Wall clock time and date at job start Mon Mar 30 2020 06:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47202 * 2 1 4 4 H 1.08997 * 109.47046 * 305.61867 * 3 2 1 5 5 C 1.50703 * 109.47365 * 65.62152 * 3 2 1 6 6 H 1.07999 * 119.99961 * 35.28571 * 5 3 2 7 7 C 1.37878 * 120.00184 * 215.29102 * 5 3 2 8 8 N 1.31505 * 120.00113 * 175.29755 * 7 5 3 9 9 Si 1.86802 * 119.99810 * 355.29854 * 7 5 3 10 10 H 1.48502 * 109.47288 * 94.86191 * 9 7 5 11 11 H 1.48499 * 109.47195 * 214.86387 * 9 7 5 12 12 H 1.48504 * 109.47181 * 334.86438 * 9 7 5 13 13 C 1.50702 * 109.47210 * 185.62015 * 3 2 1 14 14 C 1.34502 * 125.78234 * 120.32599 * 13 3 2 15 15 C 1.41396 * 106.84872 * 180.13961 * 14 13 3 16 16 C 1.34624 * 106.83368 * 359.60671 * 15 14 13 17 17 Br 1.89101 * 125.79654 * 180.22252 * 16 15 14 18 18 O 1.34305 * 108.39945 * 0.24271 * 16 15 14 19 19 H 1.09003 * 109.46971 * 64.85549 * 1 2 3 20 20 H 1.08997 * 109.47342 * 184.85633 * 1 2 3 21 21 H 1.08998 * 109.47430 * 304.86184 * 1 2 3 22 22 H 1.09001 * 109.46840 * 239.99736 * 2 1 3 23 23 H 1.09003 * 109.47247 * 120.00056 * 2 1 3 24 24 H 0.97007 * 119.99828 * 179.97438 * 8 7 5 25 25 H 1.07995 * 126.57834 * 0.02562 * 14 13 3 26 26 H 1.07999 * 126.58311 * 179.87090 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5968 1.9845 -0.8354 5 6 1.6545 2.1116 1.2941 6 1 1.6414 1.5437 2.2127 7 6 1.3185 3.4488 1.3055 8 7 0.8934 4.0105 2.4159 9 14 1.4672 4.4624 -0.2565 10 1 0.1543 4.4996 -0.9494 11 1 1.8842 5.8453 0.0886 12 1 2.4815 3.8482 -1.1506 13 6 3.5405 1.4447 -0.1391 14 6 4.2375 2.0273 -1.1311 15 6 5.6053 1.7821 -0.8698 16 6 5.6627 1.0711 0.2720 17 35 7.2406 0.4592 1.1157 18 8 4.4090 0.8700 0.7096 19 1 -0.3633 0.4367 -0.9303 20 1 -0.3634 -1.0239 0.0870 21 1 -0.3634 0.5874 0.8432 22 1 1.8932 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.6574 4.9514 2.4240 25 1 3.8304 2.5755 -1.9678 26 1 6.4433 2.1068 -1.4687 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084423996.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:29 Heat of formation + Delta-G solvation = -12.369487 kcal Electronic energy + Delta-G solvation = -12242.348199 eV Core-core repulsion = 9947.086333 eV Total energy + Delta-G solvation = -2295.261866 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.000 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.46457 -37.04602 -34.11500 -34.02328 -32.82377 -30.57175 -28.04932 -25.32506 -22.85530 -22.22379 -20.93220 -19.22034 -17.87178 -17.12145 -16.37429 -15.52769 -15.31057 -14.69380 -14.16493 -14.08319 -13.77242 -13.48109 -13.00005 -12.74861 -12.40569 -12.16298 -12.05410 -11.76100 -11.57721 -11.49857 -11.15304 -10.80199 -10.72424 -9.16995 -8.33478 -6.40237 -0.03148 0.69145 1.34464 1.39798 1.48670 1.67996 2.33617 2.53052 3.07457 3.99845 4.08674 4.31048 4.50192 4.60958 4.68222 4.84051 4.93782 5.03962 5.18229 5.24195 5.40774 5.47404 5.61126 5.68862 6.09404 6.32994 6.66436 7.25064 8.82285 Molecular weight = 258.00amu Principal moments of inertia in cm(-1) A = 0.029076 B = 0.007583 C = 0.007029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.774349 B = 3691.448471 C = 3982.613846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.102 4.102 3 C 0.077 3.923 4 H 0.080 0.920 5 C -0.506 4.506 6 H 0.030 0.970 7 C 0.018 3.982 8 N -0.941 5.941 9 Si 0.924 3.076 10 H -0.261 1.261 11 H -0.293 1.293 12 H -0.219 1.219 13 C 0.050 3.950 14 C -0.257 4.257 15 C -0.141 4.141 16 C -0.083 4.083 17 Br 0.054 6.946 18 O -0.179 6.179 19 H 0.060 0.940 20 H 0.065 0.935 21 H 0.040 0.960 22 H 0.067 0.933 23 H 0.039 0.961 24 H 0.267 0.733 25 H 0.166 0.834 26 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.918 -6.283 -8.760 15.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.140 4.140 3 C 0.058 3.942 4 H 0.098 0.902 5 C -0.543 4.543 6 H 0.049 0.951 7 C -0.181 4.181 8 N -0.580 5.580 9 Si 0.747 3.253 10 H -0.186 1.186 11 H -0.220 1.220 12 H -0.141 1.141 13 C -0.004 4.004 14 C -0.276 4.276 15 C -0.163 4.163 16 C -0.210 4.210 17 Br 0.138 6.862 18 O -0.076 6.076 19 H 0.079 0.921 20 H 0.084 0.916 21 H 0.059 0.941 22 H 0.085 0.915 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.183 0.817 26 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 11.366 -6.523 -8.089 15.400 hybrid contribution -0.315 1.020 -0.022 1.067 sum 11.051 -5.504 -8.111 14.772 Atomic orbital electron populations 1.21619 0.94694 1.01297 1.01813 1.21426 0.97078 0.95044 1.00467 1.18212 0.81825 0.96682 0.97488 0.90185 1.20942 1.44860 0.95096 0.93404 0.95130 1.26000 0.93424 0.98905 0.99751 1.70048 1.45126 1.13047 1.29772 0.86081 0.80772 0.77825 0.80666 1.18551 1.22008 1.14091 1.24221 0.94263 0.94320 0.87554 1.21898 0.92889 1.09374 1.03453 1.21940 0.98377 0.99959 0.96029 1.24161 0.84727 1.12002 1.00110 1.96680 1.19385 1.88694 1.81491 1.84070 1.14687 1.61906 1.46942 0.92142 0.91648 0.94088 0.91464 0.94179 0.92385 0.81669 0.79964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 9.81 71.98 0.71 -4.11 15 2 C -0.10 -3.95 5.37 30.59 0.16 -3.78 15 3 C 0.08 3.41 1.73 -12.29 -0.02 3.39 15 4 H 0.08 3.32 5.52 -2.39 -0.01 3.30 15 5 C -0.51 -27.91 7.78 25.60 0.20 -27.71 15 6 H 0.03 1.93 8.06 -2.91 -0.02 1.91 15 7 C 0.02 1.00 5.47 84.66 0.46 1.46 15 8 N -0.94 -57.76 13.96 21.45 0.30 -57.46 15 9 Si 0.92 41.13 26.94 68.60 1.85 42.98 15 10 H -0.26 -10.97 7.11 99.48 0.71 -10.27 15 11 H -0.29 -13.41 7.11 99.48 0.71 -12.70 15 12 H -0.22 -8.54 4.54 99.48 0.45 -8.09 15 13 C 0.05 2.14 5.59 24.83 0.14 2.28 15 14 C -0.26 -9.46 9.72 22.19 0.22 -9.24 15 15 C -0.14 -4.66 10.86 22.22 0.24 -4.42 15 16 C -0.08 -3.05 7.80 66.99 0.52 -2.52 15 17 Br 0.05 1.54 34.09 -20.37 -0.69 0.84 15 18 O -0.18 -7.92 10.65 -2.97 -0.03 -7.95 15 19 H 0.06 1.89 8.14 -2.39 -0.02 1.87 15 20 H 0.06 1.91 8.14 -2.39 -0.02 1.89 15 21 H 0.04 1.69 7.26 -2.39 -0.02 1.68 15 22 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 23 H 0.04 1.65 8.14 -2.39 -0.02 1.63 15 24 H 0.27 15.36 8.31 -92.70 -0.77 14.59 15 25 H 0.17 5.33 7.13 -2.91 -0.02 5.31 15 26 H 0.18 4.53 8.06 -2.91 -0.02 4.51 15 Total: -1.00 -63.39 245.42 4.97 -58.42 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 0.92 Total: 7.83 kcal Atomic # 6 Polarization: -47.29 SS G_CDS: 2.63 Total: -44.66 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.30 Total: -57.46 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.03 Total: -7.95 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.85 Total: 42.98 kcal Atomic # 35 Polarization: 1.54 SS G_CDS: -0.69 Total: 0.84 kcal Total: -63.39 4.97 -58.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084423996.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.054 kcal (2) G-P(sol) polarization free energy of solvation -63.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds