Wall clock time and date at job start Mon Mar 30 2020 06:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00304 * 2 1 4 4 H 1.48497 * 109.47315 * 240.00046 * 3 2 1 5 5 H 1.48505 * 109.47300 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47529 * 120.00052 * 3 2 1 7 7 C 1.37880 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99634 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99840 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46891 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47199 * 179.97438 * 10 9 7 12 12 C 1.76199 * 103.00071 * 179.97438 * 11 10 9 13 13 C 1.34292 * 122.52751 * 0.02562 * 12 11 10 14 14 S 1.70598 * 110.97592 * 179.97438 * 13 12 11 15 15 C 1.75801 * 91.65297 * 359.97438 * 14 13 12 16 16 C 1.46348 * 125.40483 * 180.02562 * 15 14 13 17 17 O 1.21644 * 119.99764 * 180.02562 * 16 15 14 18 18 O 1.34910 * 120.00568 * 0.02587 * 16 15 14 19 19 C 1.36821 * 109.18377 * 359.76243 * 15 14 13 20 20 H 0.97003 * 119.99697 * 0.02562 * 1 2 3 21 21 H 1.08990 * 109.47548 * 59.99922 * 9 7 2 22 22 H 1.09000 * 109.46946 * 299.99501 * 9 7 2 23 23 H 1.08998 * 109.46864 * 59.99967 * 10 9 7 24 24 H 1.09000 * 109.46988 * 299.99561 * 10 9 7 25 25 H 1.07997 * 124.51696 * 359.97438 * 13 12 11 26 26 H 0.96695 * 114.00255 * 180.02562 * 18 16 15 27 27 H 1.08000 * 123.38008 * 180.24709 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 16 1.3381 -5.2331 0.0013 12 6 2.6267 -6.4348 0.0004 13 6 3.9270 -6.0993 0.0000 14 16 4.9164 -7.4891 -0.0001 15 6 3.5142 -8.5495 0.0013 16 6 3.5575 -10.0123 0.0025 17 8 2.5224 -10.6514 0.0029 18 8 4.7452 -10.6521 0.0030 19 6 2.3761 -7.7900 0.0071 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.8718 -3.6044 0.8905 24 1 2.8717 -3.6045 -0.8895 25 1 4.2972 -5.0847 -0.0003 26 1 4.6725 -11.6164 0.0034 27 1 1.3813 -8.2103 0.0130 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085938409.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:37 Heat of formation + Delta-G solvation = -74.066280 kcal Electronic energy + Delta-G solvation = -13681.265482 eV Core-core repulsion = 11042.552506 eV Total energy + Delta-G solvation = -2638.712976 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.017 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.36694 -37.80785 -36.25054 -33.83076 -31.17871 -30.25519 -25.92491 -25.16764 -22.95551 -21.31513 -19.54970 -18.99782 -17.77443 -16.62728 -16.34025 -15.93133 -15.59308 -14.58064 -14.51121 -14.09348 -13.54021 -13.25694 -13.09800 -12.72632 -12.08748 -11.88907 -11.67997 -11.23285 -11.10025 -10.95559 -10.70651 -10.39304 -9.87217 -9.76336 -9.49720 -9.22505 -9.00217 -8.49900 -7.06895 -6.13930 -4.19319 0.18470 1.23989 1.56097 1.96973 2.14401 2.70753 2.83718 3.07141 3.25569 3.30863 3.32592 4.35217 4.87223 5.02931 5.20841 5.21846 5.49205 5.79094 5.85797 5.97056 5.98411 6.04321 6.54275 7.43314 7.50466 7.51645 7.80260 8.16618 8.84696 9.45131 10.96739 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.054375 B = 0.003798 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.820250 B = 7370.000350 C = 7864.373582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.083 4.083 11 S -0.107 6.107 12 C -0.115 4.115 13 C -0.241 4.241 14 S 0.251 5.749 15 C -0.268 4.268 16 C 0.558 3.442 17 O -0.506 6.506 18 O -0.504 6.504 19 C -0.010 4.010 20 H 0.264 0.736 21 H 0.029 0.971 22 H 0.029 0.971 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.175 0.825 26 H 0.414 0.586 27 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.040 -16.965 0.011 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.231 4.231 11 S 0.136 5.864 12 C -0.239 4.239 13 C -0.390 4.390 14 S 0.518 5.482 15 C -0.388 4.388 16 C 0.401 3.599 17 O -0.396 6.396 18 O -0.315 6.315 19 C -0.048 4.048 20 H 0.074 0.926 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.193 0.807 26 H 0.271 0.729 27 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.995 -16.923 0.011 19.654 hybrid contribution 0.196 0.860 0.000 0.882 sum 10.191 -16.063 0.011 19.024 Atomic orbital electron populations 1.69955 1.06080 1.27154 1.49528 1.25015 0.94932 0.99378 0.94893 0.86552 0.79513 0.82637 0.78688 1.20125 1.21099 1.20118 1.20996 0.92957 0.90047 1.52377 0.92415 1.18920 0.93347 0.89137 0.98773 1.24043 1.02430 0.92718 1.03886 1.85715 1.10174 0.99119 1.91408 1.20706 0.97474 0.97724 1.07981 1.25489 0.97047 1.05598 1.10822 1.82964 1.06020 0.92383 1.66796 1.23386 0.98973 0.94008 1.22446 1.19294 0.81344 0.87026 0.72243 1.90969 1.34539 1.67593 1.46513 1.85012 1.33141 1.27008 1.86297 1.20442 0.99062 0.90455 0.94844 0.92600 0.95310 0.95303 0.90578 0.90569 0.80741 0.72873 0.82296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.29 55.43 0.74 -25.14 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 15 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.52 -14.09 9.11 -34.44 -0.31 -14.41 15 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 15 9 C 0.04 0.92 4.98 -27.88 -0.14 0.78 15 10 C -0.08 -1.62 4.41 37.16 0.16 -1.45 15 11 S -0.11 -1.89 22.01 -107.50 -2.37 -4.26 15 12 C -0.11 -1.72 6.00 -41.13 -0.25 -1.97 15 13 C -0.24 -3.20 10.14 29.34 0.30 -2.90 15 14 S 0.25 2.73 22.91 -107.50 -2.46 0.27 15 15 C -0.27 -3.37 6.45 -36.83 -0.24 -3.61 15 16 C 0.56 6.57 8.27 33.99 0.28 6.85 15 17 O -0.51 -7.26 17.57 -19.38 -0.34 -7.60 15 18 O -0.50 -4.17 13.40 -41.07 -0.55 -4.72 15 19 C -0.01 -0.14 9.85 -40.25 -0.40 -0.54 15 20 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 21 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.08 1.41 7.94 -51.92 -0.41 1.00 15 24 H 0.08 1.42 7.93 -51.92 -0.41 1.00 15 25 H 0.18 2.22 6.64 -52.49 -0.35 1.87 15 26 H 0.41 1.47 8.98 45.56 0.41 1.88 15 27 H 0.16 2.13 8.06 -52.49 -0.42 1.71 15 LS Contribution 276.58 15.07 4.17 4.17 Total: -1.00 -30.81 276.58 -8.10 -38.91 By element: Atomic # 1 Polarization: -0.20 SS G_CDS: -1.57 Total: -1.78 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -0.69 Total: -15.67 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.74 Total: -25.14 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.89 Total: -12.32 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -4.83 Total: -3.99 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.81 -8.10 -38.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085938409.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.159 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds