Wall clock time and date at job start Mon Mar 30 2020 06:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47649 * 2 1 4 4 C 1.50704 * 109.46796 * 239.99879 * 2 1 3 5 5 H 1.07996 * 120.00141 * 239.99586 * 4 2 1 6 6 C 1.37875 * 119.99753 * 60.00359 * 4 2 1 7 7 N 1.31515 * 120.00254 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00115 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47085 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47337 * 119.99741 * 8 6 4 11 11 H 1.48499 * 109.47457 * 239.99980 * 8 6 4 12 12 S 1.81403 * 109.47549 * 120.00204 * 2 1 3 13 13 O 1.42108 * 109.46678 * 54.05044 * 12 2 1 14 14 C 1.76195 * 102.99780 * 304.99837 * 12 2 1 15 15 C 1.38237 * 120.00759 * 94.99451 * 14 12 2 16 16 C 1.38224 * 120.01313 * 179.74137 * 15 14 12 17 17 C 1.38264 * 120.02445 * 0.26351 * 16 15 14 18 18 C 1.38190 * 120.01695 * 0.02562 * 17 16 15 19 19 C 1.38328 * 120.00870 * 275.27160 * 14 12 2 20 20 Cl 1.73603 * 120.01189 * 0.02562 * 19 14 12 21 21 H 1.08996 * 109.47291 * 59.99473 * 1 2 3 22 22 H 1.09003 * 109.47303 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46531 * 299.99801 * 1 2 3 24 24 H 0.97002 * 119.99960 * 180.02562 * 7 6 4 25 25 H 1.08002 * 119.99593 * 0.02755 * 15 14 12 26 26 H 1.07996 * 119.98813 * 180.23496 * 16 15 14 27 27 H 1.08004 * 119.98845 * 179.97438 * 17 16 15 28 28 H 1.08000 * 120.00844 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3222 -1.1195 -4.0080 9 1 3.1481 -2.2857 -3.6040 10 1 1.1675 -1.5865 -4.8165 11 1 3.1470 -0.1858 -4.8162 12 16 2.1348 -0.8552 1.4811 13 8 1.5511 -2.1489 1.5525 14 6 1.3386 0.0118 2.7922 15 6 0.1517 -0.4655 3.3161 16 6 -0.4703 0.2116 4.3482 17 6 0.0914 1.3695 4.8536 18 6 1.2747 1.8509 4.3267 19 6 1.8980 1.1733 3.2936 20 17 3.3844 1.7776 2.6309 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 0.7081 1.1609 -3.4844 25 1 -0.2874 -1.3702 2.9220 26 1 -1.3955 -0.1637 4.7597 27 1 -0.3953 1.8983 5.6598 28 1 1.7136 2.7552 4.7218 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082788148.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:17 Heat of formation + Delta-G solvation = -25.350668 kcal Electronic energy + Delta-G solvation = -14943.815097 eV Core-core repulsion = 12305.170882 eV Total energy + Delta-G solvation = -2638.644215 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.91080 -36.29754 -34.74358 -33.96604 -31.07028 -30.50999 -30.16047 -25.32111 -22.81997 -22.46951 -21.36155 -17.98518 -16.52470 -16.32685 -15.42973 -15.22876 -14.88273 -14.04279 -13.91864 -13.62542 -13.23858 -12.81350 -12.11219 -11.69658 -11.60542 -11.37478 -11.30337 -11.07795 -10.91388 -10.78131 -10.76378 -10.31827 -10.26593 -9.21864 -9.15116 -8.92799 -8.60793 -8.48476 -7.26592 -6.10839 -4.24142 1.10972 1.37427 2.23233 2.72232 3.24771 3.32900 3.38486 3.57725 3.96245 4.34379 4.71524 4.96153 5.06379 5.19990 5.28514 5.55926 5.75083 5.97345 6.22290 6.38210 6.48377 6.63331 6.79588 6.83751 6.91518 7.38958 7.67159 7.78149 8.12641 8.76546 9.41192 10.93292 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.029593 B = 0.007244 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.935039 B = 3864.262280 C = 4117.858910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.222 4.222 3 H 0.081 0.919 4 C -0.510 4.510 5 H 0.063 0.937 6 C 0.074 3.926 7 N -0.880 5.880 8 Si 0.897 3.103 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.280 1.280 12 S 1.270 4.730 13 O -0.865 6.865 14 C -0.430 4.430 15 C -0.042 4.042 16 C -0.135 4.135 17 C -0.091 4.091 18 C -0.130 4.130 19 C 0.030 3.970 20 Cl -0.058 7.058 21 H 0.090 0.910 22 H 0.032 0.968 23 H 0.012 0.988 24 H 0.263 0.737 25 H 0.134 0.866 26 H 0.125 0.875 27 H 0.128 0.872 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.475 4.019 12.537 13.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.343 4.343 3 H 0.099 0.901 4 C -0.549 4.549 5 H 0.081 0.919 6 C -0.131 4.131 7 N -0.517 5.517 8 Si 0.724 3.276 9 H -0.193 1.193 10 H -0.209 1.209 11 H -0.206 1.206 12 S 1.470 4.530 13 O -0.861 6.861 14 C -0.524 4.524 15 C -0.062 4.062 16 C -0.155 4.155 17 C -0.109 4.109 18 C -0.149 4.149 19 C 0.002 3.998 20 Cl -0.029 7.029 21 H 0.109 0.891 22 H 0.052 0.948 23 H 0.031 0.969 24 H 0.073 0.927 25 H 0.152 0.848 26 H 0.143 0.857 27 H 0.146 0.854 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.145 3.407 12.481 13.315 hybrid contribution -2.039 -0.189 -1.030 2.292 sum 1.106 3.219 11.451 11.946 Atomic orbital electron populations 1.21771 0.96697 0.99872 1.01165 1.24724 0.99451 1.04872 1.05245 0.90106 1.20487 1.32719 1.12548 0.89139 0.91870 1.24902 0.94515 0.94737 0.98911 1.69895 1.35681 1.22553 1.23613 0.86448 0.78828 0.79829 0.82506 1.19329 1.20870 1.20612 1.69277 1.14346 0.83358 0.85981 1.92963 1.78237 1.30521 1.84358 1.28195 1.04194 1.04377 1.15618 1.21115 0.92512 0.98565 0.93958 1.21306 1.00420 0.96171 0.97570 1.21142 0.94858 0.95883 0.99061 1.21068 0.96442 1.00568 0.96836 1.20462 0.89314 0.94219 0.95784 1.98384 1.32523 1.87081 1.84934 0.89114 0.94850 0.96942 0.92745 0.84809 0.85742 0.85388 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.65 37.16 0.32 -3.12 15 2 C -0.22 -5.44 2.80 -27.88 -0.08 -5.51 15 3 H 0.08 1.98 8.14 -51.92 -0.42 1.56 15 4 C -0.51 -13.80 8.58 -34.44 -0.30 -14.10 15 5 H 0.06 1.69 7.71 -52.49 -0.40 1.29 15 6 C 0.07 2.01 5.30 -17.82 -0.09 1.91 15 7 N -0.88 -24.66 11.32 55.43 0.63 -24.03 15 8 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 15 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 12 S 1.27 26.38 11.93 -107.50 -1.28 25.09 15 13 O -0.87 -21.84 16.66 -35.23 -0.59 -22.42 15 14 C -0.43 -7.87 4.67 -39.55 -0.18 -8.06 15 15 C -0.04 -0.76 8.68 -39.59 -0.34 -1.10 15 16 C -0.14 -1.92 10.05 -39.58 -0.40 -2.32 15 17 C -0.09 -1.14 10.05 -39.59 -0.40 -1.53 15 18 C -0.13 -1.72 9.83 -39.55 -0.39 -2.11 15 19 C 0.03 0.48 6.32 -39.50 -0.25 0.23 15 20 Cl -0.06 -0.84 27.80 -51.86 -1.44 -2.28 15 21 H 0.09 2.48 6.07 -51.93 -0.32 2.16 15 22 H 0.03 0.87 8.10 -51.93 -0.42 0.45 15 23 H 0.01 0.27 6.62 -51.92 -0.34 -0.07 15 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 15 25 H 0.13 2.58 7.34 -52.49 -0.39 2.19 15 26 H 0.12 1.43 8.06 -52.49 -0.42 1.01 15 27 H 0.13 1.16 8.06 -52.48 -0.42 0.73 15 28 H 0.13 1.39 8.06 -52.49 -0.42 0.96 15 LS Contribution 269.96 15.07 4.07 4.07 Total: -1.00 -32.01 269.96 -8.44 -40.46 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -2.70 Total: -1.15 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: -2.11 Total: -35.71 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.63 Total: -24.03 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.59 Total: -22.42 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 26.38 SS G_CDS: -1.28 Total: 25.09 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.44 Total: -2.28 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.01 -8.44 -40.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788148.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.104 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds