Wall clock time and date at job start Mon Mar 30 2020 06:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00304 * 2 1 4 4 H 1.48497 * 109.47315 * 240.00046 * 3 2 1 5 5 H 1.48505 * 109.47300 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47529 * 120.00052 * 3 2 1 7 7 C 1.37880 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99634 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99840 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46891 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47199 * 179.97438 * 10 9 7 12 12 C 1.76199 * 103.00071 * 179.97438 * 11 10 9 13 13 C 1.34292 * 122.52751 * 0.02562 * 12 11 10 14 14 S 1.70598 * 110.97592 * 179.97438 * 13 12 11 15 15 C 1.75801 * 91.65297 * 359.97438 * 14 13 12 16 16 C 1.46348 * 125.40483 * 180.02562 * 15 14 13 17 17 O 1.21644 * 119.99764 * 180.02562 * 16 15 14 18 18 O 1.34910 * 120.00568 * 0.02587 * 16 15 14 19 19 C 1.36821 * 109.18377 * 359.76243 * 15 14 13 20 20 H 0.97003 * 119.99697 * 0.02562 * 1 2 3 21 21 H 1.08990 * 109.47548 * 59.99922 * 9 7 2 22 22 H 1.09000 * 109.46946 * 299.99501 * 9 7 2 23 23 H 1.08998 * 109.46864 * 59.99967 * 10 9 7 24 24 H 1.09000 * 109.46988 * 299.99561 * 10 9 7 25 25 H 1.07997 * 124.51696 * 359.97438 * 13 12 11 26 26 H 0.96695 * 114.00255 * 180.02562 * 18 16 15 27 27 H 1.08000 * 123.38008 * 180.24709 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 16 1.3381 -5.2331 0.0013 12 6 2.6267 -6.4348 0.0004 13 6 3.9270 -6.0993 0.0000 14 16 4.9164 -7.4891 -0.0001 15 6 3.5142 -8.5495 0.0013 16 6 3.5575 -10.0123 0.0025 17 8 2.5224 -10.6514 0.0029 18 8 4.7452 -10.6521 0.0030 19 6 2.3761 -7.7900 0.0071 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.8718 -3.6044 0.8905 24 1 2.8717 -3.6045 -0.8895 25 1 4.2972 -5.0847 -0.0003 26 1 4.6725 -11.6164 0.0034 27 1 1.3813 -8.2103 0.0130 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085938409.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:37 Heat of formation + Delta-G solvation = -93.174660 kcal Electronic energy + Delta-G solvation = -13682.094084 eV Core-core repulsion = 11042.552506 eV Total energy + Delta-G solvation = -2639.541578 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.017 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.25669 -38.82718 -37.10420 -35.81622 -33.03816 -31.37537 -27.47359 -26.59599 -24.07969 -23.03711 -20.58695 -19.93899 -18.71913 -18.62600 -17.42502 -16.82446 -16.75360 -16.48103 -15.76382 -15.70721 -14.67246 -14.42259 -14.21599 -14.13436 -13.82743 -13.28712 -12.93566 -12.71742 -12.49843 -12.31531 -12.23725 -11.92647 -11.72022 -11.40716 -11.01817 -10.64541 -10.56763 -9.98490 -8.36743 -8.23234 -6.36531 -0.82006 0.18747 0.49510 0.89910 0.92629 1.42804 1.45232 1.53396 1.70665 1.72768 2.04413 2.40851 3.10703 3.87580 4.12069 4.14440 4.19451 4.29694 4.52334 4.79187 4.86722 4.93418 5.35826 5.36452 5.46251 5.72424 6.09290 6.77230 6.77389 7.33021 8.88219 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.054375 B = 0.003798 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.820250 B = 7370.000350 C = 7864.373582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.042 3.958 10 C -0.068 4.068 11 S -0.136 6.136 12 C -0.127 4.127 13 C -0.251 4.251 14 S 0.344 5.656 15 C -0.281 4.281 16 C 0.566 3.434 17 O -0.537 6.537 18 O -0.491 6.491 19 C -0.027 4.027 20 H 0.265 0.735 21 H 0.000 1.000 22 H 0.000 1.000 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.182 0.818 26 H 0.436 0.564 27 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.032 -17.638 0.010 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.089 0.911 9 C 0.003 3.997 10 C -0.216 4.216 11 S 0.105 5.895 12 C -0.252 4.252 13 C -0.398 4.398 14 S 0.613 5.387 15 C -0.401 4.401 16 C 0.410 3.590 17 O -0.429 6.429 18 O -0.304 6.304 19 C -0.065 4.065 20 H 0.074 0.926 21 H 0.019 0.981 22 H 0.019 0.981 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.199 0.801 26 H 0.298 0.702 27 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 13.044 -17.632 0.010 21.932 hybrid contribution -0.602 0.893 0.000 1.077 sum 12.443 -16.738 0.011 20.857 Atomic orbital electron populations 1.70103 1.07939 1.28125 1.50825 1.26014 0.95782 1.03525 0.94422 0.85408 0.78151 0.77620 0.79314 1.18966 1.21077 1.18954 1.21481 0.93794 0.91076 1.51677 0.91141 1.18695 0.93734 0.91243 0.96011 1.23648 1.01057 0.92049 1.04833 1.85712 1.11923 0.99307 1.92591 1.20474 0.96967 0.97068 1.10666 1.25773 0.97149 1.07423 1.09430 1.82669 1.03163 0.89303 1.63607 1.23617 0.99674 0.95012 1.21770 1.19153 0.81678 0.86698 0.71501 1.90965 1.35844 1.68144 1.47994 1.84957 1.31016 1.29047 1.85388 1.20347 0.99626 0.90177 0.96341 0.92591 0.98138 0.98132 0.89545 0.89537 0.80120 0.70227 0.82868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.53 13.29 21.45 0.28 -55.25 15 2 C 0.00 0.07 5.46 84.66 0.46 0.53 15 3 Si 0.97 42.58 29.54 68.60 2.03 44.60 15 4 H -0.26 -11.07 7.11 99.48 0.71 -10.37 15 5 H -0.29 -12.39 7.11 99.48 0.71 -11.68 15 6 H -0.26 -11.07 7.11 99.48 0.71 -10.36 15 7 C -0.54 -29.31 9.11 25.60 0.23 -29.08 15 8 H 0.07 3.55 7.74 -2.91 -0.02 3.52 15 9 C 0.04 2.15 4.98 29.85 0.15 2.30 15 10 C -0.07 -2.66 4.41 71.98 0.32 -2.35 15 11 S -0.14 -4.93 22.01 -56.49 -1.24 -6.17 15 12 C -0.13 -3.72 6.00 21.27 0.13 -3.59 15 13 C -0.25 -6.09 10.14 66.92 0.68 -5.41 15 14 S 0.34 6.28 22.91 -56.49 -1.29 4.98 15 15 C -0.28 -6.46 6.45 24.05 0.16 -6.31 15 16 C 0.57 12.10 8.27 69.93 0.58 12.68 15 17 O -0.54 -14.80 17.57 19.36 0.34 -14.46 15 18 O -0.49 -6.47 13.40 -58.25 -0.78 -7.25 15 19 C -0.03 -0.74 9.85 21.84 0.22 -0.53 15 20 H 0.27 14.92 8.31 -92.71 -0.77 14.15 15 21 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 15 22 H 0.00 0.02 8.14 -2.39 -0.02 0.00 15 23 H 0.09 3.16 7.94 -2.39 -0.02 3.14 15 24 H 0.09 3.17 7.93 -2.39 -0.02 3.15 15 25 H 0.18 4.15 6.64 -2.91 -0.02 4.13 15 26 H 0.44 1.62 8.98 -74.06 -0.67 0.96 15 27 H 0.15 4.21 8.06 -2.91 -0.02 4.19 15 Total: -1.00 -67.26 276.58 2.79 -64.47 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: 0.54 Total: 0.82 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 2.92 Total: -31.76 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.28 Total: -55.25 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.44 Total: -21.71 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.54 Total: -1.19 kcal Total: -67.26 2.79 -64.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085938409.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.703 kcal (2) G-P(sol) polarization free energy of solvation -67.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds