15 14 18 18 C 1.38195 * 120.01593 * 0.02562 * 17 16 15 19 19 C 1.38328 * 120.00477 * 274.95082 * 14 12 2 20 20 Cl 1.73607 * 120.01190 * 0.05008 * 19 14 12 21 21 H 1.08999 * 109.47625 * 300.00336 * 1 2 3 22 22 H 1.09008 * 109.47225 * 60.00324 * 1 2 3 23 23 H 1.09001 * 109.47300 * 180.02562 * 1 2 3 24 24 H 0.96994 * 120.00460 * 180.02562 * 7 6 4 25 25 H 1.08003 * 119.99514 * 359.97336 * 15 14 12 26 26 H 1.08001 * 119.98363 * 179.97438 * 16 15 14 27 27 H 1.07995 * 119.99588 * 180.02562 * 17 16 15 28 28 H 1.07992 * 120.00897 * 179.73075 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 2.1379 -0.8589 3.5566 8 14 0.6246 1.2791 2.6541 9 1 -0.8029 0.8727 2.6998 10 1 0.9757 1.9952 3.9068 11 1 0.8469 2.1765 1.4920 12 16 2.1346 -0.8552 -1.4811 13 8 3.5071 -0.5449 -1.6799 14 6 1.3384 0.0118 -2.7922 15 6 1.9935 1.0448 -3.4361 16 6 1.3692 1.7246 -4.4650 17 6 0.0895 1.3713 -4.8513 18 6 -0.5664 0.3386 -4.2086 19 6 0.0579 -0.3418 -3.1780 20 17 -0.7655 -1.6390 -2.3697 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 1.9032 -0.5277 4.4375 25 1 2.9934 1.3207 -3.1352 26 1 1.8813 2.5318 -4.9675 27 1 -0.3977 1.9026 -5.6555 28 1 -1.5675 0.0657 -4.5075 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082788147.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:15 Heat of formation + Delta-G solvation = -14.783680 kcal Electronic energy + Delta-G solvation = -15056.417343 eV Core-core repulsion = 12418.231347 eV Total energy + Delta-G solvation = -2638.185996 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.06008 -36.43069 -34.95402 -34.07612 -31.41219 -30.90502 -30.56858 -25.25519 -22.90691 -22.63924 -21.63725 -18.10065 -16.85280 -16.53463 -15.56039 -15.38788 -15.15296 -14.23469 -13.86376 -13.77152 -13.58669 -13.12924 -12.46725 -12.27816 -11.94932 -11.61408 -11.54216 -11.25931 -10.97298 -10.90366 -10.79947 -10.21323 -9.80774 -9.41372 -9.27487 -9.08237 -8.71269 -8.68388 -7.47266 -6.20348 -4.24978 0.95398 1.23443 2.11038 2.51854 3.20110 3.32048 3.33994 3.39806 3.75634 4.31805 4.53306 4.84001 4.92498 5.12378 5.16933 5.41997 5.61118 5.83677 6.09186 6.15987 6.22783 6.24885 6.34641 6.34903 6.75012 6.77734 7.06612 7.46467 8.19385 8.74015 9.38956 10.90853 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.025940 B = 0.008275 C = 0.007926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.165499 B = 3382.887931 C = 3531.762199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.272 4.272 3 H 0.049 0.951 4 C -0.508 4.508 5 H 0.083 0.917 6 C 0.086 3.914 7 N -0.889 5.889 8 Si 0.890 3.110 9 H -0.274 1.274 10 H -0.296 1.296 11 H -0.269 1.269 12 S 1.311 4.689 13 O -0.863 6.863 14 C -0.443 4.443 15 C -0.047 4.047 16 C -0.135 4.135 17 C -0.088 4.088 18 C -0.130 4.130 19 C 0.034 3.966 20 Cl -0.053 7.053 21 H 0.045 0.955 22 H 0.034 0.966 23 H 0.071 0.929 24 H 0.268 0.732 25 H 0.135 0.865 26 H 0.126 0.874 27 H 0.130 0.870 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.376 1.041 -15.116 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.392 4.392 3 H 0.067 0.933 4 C -0.547 4.547 5 H 0.101 0.899 6 C -0.119 4.119 7 N -0.525 5.525 8 Si 0.720 3.280 9 H -0.200 1.200 10 H -0.223 1.223 11 H -0.194 1.194 12 S 1.510 4.490 13 O -0.859 6.859 14 C -0.537 4.537 15 C -0.066 4.066 16 C -0.154 4.154 17 C -0.107 4.107 18 C -0.149 4.149 19 C 0.006 3.994 20 Cl -0.024 7.024 21 H 0.064 0.936 22 H 0.053 0.947 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.153 0.847 26 H 0.144 0.856 27 H 0.148 0.852 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.791 0.157 -14.971 16.877 hybrid contribution -0.257 3.099 0.272 3.121 sum -8.047 3.256 -14.699 17.071 Atomic orbital electron populations 1.22055 0.95410 1.02124 0.99451 1.25198 0.99239 1.05249 1.09541 0.93306 1.20156 1.33289 1.13934 0.87278 0.89943 1.24877 0.95228 0.96418 0.95389 1.69855 1.44586 1.40054 0.98050 0.86770 0.80677 0.83603 0.76913 1.20023 1.22324 1.19418 1.69619 0.86236 1.09762 0.83352 1.92963 1.28068 1.82294 1.82550 1.28294 1.01736 1.07487 1.16144 1.21161 0.99578 0.92184 0.93649 1.21321 0.95608 1.00480 0.97972 1.21180 0.94709 0.95994 0.98787 1.21103 1.00615 0.96952 0.96239 1.20459 0.92058 0.92058 0.94824 1.98393 1.77995 1.47788 1.78190 0.93642 0.94725 0.90996 0.92200 0.84702 0.85590 0.85244 0.84744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 7.10 37.16 0.26 -2.44 15 2 C -0.27 -6.36 2.39 -27.89 -0.07 -6.43 15 3 H 0.05 1.23 7.20 -51.92 -0.37 0.86 15 4 C -0.51 -13.97 9.16 -34.44 -0.32 -14.29 15 5 H 0.08 2.39 7.96 -52.48 -0.42 1.97 15 6 C 0.09 2.43 5.45 -17.82 -0.10 2.34 15 7 N -0.89 -26.54 13.96 55.43 0.77 -25.77 15 8 Si 0.89 21.93 24.37 -169.99 -4.14 17.78 15 9 H -0.27 -6.38 6.87 56.52 0.39 -5.99 15 10 H -0.30 -7.30 7.11 56.52 0.40 -6.89 15 11 H -0.27 -6.53 6.53 56.52 0.37 -6.16 15 12 S 1.31 26.38 11.96 -107.50 -1.29 25.10 15 13 O -0.86 -21.37 16.78 -35.23 -0.59 -21.96 15 14 C -0.44 -7.62 4.99 -39.55 -0.20 -7.82 15 15 C -0.05 -0.78 9.45 -39.59 -0.37 -1.15 15 16 C -0.13 -1.76 10.05 -39.58 -0.40 -2.15 15 17 C -0.09 -1.00 10.05 -39.59 -0.40 -1.40 15 18 C -0.13 -1.57 9.83 -39.55 -0.39 -1.96 15 19 C 0.03 0.50 5.10 -39.50 -0.20 0.29 15 20 Cl -0.05 -0.71 24.57 -51.86 -1.27 -1.98 15 21 H 0.05 0.99 3.27 -51.93 -0.17 0.82 15 22 H 0.03 0.62 5.86 -51.92 -0.30 0.31 15 23 H 0.07 1.33 6.72 -51.93 -0.35 0.98 15 24 H 0.27 7.48 8.31 -40.82 -0.34 7.14 15 25 H 0.14 2.41 7.34 -52.48 -0.39 2.02 15 26 H 0.13 1.31 8.06 -52.49 -0.42 0.88 15 27 H 0.13 1.03 8.06 -52.49 -0.42 0.61 15 28 H 0.13 1.26 8.06 -52.49 -0.42 0.84 15 LS Contribution 256.54 15.07 3.87 3.87 Total: -1.00 -33.31 256.54 -7.28 -40.58 By element: Atomic # 1 Polarization: -0.16 SS G_CDS: -2.45 Total: -2.61 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: -2.17 Total: -35.01 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.77 Total: -25.77 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.59 Total: -21.96 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.14 Total: 17.78 kcal Atomic # 16 Polarization: 26.38 SS G_CDS: -1.29 Total: 25.10 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.27 Total: -1.98 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -33.31 -7.28 -40.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788147.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.800 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds