Wall clock time and date at job start Mon Mar 30 2020 06:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46908 * 111.00168 * 2 1 4 4 C 1.50704 * 109.46701 * 293.95286 * 3 2 1 5 5 H 1.07996 * 120.00099 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99963 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99756 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00048 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47174 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47157 * 120.00155 * 8 6 4 11 11 H 1.48502 * 109.47005 * 239.99882 * 8 6 4 12 12 C 1.46905 * 111.00414 * 123.94995 * 2 1 3 13 13 C 1.52996 * 109.46839 * 88.08991 * 12 2 1 14 14 C 1.53005 * 109.47186 * 185.71014 * 13 12 2 15 15 S 1.81402 * 109.46981 * 56.70259 * 14 13 12 16 16 C 1.53002 * 109.47506 * 305.71131 * 13 12 2 17 17 C 1.53001 * 109.47172 * 179.97438 * 16 13 12 18 18 C 1.53004 * 109.47255 * 300.00203 * 17 16 13 19 19 C 1.53002 * 109.47196 * 59.99811 * 18 17 16 20 20 C 1.53001 * 109.47172 * 300.00239 * 19 18 17 21 21 H 1.09001 * 109.47324 * 304.27811 * 1 2 3 22 22 H 1.08999 * 109.47426 * 64.28200 * 1 2 3 23 23 H 1.08998 * 109.47093 * 184.28394 * 1 2 3 24 24 H 1.08997 * 109.47039 * 53.95287 * 3 2 1 25 25 H 1.09000 * 109.47416 * 173.95533 * 3 2 1 26 26 H 0.96999 * 119.99604 * 180.02562 * 7 6 4 27 27 H 1.09008 * 109.46855 * 328.09637 * 12 2 1 28 28 H 1.08999 * 109.47302 * 208.09638 * 12 2 1 29 29 H 1.08997 * 109.47259 * 176.70201 * 14 13 12 30 30 H 1.09000 * 109.47288 * 296.70349 * 14 13 12 31 31 H 1.34499 * 103.00151 * 185.00184 * 15 14 13 32 32 H 1.08998 * 109.47091 * 300.00386 * 16 13 12 33 33 H 1.09002 * 109.46698 * 59.99799 * 16 13 12 34 34 H 1.08999 * 109.46856 * 180.02562 * 17 16 13 35 35 H 1.08997 * 109.47050 * 60.00002 * 17 16 13 36 36 H 1.09002 * 109.46967 * 300.00381 * 18 17 16 37 37 H 1.08998 * 109.47107 * 179.97438 * 18 17 16 38 38 H 1.08998 * 109.47091 * 179.97438 * 19 18 17 39 39 H 1.09002 * 109.46698 * 60.00405 * 19 18 17 40 40 H 1.08997 * 109.47050 * 299.99998 * 20 19 18 41 41 H 1.08999 * 109.46856 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0746 1.5112 -2.0488 6 6 2.0267 3.3494 -1.5286 7 7 2.7110 4.0022 -0.6147 8 14 1.5817 4.1871 -3.1378 9 1 0.8136 3.2448 -3.9906 10 1 0.7541 5.3881 -2.8584 11 1 2.8231 4.5947 -3.8435 12 6 1.9955 -0.7659 1.1376 13 6 2.1333 -2.2373 0.7417 14 6 2.5454 -3.0583 1.9653 15 16 1.3311 -2.8181 3.2914 16 6 0.7932 -2.7505 0.2109 17 6 0.9314 -4.2217 -0.1856 18 6 1.9974 -4.3585 -1.2746 19 6 3.3375 -3.8454 -0.7439 20 6 3.1993 -2.3741 -0.3473 21 1 -0.3634 0.5788 0.8492 22 1 -0.3634 0.4459 -0.9258 23 1 -0.3633 -1.0248 0.0768 24 1 1.5611 1.9274 0.8309 25 1 3.0797 1.3445 0.1082 26 1 2.9849 4.9185 -0.7765 27 1 1.3111 -0.6794 1.9818 28 1 2.9720 -0.3724 1.4198 29 1 2.5867 -4.1140 1.6974 30 1 3.5272 -2.7318 2.3082 31 1 1.8707 -3.4934 4.3218 32 1 0.0337 -2.6525 0.9866 33 1 0.4998 -2.1655 -0.6608 34 1 -0.0232 -4.5871 -0.5642 35 1 1.2251 -4.8068 0.6858 36 1 1.7037 -3.7733 -2.1461 37 1 2.0961 -5.4067 -1.5568 38 1 4.0970 -3.9432 -1.5195 39 1 3.6312 -4.4306 0.1276 40 1 2.9056 -1.7890 -1.2188 41 1 4.1540 -2.0087 0.0312 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087054241.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:34 Heat of formation + Delta-G solvation = -9.787253 kcal Electronic energy + Delta-G solvation = -18488.027794 eV Core-core repulsion = 15914.567240 eV Total energy + Delta-G solvation = -2573.460554 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.55950 -35.93785 -32.83581 -31.87323 -30.62114 -27.57080 -26.54218 -26.42668 -23.64908 -22.24182 -21.04412 -20.08657 -18.64580 -16.82215 -16.28515 -15.38896 -15.13088 -14.88928 -14.52504 -13.94511 -13.78720 -13.36202 -13.18938 -12.79727 -12.59338 -12.09441 -11.97231 -11.83648 -11.45564 -11.20421 -11.12288 -10.86987 -10.81113 -10.59604 -10.55468 -10.41892 -10.23681 -9.97858 -9.85980 -9.60885 -9.46247 -9.01805 -8.38550 -7.91367 -7.06392 -5.97191 -3.97768 1.71497 2.83411 3.34013 3.41411 3.46179 4.46751 4.78860 4.80197 4.97058 5.05974 5.26037 5.35682 5.38924 5.51066 5.61647 5.63115 5.74643 5.77023 5.81160 5.89286 6.10780 6.20670 6.24742 6.26087 6.32787 6.39740 6.50365 6.52597 6.63339 6.68537 6.75067 6.89127 6.90150 7.38561 7.46153 7.88004 8.17787 8.31489 8.65048 9.10942 9.66319 11.13778 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.025168 B = 0.005801 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.262161 B = 4825.242976 C = 5311.241290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.534 5.534 3 C 0.193 3.807 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.285 1.285 12 C 0.057 3.943 13 C -0.027 4.027 14 C -0.060 4.060 15 S -0.239 6.239 16 C -0.113 4.113 17 C -0.119 4.119 18 C -0.118 4.118 19 C -0.121 4.121 20 C -0.098 4.098 21 H 0.010 0.990 22 H 0.066 0.934 23 H 0.062 0.938 24 H -0.011 1.011 25 H 0.028 0.972 26 H 0.259 0.741 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.090 0.910 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.859 -16.633 3.273 16.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.258 5.258 3 C 0.068 3.932 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.072 4.072 13 C -0.029 4.029 14 C -0.209 4.209 15 S -0.087 6.087 16 C -0.151 4.151 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.159 4.159 20 C -0.137 4.137 21 H 0.029 0.971 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.007 0.993 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.028 0.972 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.319 -16.447 3.382 16.843 hybrid contribution 0.803 0.324 0.188 0.886 sum -0.516 -16.123 3.570 16.522 Atomic orbital electron populations 1.22618 0.89181 1.00013 1.00730 1.61979 1.06690 1.17340 1.39761 1.19766 0.95111 0.81910 0.96394 1.21221 1.34333 0.96797 1.01710 0.91876 1.24988 0.95454 0.97430 0.96861 1.69975 1.38746 1.11308 1.33981 0.86484 0.78090 0.79353 0.83736 1.19693 1.21218 1.21118 1.22200 1.00147 0.91984 0.92877 1.20323 0.96278 0.94644 0.91630 1.23534 0.98313 1.04019 0.95013 1.87628 1.36483 1.72186 1.12424 1.21904 0.96229 0.95013 1.01928 1.21591 0.98393 0.97483 0.98204 1.21523 0.95323 0.99960 0.98746 1.21610 0.97076 0.97085 1.00107 1.21512 0.97408 0.95391 0.99394 0.97136 0.91490 0.91985 0.99322 0.95435 0.93106 0.93568 0.91978 0.89496 0.90346 0.97162 0.91598 0.89258 0.92489 0.92555 0.91668 0.92997 0.92405 0.92895 0.89126 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 8.38 60.06 0.50 0.95 16 2 N -0.53 -11.09 3.80 -244.37 -0.93 -12.02 16 3 C 0.19 5.01 4.64 -4.97 -0.02 4.98 16 4 C -0.50 -14.02 8.57 -34.44 -0.30 -14.31 16 5 H 0.06 1.75 7.10 -52.49 -0.37 1.37 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 8 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.06 1.01 4.09 -3.82 -0.02 0.99 16 13 C -0.03 -0.38 0.36 -154.50 -0.06 -0.43 16 14 C -0.06 -0.72 4.61 37.16 0.17 -0.55 16 15 S -0.24 -3.09 22.85 -107.50 -2.46 -5.55 16 16 C -0.11 -1.53 2.93 -26.73 -0.08 -1.60 16 17 C -0.12 -1.34 5.65 -26.73 -0.15 -1.50 16 18 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 19 C -0.12 -1.37 5.65 -26.73 -0.15 -1.52 16 20 C -0.10 -1.37 4.62 -26.73 -0.12 -1.49 16 21 H 0.01 0.21 8.09 -51.93 -0.42 -0.21 16 22 H 0.07 1.38 6.98 -51.93 -0.36 1.01 16 23 H 0.06 1.02 4.27 -51.93 -0.22 0.80 16 24 H -0.01 -0.31 8.08 -51.93 -0.42 -0.73 16 25 H 0.03 0.76 7.79 -51.93 -0.40 0.36 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.05 0.83 6.23 -51.92 -0.32 0.51 16 28 H 0.06 1.15 7.53 -51.93 -0.39 0.76 16 29 H 0.09 0.93 4.82 -51.93 -0.25 0.68 16 30 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.06 0.75 9.07 97.61 0.89 1.64 16 32 H 0.07 0.92 6.52 -51.93 -0.34 0.58 16 33 H 0.09 1.36 5.80 -51.93 -0.30 1.06 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.61 6.36 -51.93 -0.33 0.28 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.55 6.51 -51.93 -0.34 0.21 16 40 H 0.09 1.50 7.77 -51.93 -0.40 1.10 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 311.74 15.07 4.70 4.70 Total: -1.00 -28.72 311.74 -9.11 -37.83 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.66 Total: -0.94 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -0.47 Total: -14.52 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: -0.19 Total: -38.20 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.46 Total: -5.55 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.72 -9.11 -37.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087054241.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.045 kcal (2) G-P(sol) polarization free energy of solvation -28.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds