Wall clock time and date at job start Mon Mar 30 2020 06:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00123 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00183 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99994 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.38224 * 119.98375 * 269.73136 * 10 9 7 12 12 C 1.38440 * 119.99098 * 179.74623 * 11 10 9 13 13 F 1.35106 * 120.01937 * 180.29424 * 12 11 10 14 14 C 1.38457 * 119.96414 * 0.52405 * 12 11 10 15 15 C 1.38269 * 119.96183 * 359.75043 * 14 12 11 16 16 Br 1.89099 * 119.99996 * 180.02562 * 15 14 12 17 17 C 1.38212 * 119.97978 * 90.00134 * 10 9 7 18 18 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 20 20 H 1.09000 * 109.47722 * 300.00831 * 9 7 2 21 21 H 1.08001 * 120.00037 * 359.97438 * 11 10 9 22 22 H 1.08000 * 120.02263 * 179.76809 * 14 12 11 23 23 H 1.08002 * 119.97742 * 359.96125 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6750 -4.1733 -1.1978 12 6 3.5786 -5.2222 -1.1980 13 9 4.0181 -5.7355 -2.3679 14 6 4.0280 -5.7480 0.0014 15 6 3.5778 -5.2215 1.1981 16 35 4.1915 -5.9383 2.8368 17 6 2.6791 -4.1696 1.1967 18 1 -0.4849 0.8400 0.0004 19 1 0.6241 -2.5566 -0.8904 20 1 0.6246 -2.5571 0.8896 21 1 2.3202 -3.7658 -2.1329 22 1 4.7301 -6.5687 0.0024 23 1 2.3282 -3.7582 2.1316 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084193956.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:06 Heat of formation + Delta-G solvation = -35.906924 kcal Electronic energy + Delta-G solvation = -11401.541790 eV Core-core repulsion = 8981.798960 eV Total energy + Delta-G solvation = -2419.742831 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -48.62311 -38.74259 -33.72352 -32.07931 -30.95326 -28.95403 -27.34494 -23.62523 -22.11115 -20.68348 -16.83294 -16.38495 -16.10060 -15.82603 -15.31249 -14.61276 -13.62223 -13.16074 -12.79948 -12.73712 -12.15027 -11.66360 -11.31599 -11.12544 -10.66402 -10.64467 -10.46560 -10.18729 -9.74248 -9.57438 -8.53629 -8.35684 -8.20219 -6.15974 -4.21016 1.35813 1.55855 1.74949 3.25040 3.31763 3.35541 3.90033 4.36892 4.57485 5.08212 5.19820 5.35389 5.45715 5.74712 5.92049 6.30607 6.39529 6.63082 6.75225 7.18273 7.37567 7.55084 7.78950 8.13923 8.83529 9.44012 10.93973 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.024334 B = 0.006718 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.363743 B = 4167.119953 C = 4905.757193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.047 3.953 10 C 0.001 3.999 11 C -0.142 4.142 12 C 0.099 3.901 13 F -0.143 7.143 14 C -0.157 4.157 15 C -0.062 4.062 16 Br -0.059 7.059 17 C -0.103 4.103 18 H 0.264 0.736 19 H 0.036 0.964 20 H 0.037 0.963 21 H 0.139 0.861 22 H 0.134 0.866 23 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.891 -11.622 3.436 13.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.557 4.557 8 H 0.077 0.923 9 C 0.010 3.990 10 C 0.000 4.000 11 C -0.161 4.161 12 C 0.079 3.921 13 F -0.121 7.121 14 C -0.178 4.178 15 C -0.142 4.142 16 Br 0.027 6.973 17 C -0.123 4.123 18 H 0.074 0.926 19 H 0.054 0.946 20 H 0.055 0.945 21 H 0.157 0.843 22 H 0.152 0.848 23 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.983 -11.796 4.015 14.284 hybrid contribution 0.445 0.989 -0.601 1.240 sum 7.428 -10.807 3.414 13.550 Atomic orbital electron populations 1.69946 1.06056 1.27118 1.49817 1.24997 0.94912 0.99366 0.94838 0.86496 0.79849 0.82881 0.78294 1.20479 1.21036 1.19699 1.20996 0.93114 0.89561 1.51996 0.92265 1.18445 0.92304 0.89019 0.99191 1.20624 0.94907 0.94169 0.90322 1.21283 0.98258 0.96010 1.00544 1.17561 0.97903 0.95936 0.80658 1.91469 1.88339 1.86225 1.46114 1.20726 1.03922 1.03042 0.90086 1.21429 1.02020 1.00136 0.90595 1.96635 1.88384 1.84809 1.27496 1.21174 0.96647 0.94651 0.99817 0.92629 0.94597 0.94523 0.84350 0.84794 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.32 13.29 55.43 0.74 -24.58 14 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 14 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 14 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 14 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 14 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 14 7 C -0.52 -13.83 9.09 -34.44 -0.31 -14.14 14 8 H 0.06 1.57 7.74 -52.48 -0.41 1.17 14 9 C 0.05 1.14 5.10 -29.03 -0.15 0.99 14 10 C 0.00 0.02 5.07 -104.63 -0.53 -0.51 14 11 C -0.14 -2.63 9.68 -39.51 -0.38 -3.02 14 12 C 0.10 1.69 7.30 -39.43 -0.29 1.40 14 13 F -0.14 -2.34 17.27 2.25 0.04 -2.30 14 14 C -0.16 -2.47 9.77 -39.49 -0.39 -2.86 14 15 C -0.06 -1.02 6.22 -39.53 -0.25 -1.27 14 16 Br -0.06 -0.81 33.70 -68.01 -2.29 -3.10 14 17 C -0.10 -1.89 9.44 -39.55 -0.37 -2.26 14 18 H 0.26 7.10 8.31 -40.82 -0.34 6.76 14 19 H 0.04 0.90 8.08 -51.93 -0.42 0.48 14 20 H 0.04 0.92 8.08 -51.93 -0.42 0.50 14 21 H 0.14 2.48 8.06 -52.49 -0.42 2.05 14 22 H 0.13 1.81 8.06 -52.49 -0.42 1.38 14 23 H 0.14 2.44 8.06 -52.49 -0.42 2.02 14 LS Contribution 238.64 15.07 3.60 3.60 Total: -1.00 -26.95 238.64 -7.35 -34.31 By element: Atomic # 1 Polarization: -2.03 SS G_CDS: -1.65 Total: -3.68 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -2.76 Total: -20.11 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.74 Total: -24.58 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 35 Polarization: -0.81 SS G_CDS: -2.29 Total: -3.10 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -26.95 -7.35 -34.31 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084193956.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.597 kcal (2) G-P(sol) polarization free energy of solvation -26.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds