Wall clock time and date at job start Mon Mar 30 2020 06:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46581 * 2 1 4 4 C 1.50696 * 109.46799 * 119.99579 * 2 1 3 5 5 H 1.08008 * 119.99889 * 120.00491 * 4 2 1 6 6 C 1.37879 * 120.00544 * 300.00119 * 4 2 1 7 7 N 1.31505 * 120.00315 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99600 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47016 * 90.00187 * 8 6 4 10 10 H 1.48501 * 109.46810 * 209.99771 * 8 6 4 11 11 H 1.48499 * 109.47184 * 329.99793 * 8 6 4 12 12 S 1.81400 * 109.47094 * 239.99855 * 2 1 3 13 13 O 1.42107 * 109.46486 * 164.05614 * 12 2 1 14 14 C 1.76201 * 103.00011 * 55.00160 * 12 2 1 15 15 C 1.38233 * 120.00712 * 95.00000 * 14 12 2 16 16 C 1.38222 * 120.01182 * 179.97438 * 15 14 12 17 17 C 1.38258 * 120.02654 * 359.95719 * 16 15 14 18 18 C 1.38195 * 120.01593 * 0.02562 * 17 16 15 19 19 C 1.38328 * 120.00477 * 274.95082 * 14 12 2 20 20 Cl 1.73607 * 120.01190 * 0.05008 * 19 14 12 21 21 H 1.08999 * 109.47625 * 300.00336 * 1 2 3 22 22 H 1.09008 * 109.47225 * 60.00324 * 1 2 3 23 23 H 1.09001 * 109.47300 * 180.02562 * 1 2 3 24 24 H 0.96994 * 120.00460 * 180.02562 * 7 6 4 25 25 H 1.08003 * 119.99514 * 359.97336 * 15 14 12 26 26 H 1.08001 * 119.98363 * 179.97438 * 16 15 14 27 27 H 1.07995 * 119.99588 * 180.02562 * 17 16 15 28 28 H 1.07992 * 120.00897 * 179.73075 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 2.1379 -0.8589 3.5566 8 14 0.6246 1.2791 2.6541 9 1 -0.8029 0.8727 2.6998 10 1 0.9757 1.9952 3.9068 11 1 0.8469 2.1765 1.4920 12 16 2.1346 -0.8552 -1.4811 13 8 3.5071 -0.5449 -1.6799 14 6 1.3384 0.0118 -2.7922 15 6 1.9935 1.0448 -3.4361 16 6 1.3692 1.7246 -4.4650 17 6 0.0895 1.3713 -4.8513 18 6 -0.5664 0.3386 -4.2086 19 6 0.0579 -0.3418 -3.1780 20 17 -0.7655 -1.6390 -2.3697 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 1.9032 -0.5277 4.4375 25 1 2.9934 1.3207 -3.1352 26 1 1.8813 2.5318 -4.9675 27 1 -0.3977 1.9026 -5.6555 28 1 -1.5675 0.0657 -4.5075 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082788147.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:15 Heat of formation + Delta-G solvation = -38.411409 kcal Electronic energy + Delta-G solvation = -15057.441918 eV Core-core repulsion = 12418.231347 eV Total energy + Delta-G solvation = -2639.210571 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.14496 -37.54766 -36.74396 -36.04725 -33.30230 -32.11642 -31.69214 -27.21408 -24.08094 -23.78336 -23.44320 -19.50609 -18.80539 -17.92487 -17.25505 -16.64777 -16.55710 -15.76770 -15.31480 -15.25427 -14.86346 -14.79708 -14.26642 -13.90294 -13.28195 -13.19506 -12.88498 -12.72246 -12.57275 -12.42951 -12.20110 -11.91213 -11.50251 -11.43783 -10.96274 -10.76893 -10.31401 -9.79523 -9.16719 -8.38111 -6.47014 -0.22095 0.16423 0.86940 1.13433 1.24336 1.31259 1.40629 1.93053 2.26428 2.55020 2.87298 3.03091 3.77260 4.01426 4.25665 4.32277 4.38373 4.51402 4.51947 4.63718 4.79243 4.98742 5.06231 5.17854 5.32420 5.38593 5.45417 5.76500 6.00091 6.55905 7.20112 8.76554 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.025940 B = 0.008275 C = 0.007926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.165499 B = 3382.887931 C = 3531.762199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.284 4.284 3 H 0.024 0.976 4 C -0.515 4.515 5 H 0.050 0.950 6 C 0.031 3.969 7 N -0.934 5.934 8 Si 0.945 3.055 9 H -0.245 1.245 10 H -0.298 1.298 11 H -0.266 1.266 12 S 1.348 4.652 13 O -0.921 6.921 14 C -0.465 4.465 15 C -0.074 4.074 16 C -0.131 4.131 17 C -0.067 4.067 18 C -0.121 4.121 19 C 0.028 3.972 20 Cl -0.045 7.045 21 H 0.035 0.965 22 H 0.062 0.938 23 H 0.088 0.912 24 H 0.271 0.729 25 H 0.107 0.893 26 H 0.154 0.846 27 H 0.178 0.822 28 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.629 2.471 -17.950 21.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.404 4.404 3 H 0.043 0.957 4 C -0.553 4.553 5 H 0.068 0.932 6 C -0.169 4.169 7 N -0.573 5.573 8 Si 0.772 3.228 9 H -0.170 1.170 10 H -0.225 1.225 11 H -0.191 1.191 12 S 1.550 4.450 13 O -0.917 6.917 14 C -0.564 4.564 15 C -0.094 4.094 16 C -0.151 4.151 17 C -0.085 4.085 18 C -0.140 4.140 19 C 0.000 4.000 20 Cl -0.016 7.016 21 H 0.053 0.947 22 H 0.081 0.919 23 H 0.107 0.893 24 H 0.080 0.920 25 H 0.125 0.875 26 H 0.172 0.828 27 H 0.195 0.805 28 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.035 1.564 -17.772 20.978 hybrid contribution 0.740 2.658 0.927 2.911 sum -10.294 4.221 -16.845 20.188 Atomic orbital electron populations 1.22000 0.92684 1.03580 1.00230 1.25264 1.01579 1.03498 1.10015 0.95725 1.20424 1.32441 1.13130 0.89342 0.93177 1.25710 0.96733 0.99419 0.95067 1.69983 1.46556 1.42074 0.98707 0.85883 0.80395 0.79919 0.76620 1.17030 1.22527 1.19085 1.68854 0.84464 1.09106 0.82566 1.92862 1.31518 1.83589 1.83755 1.27589 1.03435 1.09350 1.15986 1.21142 0.99033 0.93410 0.95788 1.21650 0.96496 1.00381 0.96526 1.21768 0.93436 0.94774 0.98514 1.21605 1.01945 0.95971 0.94466 1.20607 0.91099 0.92526 0.95744 1.98400 1.77500 1.47490 1.78228 0.94654 0.91923 0.89277 0.91961 0.87505 0.82826 0.80460 0.81026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 7.10 71.98 0.51 -4.50 15 2 C -0.28 -13.56 2.39 29.85 0.07 -13.49 15 3 H 0.02 1.27 7.20 -2.39 -0.02 1.25 15 4 C -0.51 -29.48 9.16 25.60 0.23 -29.25 15 5 H 0.05 3.10 7.96 -2.91 -0.02 3.08 15 6 C 0.03 1.81 5.45 84.66 0.46 2.27 15 7 N -0.93 -57.73 13.96 21.45 0.30 -57.44 15 8 Si 0.95 45.27 24.37 68.60 1.67 46.94 15 9 H -0.25 -10.59 6.87 99.48 0.68 -9.91 15 10 H -0.30 -14.21 7.11 99.48 0.71 -13.50 15 11 H -0.27 -12.48 6.53 99.48 0.65 -11.83 15 12 S 1.35 55.90 11.96 -56.49 -0.68 55.22 15 13 O -0.92 -48.18 16.78 -148.98 -2.50 -50.68 15 14 C -0.47 -15.57 4.99 22.29 0.11 -15.46 15 15 C -0.07 -2.41 9.45 22.26 0.21 -2.20 15 16 C -0.13 -2.94 10.05 22.27 0.22 -2.72 15 17 C -0.07 -1.12 10.05 22.26 0.22 -0.89 15 18 C -0.12 -2.26 9.83 22.29 0.22 -2.04 15 19 C 0.03 0.74 5.10 22.32 0.11 0.86 15 20 Cl -0.05 -1.10 24.57 -2.72 -0.07 -1.16 15 21 H 0.03 1.46 3.27 -2.39 -0.01 1.45 15 22 H 0.06 2.09 5.86 -2.38 -0.01 2.08 15 23 H 0.09 3.15 6.72 -2.39 -0.02 3.14 15 24 H 0.27 15.59 8.31 -92.71 -0.77 14.82 15 25 H 0.11 3.99 7.34 -2.91 -0.02 3.97 15 26 H 0.15 2.54 8.06 -2.91 -0.02 2.51 15 27 H 0.18 1.39 8.06 -2.91 -0.02 1.36 15 28 H 0.17 2.01 8.06 -2.91 -0.02 1.99 15 Total: -1.00 -76.33 256.54 2.21 -74.13 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: 1.10 Total: 0.41 kcal Atomic # 6 Polarization: -69.80 SS G_CDS: 2.38 Total: -67.42 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.30 Total: -57.44 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -2.50 Total: -50.68 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.67 Total: 46.94 kcal Atomic # 16 Polarization: 55.90 SS G_CDS: -0.68 Total: 55.22 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.07 Total: -1.16 kcal Total: -76.33 2.21 -74.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788147.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.715 kcal (2) G-P(sol) polarization free energy of solvation -76.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds