Wall clock time and date at job start Mon Mar 30 2020 06:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47202 * 2 1 4 4 H 1.08997 * 109.47046 * 305.61867 * 3 2 1 5 5 C 1.50703 * 109.47365 * 65.62152 * 3 2 1 6 6 H 1.07999 * 119.99961 * 35.28571 * 5 3 2 7 7 C 1.37878 * 120.00184 * 215.29102 * 5 3 2 8 8 N 1.31505 * 120.00113 * 175.29755 * 7 5 3 9 9 Si 1.86802 * 119.99810 * 355.29854 * 7 5 3 10 10 H 1.48502 * 109.47288 * 94.86191 * 9 7 5 11 11 H 1.48499 * 109.47195 * 214.86387 * 9 7 5 12 12 H 1.48504 * 109.47181 * 334.86438 * 9 7 5 13 13 C 1.50702 * 109.47210 * 185.62015 * 3 2 1 14 14 C 1.34502 * 125.78234 * 120.32599 * 13 3 2 15 15 C 1.41396 * 106.84872 * 180.13961 * 14 13 3 16 16 C 1.34624 * 106.83368 * 359.60671 * 15 14 13 17 17 Br 1.89101 * 125.79654 * 180.22252 * 16 15 14 18 18 O 1.34305 * 108.39945 * 0.24271 * 16 15 14 19 19 H 1.09003 * 109.46971 * 64.85549 * 1 2 3 20 20 H 1.08997 * 109.47342 * 184.85633 * 1 2 3 21 21 H 1.08998 * 109.47430 * 304.86184 * 1 2 3 22 22 H 1.09001 * 109.46840 * 239.99736 * 2 1 3 23 23 H 1.09003 * 109.47247 * 120.00056 * 2 1 3 24 24 H 0.97007 * 119.99828 * 179.97438 * 8 7 5 25 25 H 1.07995 * 126.57834 * 0.02562 * 14 13 3 26 26 H 1.07999 * 126.58311 * 179.87090 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5968 1.9845 -0.8354 5 6 1.6545 2.1116 1.2941 6 1 1.6414 1.5437 2.2127 7 6 1.3185 3.4488 1.3055 8 7 0.8934 4.0105 2.4159 9 14 1.4672 4.4624 -0.2565 10 1 0.1543 4.4996 -0.9494 11 1 1.8842 5.8453 0.0886 12 1 2.4815 3.8482 -1.1506 13 6 3.5405 1.4447 -0.1391 14 6 4.2375 2.0273 -1.1311 15 6 5.6053 1.7821 -0.8698 16 6 5.6627 1.0711 0.2720 17 35 7.2406 0.4592 1.1157 18 8 4.4090 0.8700 0.7096 19 1 -0.3633 0.4367 -0.9303 20 1 -0.3634 -1.0239 0.0870 21 1 -0.3634 0.5874 0.8432 22 1 1.8932 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.6574 4.9514 2.4240 25 1 3.8304 2.5755 -1.9678 26 1 6.4433 2.1068 -1.4687 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084423996.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:29 Heat of formation + Delta-G solvation = 4.219910 kcal Electronic energy + Delta-G solvation = -12241.628829 eV Core-core repulsion = 9947.086333 eV Total energy + Delta-G solvation = -2294.542496 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.000 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.89162 -35.30476 -32.51899 -32.08997 -31.41419 -29.00231 -26.27503 -23.56910 -21.30220 -20.63809 -19.28060 -17.24704 -16.27140 -15.49174 -14.50441 -13.94516 -13.56055 -12.83314 -12.66407 -12.58331 -12.23829 -11.86039 -11.27935 -10.98278 -10.92929 -10.65728 -10.46955 -10.24460 -9.83698 -9.81244 -9.36025 -9.20405 -8.72434 -7.61441 -6.24223 -4.26067 1.37267 2.23032 3.16160 3.22657 3.30244 3.32374 4.09900 4.28943 5.08620 5.48585 5.59949 5.88900 6.02452 6.14155 6.19588 6.36506 6.50187 6.55543 6.68687 6.83476 7.03730 7.08078 7.17932 7.49212 7.76708 8.33791 8.82204 9.35352 10.87349 Molecular weight = 258.00amu Principal moments of inertia in cm(-1) A = 0.029076 B = 0.007583 C = 0.007029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.774349 B = 3691.448471 C = 3982.613846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 C 0.077 3.923 4 H 0.068 0.932 5 C -0.509 4.509 6 H 0.081 0.919 7 C 0.078 3.922 8 N -0.885 5.885 9 Si 0.861 3.139 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.248 1.248 13 C 0.085 3.915 14 C -0.265 4.265 15 C -0.148 4.148 16 C -0.068 4.068 17 Br 0.020 6.980 18 O -0.150 6.150 19 H 0.042 0.958 20 H 0.037 0.963 21 H 0.074 0.926 22 H 0.039 0.961 23 H 0.058 0.942 24 H 0.267 0.733 25 H 0.146 0.854 26 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.587 -6.123 -6.017 12.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 C 0.058 3.942 4 H 0.086 0.914 5 C -0.545 4.545 6 H 0.099 0.901 7 C -0.126 4.126 8 N -0.521 5.521 9 Si 0.687 3.313 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.172 1.172 13 C 0.031 3.969 14 C -0.285 4.285 15 C -0.170 4.170 16 C -0.195 4.195 17 Br 0.103 6.897 18 O -0.046 6.046 19 H 0.061 0.939 20 H 0.056 0.944 21 H 0.093 0.907 22 H 0.058 0.942 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.163 0.837 26 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.029 -6.331 -5.328 13.002 hybrid contribution -0.024 1.105 -0.960 1.464 sum 10.005 -5.226 -6.289 12.921 Atomic orbital electron populations 1.21667 0.95786 0.99983 1.02407 1.21451 0.96110 0.96617 1.00051 1.18276 0.80739 0.95456 0.99741 0.91386 1.20845 1.45378 0.95202 0.93107 0.90104 1.25099 0.93686 0.97615 0.96226 1.69885 1.42616 1.12667 1.26950 0.87073 0.79452 0.80289 0.84493 1.20010 1.21115 1.17211 1.24488 0.94441 0.91966 0.86002 1.21566 0.92163 1.10867 1.03894 1.21515 0.98015 1.01100 0.96356 1.23443 0.84740 1.12046 0.99270 1.96654 1.22209 1.88974 1.81823 1.84115 1.13265 1.61107 1.46090 0.93913 0.94355 0.90720 0.94232 0.92367 0.92292 0.83674 0.83643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.81 37.16 0.36 -2.19 15 2 C -0.10 -2.05 5.37 -26.74 -0.14 -2.20 15 3 C 0.08 1.74 1.73 -92.92 -0.16 1.58 15 4 H 0.07 1.49 5.52 -51.93 -0.29 1.20 15 5 C -0.51 -13.59 7.78 -34.44 -0.27 -13.85 15 6 H 0.08 2.39 8.06 -52.49 -0.42 1.96 15 7 C 0.08 2.15 5.47 -17.82 -0.10 2.05 15 8 N -0.89 -26.09 13.96 55.43 0.77 -25.31 15 9 Si 0.86 20.19 26.94 -169.99 -4.58 15.61 15 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 12 H -0.25 -5.41 4.54 56.52 0.26 -5.15 15 13 C 0.09 1.89 5.59 -35.63 -0.20 1.69 15 14 C -0.27 -5.34 9.72 -39.70 -0.39 -5.73 15 15 C -0.15 -2.70 10.86 -39.66 -0.43 -3.13 15 16 C -0.07 -1.31 7.80 29.45 0.23 -1.08 15 17 Br 0.02 0.30 34.09 -68.01 -2.32 -2.01 15 18 O -0.15 -3.36 10.65 5.57 0.06 -3.30 15 19 H 0.04 0.71 8.14 -51.93 -0.42 0.29 15 20 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 21 H 0.07 1.52 7.26 -51.93 -0.38 1.14 15 22 H 0.04 0.70 8.14 -51.93 -0.42 0.27 15 23 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 24 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 25 H 0.15 2.70 7.13 -52.49 -0.37 2.33 15 26 H 0.15 2.17 8.06 -52.49 -0.42 1.75 15 LS Contribution 245.42 15.07 3.70 3.70 Total: -1.00 -28.40 245.42 -6.31 -34.71 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -2.85 Total: -0.53 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -1.09 Total: -22.86 kcal Atomic # 7 Polarization: -26.09 SS G_CDS: 0.77 Total: -25.31 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: 0.06 Total: -3.30 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.58 Total: 15.61 kcal Atomic # 35 Polarization: 0.30 SS G_CDS: -2.32 Total: -2.01 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.40 -6.31 -34.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084423996.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.932 kcal (2) G-P(sol) polarization free energy of solvation -28.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds