Wall clock time and date at job start Mon Mar 30 2020 06:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46908 * 111.00168 * 2 1 4 4 C 1.50704 * 109.46701 * 293.95286 * 3 2 1 5 5 H 1.07996 * 120.00099 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99963 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99756 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00048 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47174 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47157 * 120.00155 * 8 6 4 11 11 H 1.48502 * 109.47005 * 239.99882 * 8 6 4 12 12 C 1.46905 * 111.00414 * 123.94995 * 2 1 3 13 13 C 1.52996 * 109.46839 * 88.08991 * 12 2 1 14 14 C 1.53005 * 109.47186 * 185.71014 * 13 12 2 15 15 S 1.81402 * 109.46981 * 56.70259 * 14 13 12 16 16 C 1.53002 * 109.47506 * 305.71131 * 13 12 2 17 17 C 1.53001 * 109.47172 * 179.97438 * 16 13 12 18 18 C 1.53004 * 109.47255 * 300.00203 * 17 16 13 19 19 C 1.53002 * 109.47196 * 59.99811 * 18 17 16 20 20 C 1.53001 * 109.47172 * 300.00239 * 19 18 17 21 21 H 1.09001 * 109.47324 * 304.27811 * 1 2 3 22 22 H 1.08999 * 109.47426 * 64.28200 * 1 2 3 23 23 H 1.08998 * 109.47093 * 184.28394 * 1 2 3 24 24 H 1.08997 * 109.47039 * 53.95287 * 3 2 1 25 25 H 1.09000 * 109.47416 * 173.95533 * 3 2 1 26 26 H 0.96999 * 119.99604 * 180.02562 * 7 6 4 27 27 H 1.09008 * 109.46855 * 328.09637 * 12 2 1 28 28 H 1.08999 * 109.47302 * 208.09638 * 12 2 1 29 29 H 1.08997 * 109.47259 * 176.70201 * 14 13 12 30 30 H 1.09000 * 109.47288 * 296.70349 * 14 13 12 31 31 H 1.34499 * 103.00151 * 185.00184 * 15 14 13 32 32 H 1.08998 * 109.47091 * 300.00386 * 16 13 12 33 33 H 1.09002 * 109.46698 * 59.99799 * 16 13 12 34 34 H 1.08999 * 109.46856 * 180.02562 * 17 16 13 35 35 H 1.08997 * 109.47050 * 60.00002 * 17 16 13 36 36 H 1.09002 * 109.46967 * 300.00381 * 18 17 16 37 37 H 1.08998 * 109.47107 * 179.97438 * 18 17 16 38 38 H 1.08998 * 109.47091 * 179.97438 * 19 18 17 39 39 H 1.09002 * 109.46698 * 60.00405 * 19 18 17 40 40 H 1.08997 * 109.47050 * 299.99998 * 20 19 18 41 41 H 1.08999 * 109.46856 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0746 1.5112 -2.0488 6 6 2.0267 3.3494 -1.5286 7 7 2.7110 4.0022 -0.6147 8 14 1.5817 4.1871 -3.1378 9 1 0.8136 3.2448 -3.9906 10 1 0.7541 5.3881 -2.8584 11 1 2.8231 4.5947 -3.8435 12 6 1.9955 -0.7659 1.1376 13 6 2.1333 -2.2373 0.7417 14 6 2.5454 -3.0583 1.9653 15 16 1.3311 -2.8181 3.2914 16 6 0.7932 -2.7505 0.2109 17 6 0.9314 -4.2217 -0.1856 18 6 1.9974 -4.3585 -1.2746 19 6 3.3375 -3.8454 -0.7439 20 6 3.1993 -2.3741 -0.3473 21 1 -0.3634 0.5788 0.8492 22 1 -0.3634 0.4459 -0.9258 23 1 -0.3633 -1.0248 0.0768 24 1 1.5611 1.9274 0.8309 25 1 3.0797 1.3445 0.1082 26 1 2.9849 4.9185 -0.7765 27 1 1.3111 -0.6794 1.9818 28 1 2.9720 -0.3724 1.4198 29 1 2.5867 -4.1140 1.6974 30 1 3.5272 -2.7318 2.3082 31 1 1.8707 -3.4934 4.3218 32 1 0.0337 -2.6525 0.9866 33 1 0.4998 -2.1655 -0.6608 34 1 -0.0232 -4.5871 -0.5642 35 1 1.2251 -4.8068 0.6858 36 1 1.7037 -3.7733 -2.1461 37 1 2.0961 -5.4067 -1.5568 38 1 4.0970 -3.9432 -1.5195 39 1 3.6312 -4.4306 0.1276 40 1 2.9056 -1.7890 -1.2188 41 1 4.1540 -2.0087 0.0312 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087054241.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:34 Heat of formation + Delta-G solvation = -26.026128 kcal Electronic energy + Delta-G solvation = -18488.731965 eV Core-core repulsion = 15914.567240 eV Total energy + Delta-G solvation = -2574.164724 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.74376 -37.54633 -34.72891 -33.26612 -31.67219 -29.38926 -27.99767 -27.74392 -25.43245 -23.31299 -22.55006 -21.49796 -19.75140 -18.47265 -17.81052 -16.75679 -16.60875 -16.34961 -15.81882 -15.45799 -15.18387 -14.71623 -14.37942 -14.17108 -13.81271 -13.72721 -13.46615 -13.07555 -12.94784 -12.74971 -12.61086 -12.43160 -12.40055 -12.18224 -11.92133 -11.72728 -11.50479 -11.40313 -11.31306 -10.96176 -10.70806 -10.60261 -10.50333 -9.04728 -8.74232 -8.17007 -6.26623 0.72942 1.42276 1.42489 1.56368 1.87432 2.42668 3.15476 3.38293 3.74898 3.81939 4.03129 4.24492 4.32034 4.38922 4.53210 4.55870 4.60150 4.64967 4.73943 4.81720 4.83469 4.89480 4.97048 5.03218 5.14985 5.19432 5.25950 5.30074 5.37036 5.42769 5.49848 5.52856 5.55281 5.64689 5.70387 5.80552 6.10930 6.41807 6.73619 6.91397 7.43225 8.94290 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.025168 B = 0.005801 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.262161 B = 4825.242976 C = 5311.241290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.531 5.531 3 C 0.210 3.790 4 C -0.516 4.516 5 H 0.064 0.936 6 C -0.001 4.001 7 N -0.937 5.937 8 Si 0.968 3.032 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.279 1.279 12 C 0.058 3.942 13 C -0.019 4.019 14 C -0.050 4.050 15 S -0.268 6.268 16 C -0.111 4.111 17 C -0.113 4.113 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.096 4.096 21 H -0.001 1.001 22 H 0.052 0.948 23 H 0.096 0.904 24 H -0.045 1.045 25 H 0.001 0.999 26 H 0.263 0.737 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.176 -18.833 2.627 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.255 5.255 3 C 0.083 3.917 4 C -0.555 4.555 5 H 0.082 0.918 6 C -0.199 4.199 7 N -0.578 5.578 8 Si 0.793 3.207 9 H -0.186 1.186 10 H -0.206 1.206 11 H -0.204 1.204 12 C -0.071 4.071 13 C -0.021 4.021 14 C -0.199 4.199 15 S -0.116 6.116 16 C -0.149 4.149 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.152 4.152 20 C -0.136 4.136 21 H 0.017 0.983 22 H 0.071 0.929 23 H 0.114 0.886 24 H -0.028 1.028 25 H 0.019 0.981 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.129 0.871 30 H 0.102 0.898 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.642 -18.673 2.739 18.944 hybrid contribution 0.915 0.995 0.466 1.430 sum -0.727 -17.678 3.204 17.981 Atomic orbital electron populations 1.22635 0.88093 1.01825 0.99432 1.61933 1.07606 1.14408 1.41542 1.19411 0.93330 0.84323 0.94626 1.21514 1.34329 0.97356 1.02284 0.91816 1.25919 0.95158 0.98155 1.00618 1.70106 1.39764 1.11788 1.36187 0.85349 0.78025 0.78195 0.79136 1.18607 1.20618 1.20446 1.22279 0.98871 0.94098 0.91814 1.20184 0.97034 0.92076 0.92801 1.23463 0.98067 1.04827 0.93501 1.87768 1.37172 1.72934 1.13773 1.21817 0.95485 0.96710 1.00851 1.21548 0.99193 0.95465 0.98803 1.21524 0.94795 1.01010 0.98112 1.21574 0.97686 0.94857 1.01119 1.21440 0.96860 0.97259 0.98005 0.98289 0.92891 0.88582 1.02772 0.98082 0.92835 0.93743 0.93665 0.87062 0.89770 0.95150 0.91841 0.91314 0.91420 0.91199 0.93043 0.90792 0.91792 0.90953 0.92331 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 8.38 127.69 1.07 2.18 16 2 N -0.53 -22.89 3.80 -927.04 -3.52 -26.41 16 3 C 0.21 11.42 4.64 85.56 0.40 11.82 16 4 C -0.52 -29.67 8.57 25.60 0.22 -29.45 16 5 H 0.06 3.58 7.10 -2.91 -0.02 3.56 16 6 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 7 N -0.94 -57.53 13.29 21.45 0.28 -57.25 16 8 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 9 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 C 0.06 2.10 4.09 86.30 0.35 2.45 16 13 C -0.02 -0.52 0.36 -52.18 -0.02 -0.54 16 14 C -0.05 -1.09 4.61 71.98 0.33 -0.76 16 15 S -0.27 -6.46 22.85 -56.49 -1.29 -7.75 16 16 C -0.11 -2.82 2.93 30.60 0.09 -2.73 16 17 C -0.11 -2.19 5.65 30.60 0.17 -2.02 16 18 C -0.12 -2.24 5.92 30.60 0.18 -2.06 16 19 C -0.11 -2.31 5.65 30.60 0.17 -2.14 16 20 C -0.10 -2.63 4.62 30.60 0.14 -2.49 16 21 H 0.00 -0.06 8.09 -2.39 -0.02 -0.08 16 22 H 0.05 2.22 6.98 -2.39 -0.02 2.20 16 23 H 0.10 3.13 4.27 -2.39 -0.01 3.11 16 24 H -0.05 -2.73 8.08 -2.39 -0.02 -2.75 16 25 H 0.00 0.06 7.79 -2.39 -0.02 0.05 16 26 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 27 H 0.04 1.62 6.23 -2.38 -0.01 1.61 16 28 H 0.04 1.76 7.53 -2.39 -0.02 1.74 16 29 H 0.11 1.94 4.82 -2.39 -0.01 1.93 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 1.76 9.07 73.35 0.67 2.43 16 32 H 0.06 1.65 6.52 -2.39 -0.02 1.64 16 33 H 0.07 2.03 5.80 -2.39 -0.01 2.02 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.20 6.36 -2.39 -0.02 1.19 16 36 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.20 6.51 -2.39 -0.02 1.19 16 40 H 0.06 1.98 7.77 -2.39 -0.02 1.96 16 41 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -63.42 311.74 2.74 -60.68 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.67 Total: 9.12 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: 3.57 Total: -25.33 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -3.24 Total: -83.66 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: -6.46 SS G_CDS: -1.29 Total: -7.75 kcal Total: -63.42 2.74 -60.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087054241.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.653 kcal (2) G-P(sol) polarization free energy of solvation -63.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds