Wall clock time and date at job start Mon Mar 30 2020 06:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00123 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00183 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99994 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.38224 * 119.98375 * 269.73136 * 10 9 7 12 12 C 1.38440 * 119.99098 * 179.74623 * 11 10 9 13 13 F 1.35106 * 120.01937 * 180.29424 * 12 11 10 14 14 C 1.38457 * 119.96414 * 0.52405 * 12 11 10 15 15 C 1.38269 * 119.96183 * 359.75043 * 14 12 11 16 16 Br 1.89099 * 119.99996 * 180.02562 * 15 14 12 17 17 C 1.38212 * 119.97978 * 90.00134 * 10 9 7 18 18 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 20 20 H 1.09000 * 109.47722 * 300.00831 * 9 7 2 21 21 H 1.08001 * 120.00037 * 359.97438 * 11 10 9 22 22 H 1.08000 * 120.02263 * 179.76809 * 14 12 11 23 23 H 1.08002 * 119.97742 * 359.96125 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6750 -4.1733 -1.1978 12 6 3.5786 -5.2222 -1.1980 13 9 4.0181 -5.7355 -2.3679 14 6 4.0280 -5.7480 0.0014 15 6 3.5778 -5.2215 1.1981 16 35 4.1915 -5.9383 2.8368 17 6 2.6791 -4.1696 1.1967 18 1 -0.4849 0.8400 0.0004 19 1 0.6241 -2.5566 -0.8904 20 1 0.6246 -2.5571 0.8896 21 1 2.3202 -3.7658 -2.1329 22 1 4.7301 -6.5687 0.0024 23 1 2.3282 -3.7582 2.1316 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084193956.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:06 Heat of formation + Delta-G solvation = -49.062895 kcal Electronic energy + Delta-G solvation = -11402.112276 eV Core-core repulsion = 8981.798960 eV Total energy + Delta-G solvation = -2420.313316 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.95678 -40.17879 -35.58087 -33.67667 -32.45586 -30.29749 -29.12711 -25.49535 -23.49981 -22.26582 -18.57932 -18.12570 -17.50167 -17.20794 -16.65934 -16.51885 -14.99723 -14.57192 -14.55206 -14.35748 -13.72317 -13.37341 -13.05032 -12.77430 -12.47257 -12.32673 -11.90863 -11.61422 -11.38871 -11.29921 -10.61668 -9.73633 -9.67773 -8.22911 -6.35337 -0.03839 0.15057 0.47182 1.41710 1.42219 1.53321 2.35223 2.52575 3.09296 3.20055 3.74454 3.94702 4.06696 4.31025 4.47908 4.89831 4.95094 5.08883 5.16104 5.31572 5.71188 5.73065 5.79211 6.11674 6.76490 7.33692 8.86987 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.024334 B = 0.006718 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.363743 B = 4167.119953 C = 4905.757193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.532 4.532 8 H 0.057 0.943 9 C 0.055 3.945 10 C -0.021 4.021 11 C -0.148 4.148 12 C 0.102 3.898 13 F -0.137 7.137 14 C -0.139 4.139 15 C -0.063 4.063 16 Br -0.027 7.027 17 C -0.107 4.107 18 H 0.266 0.734 19 H 0.015 0.985 20 H 0.017 0.983 21 H 0.136 0.864 22 H 0.165 0.835 23 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.649 -12.362 3.798 15.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.075 0.925 9 C 0.018 3.982 10 C -0.023 4.023 11 C -0.167 4.167 12 C 0.082 3.918 13 F -0.115 7.115 14 C -0.160 4.160 15 C -0.143 4.143 16 Br 0.059 6.941 17 C -0.127 4.127 18 H 0.075 0.925 19 H 0.033 0.967 20 H 0.035 0.965 21 H 0.154 0.846 22 H 0.183 0.817 23 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.750 -12.549 4.377 15.912 hybrid contribution -0.069 1.107 -0.677 1.299 sum 8.681 -11.442 3.700 14.832 Atomic orbital electron populations 1.70058 1.07545 1.28066 1.50895 1.25848 0.95718 1.02919 0.94473 0.85482 0.78677 0.78640 0.78520 1.19823 1.20544 1.19026 1.21334 0.93204 0.90972 1.51498 0.92484 1.18171 0.92667 0.90210 0.97141 1.20213 0.95787 0.94309 0.91946 1.21242 0.98871 0.96750 0.99884 1.17488 0.97468 0.95436 0.81369 1.91487 1.88139 1.85989 1.45923 1.21051 1.03042 1.02786 0.89101 1.21530 1.01108 0.99299 0.92339 1.96670 1.87824 1.84098 1.25530 1.21138 0.97218 0.95395 0.98971 0.92465 0.96706 0.96492 0.84567 0.81729 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.71 13.29 21.45 0.28 -53.42 14 2 C 0.01 0.51 5.46 84.65 0.46 0.97 14 3 Si 0.96 42.88 29.54 68.60 2.03 44.90 14 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 14 5 H -0.28 -12.18 7.11 99.48 0.71 -11.48 14 6 H -0.27 -11.47 7.11 99.48 0.71 -10.77 14 7 C -0.53 -28.91 9.09 25.60 0.23 -28.68 14 8 H 0.06 3.05 7.74 -2.91 -0.02 3.03 14 9 C 0.06 2.75 5.10 29.10 0.15 2.90 14 10 C -0.02 -0.88 5.07 -19.87 -0.10 -0.98 14 11 C -0.15 -5.47 9.68 22.31 0.22 -5.26 14 12 C 0.10 3.28 7.30 22.37 0.16 3.44 14 13 F -0.14 -4.16 17.27 44.97 0.78 -3.39 14 14 C -0.14 -3.97 9.77 22.33 0.22 -3.75 14 15 C -0.06 -1.92 6.22 22.30 0.14 -1.78 14 16 Br -0.03 -0.66 33.70 -20.37 -0.69 -1.35 14 17 C -0.11 -3.87 9.44 22.29 0.21 -3.66 14 18 H 0.27 14.54 8.31 -92.71 -0.77 13.77 14 19 H 0.01 0.78 8.08 -2.39 -0.02 0.76 14 20 H 0.02 0.89 8.08 -2.39 -0.02 0.87 14 21 H 0.14 4.96 8.06 -2.91 -0.02 4.93 14 22 H 0.17 3.70 8.06 -2.91 -0.02 3.68 14 23 H 0.13 4.81 8.06 -2.91 -0.02 4.79 14 Total: -1.00 -56.88 238.64 5.31 -51.58 By element: Atomic # 1 Polarization: -2.75 SS G_CDS: 1.22 Total: -1.53 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 1.69 Total: -36.79 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.28 Total: -53.42 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.78 Total: -3.39 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 35 Polarization: -0.66 SS G_CDS: -0.69 Total: -1.35 kcal Total: -56.88 5.31 -51.58 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084193956.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.513 kcal (2) G-P(sol) polarization free energy of solvation -56.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds