Wall clock time and date at job start Mon Mar 30 2020 06:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47649 * 2 1 4 4 C 1.50704 * 109.46796 * 239.99879 * 2 1 3 5 5 H 1.07996 * 120.00141 * 239.99586 * 4 2 1 6 6 C 1.37875 * 119.99753 * 60.00359 * 4 2 1 7 7 N 1.31515 * 120.00254 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00115 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47085 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47337 * 119.99741 * 8 6 4 11 11 H 1.48499 * 109.47457 * 239.99980 * 8 6 4 12 12 S 1.81403 * 109.47549 * 120.00204 * 2 1 3 13 13 O 1.42108 * 109.46678 * 54.05044 * 12 2 1 14 14 C 1.76195 * 102.99780 * 304.99837 * 12 2 1 15 15 C 1.38237 * 120.00759 * 94.99451 * 14 12 2 16 16 C 1.38224 * 120.01313 * 179.74137 * 15 14 12 17 17 C 1.38264 * 120.02445 * 0.26351 * 16 15 14 18 18 C 1.38190 * 120.01695 * 0.02562 * 17 16 15 19 19 C 1.38328 * 120.00870 * 275.27160 * 14 12 2 20 20 Cl 1.73603 * 120.01189 * 0.02562 * 19 14 12 21 21 H 1.08996 * 109.47291 * 59.99473 * 1 2 3 22 22 H 1.09003 * 109.47303 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46531 * 299.99801 * 1 2 3 24 24 H 0.97002 * 119.99960 * 180.02562 * 7 6 4 25 25 H 1.08002 * 119.99593 * 0.02755 * 15 14 12 26 26 H 1.07996 * 119.98813 * 180.23496 * 16 15 14 27 27 H 1.08004 * 119.98845 * 179.97438 * 17 16 15 28 28 H 1.08000 * 120.00844 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3222 -1.1195 -4.0080 9 1 3.1481 -2.2857 -3.6040 10 1 1.1675 -1.5865 -4.8165 11 1 3.1470 -0.1858 -4.8162 12 16 2.1348 -0.8552 1.4811 13 8 1.5511 -2.1489 1.5525 14 6 1.3386 0.0118 2.7922 15 6 0.1517 -0.4655 3.3161 16 6 -0.4703 0.2116 4.3482 17 6 0.0914 1.3695 4.8536 18 6 1.2747 1.8509 4.3267 19 6 1.8980 1.1733 3.2936 20 17 3.3844 1.7776 2.6309 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 0.7081 1.1609 -3.4844 25 1 -0.2874 -1.3702 2.9220 26 1 -1.3955 -0.1637 4.7597 27 1 -0.3953 1.8983 5.6598 28 1 1.7136 2.7552 4.7218 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082788148.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:17 Heat of formation + Delta-G solvation = -45.699086 kcal Electronic energy + Delta-G solvation = -14944.697471 eV Core-core repulsion = 12305.170882 eV Total energy + Delta-G solvation = -2639.526589 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.09149 -37.49158 -36.59560 -35.98760 -32.60406 -31.91427 -31.65300 -27.40191 -24.08900 -23.67696 -23.29275 -19.41450 -18.36961 -17.94479 -17.03284 -16.60466 -16.41992 -15.75100 -15.30697 -14.91383 -14.78765 -14.42118 -13.91895 -13.53360 -13.08299 -12.95289 -12.88357 -12.72807 -12.50373 -12.42949 -12.35622 -12.16544 -11.93327 -11.22653 -10.87934 -10.53502 -10.23983 -9.77344 -9.04764 -8.16642 -6.37135 -0.14940 0.19895 0.95928 1.22822 1.38904 1.41488 1.53770 2.06594 2.38798 2.61068 3.01312 3.15151 3.81287 4.03392 4.28282 4.36645 4.56398 4.59245 4.73083 4.82252 4.82533 5.09470 5.21064 5.33404 5.34991 5.58596 5.68830 5.79670 6.07703 6.70115 7.31038 8.86610 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.029593 B = 0.007244 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.935039 B = 3864.262280 C = 4117.858910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.239 4.239 3 H 0.077 0.923 4 C -0.531 4.531 5 H 0.058 0.942 6 C 0.027 3.973 7 N -0.906 5.906 8 Si 0.955 3.045 9 H -0.265 1.265 10 H -0.284 1.284 11 H -0.266 1.266 12 S 1.322 4.678 13 O -0.918 6.918 14 C -0.457 4.457 15 C -0.069 4.069 16 C -0.134 4.134 17 C -0.070 4.070 18 C -0.123 4.123 19 C 0.023 3.977 20 Cl -0.050 7.050 21 H 0.067 0.933 22 H 0.008 0.992 23 H 0.030 0.970 24 H 0.265 0.735 25 H 0.106 0.894 26 H 0.153 0.847 27 H 0.177 0.823 28 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.599 5.538 14.477 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.359 4.359 3 H 0.095 0.905 4 C -0.570 4.570 5 H 0.076 0.924 6 C -0.175 4.175 7 N -0.544 5.544 8 Si 0.779 3.221 9 H -0.189 1.189 10 H -0.210 1.210 11 H -0.191 1.191 12 S 1.524 4.476 13 O -0.914 6.914 14 C -0.555 4.555 15 C -0.089 4.089 16 C -0.153 4.153 17 C -0.088 4.088 18 C -0.143 4.143 19 C -0.005 4.005 20 Cl -0.021 7.021 21 H 0.085 0.915 22 H 0.028 0.972 23 H 0.049 0.951 24 H 0.074 0.926 25 H 0.124 0.876 26 H 0.171 0.829 27 H 0.194 0.806 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.288 4.913 14.383 15.550 hybrid contribution -2.139 -0.551 -1.412 2.622 sum 1.149 4.362 12.971 13.733 Atomic orbital electron populations 1.21591 0.97670 0.98051 1.00825 1.24812 0.98595 1.05121 1.07347 0.90481 1.20817 1.32862 1.12631 0.90680 0.92422 1.25679 0.94687 0.95432 1.01703 1.69993 1.36477 1.23636 1.24320 0.85551 0.78357 0.79070 0.79101 1.18939 1.20982 1.19141 1.68563 1.13268 0.81385 0.84346 1.92857 1.79540 1.33787 1.85191 1.27602 1.05749 1.06355 1.15776 1.21079 0.93119 0.98626 0.96048 1.21644 1.01133 0.96366 0.96130 1.21730 0.93839 0.94488 0.98764 1.21573 0.96315 1.01106 0.95259 1.20642 0.89775 0.93571 0.96522 1.98390 1.31996 1.86758 1.84982 0.91459 0.97250 0.95082 0.92557 0.87633 0.82918 0.80552 0.81301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.42 8.65 71.98 0.62 -5.79 15 2 C -0.24 -12.07 2.80 29.85 0.08 -11.98 15 3 H 0.08 3.88 8.14 -2.39 -0.02 3.86 15 4 C -0.53 -29.57 8.58 25.60 0.22 -29.35 15 5 H 0.06 3.18 7.71 -2.91 -0.02 3.16 15 6 C 0.03 1.47 5.30 84.65 0.45 1.92 15 7 N -0.91 -51.76 11.32 21.45 0.24 -51.51 15 8 Si 0.95 43.50 29.54 68.60 2.03 45.52 15 9 H -0.27 -11.81 7.11 99.48 0.71 -11.11 15 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 15 11 H -0.27 -11.47 7.11 99.48 0.71 -10.77 15 12 S 1.32 56.37 11.93 -56.49 -0.67 55.70 15 13 O -0.92 -48.26 16.66 -148.98 -2.48 -50.74 15 14 C -0.46 -16.54 4.67 22.29 0.10 -16.44 15 15 C -0.07 -2.44 8.68 22.27 0.19 -2.25 15 16 C -0.13 -3.38 10.05 22.27 0.22 -3.15 15 17 C -0.07 -1.39 10.05 22.26 0.22 -1.16 15 18 C -0.12 -2.72 9.83 22.29 0.22 -2.50 15 19 C 0.02 0.68 6.32 22.32 0.14 0.82 15 20 Cl -0.05 -1.37 27.80 -2.72 -0.08 -1.44 15 21 H 0.07 3.80 6.07 -2.39 -0.01 3.79 15 22 H 0.01 0.47 8.10 -2.39 -0.02 0.45 15 23 H 0.03 1.44 6.62 -2.38 -0.02 1.42 15 24 H 0.27 14.26 8.31 -92.71 -0.77 13.49 15 25 H 0.11 4.25 7.34 -2.91 -0.02 4.23 15 26 H 0.15 2.94 8.06 -2.91 -0.02 2.91 15 27 H 0.18 1.88 8.06 -2.91 -0.02 1.85 15 28 H 0.17 2.54 8.06 -2.91 -0.02 2.52 15 Total: -1.00 -71.45 269.96 2.68 -68.76 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 1.17 Total: 3.62 kcal Atomic # 6 Polarization: -72.38 SS G_CDS: 2.48 Total: -69.90 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.24 Total: -51.51 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -2.48 Total: -50.74 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 56.37 SS G_CDS: -0.67 Total: 55.70 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.44 kcal Total: -71.45 2.68 -68.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788148.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.061 kcal (2) G-P(sol) polarization free energy of solvation -71.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds