Wall clock time and date at job start Mon Mar 30 2020 06:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31427 * 1 3 3 Si 1.86802 * 119.99844 * 2 1 4 4 H 1.48500 * 109.46977 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47191 * 300.00255 * 3 2 1 6 6 H 1.48498 * 109.47368 * 60.00171 * 3 2 1 7 7 C 1.38791 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00247 * 179.97438 * 7 2 1 9 9 O 1.34863 * 119.99995 * 359.97438 * 7 2 1 10 10 C 1.34792 * 117.00377 * 179.97438 * 9 7 2 11 11 O 1.21566 * 119.99748 * 0.02562 * 10 9 7 12 12 C 1.47186 * 120.00527 * 179.97438 * 10 9 7 13 13 C 1.39854 * 120.21896 * 0.02562 * 12 10 9 14 14 C 1.37693 * 119.91989 * 180.02562 * 13 12 10 15 15 C 1.38685 * 120.38372 * 359.97438 * 14 13 12 16 16 C 1.37902 * 120.45628 * 359.97438 * 15 14 13 17 17 C 1.39041 * 120.06391 * 0.02562 * 16 15 14 18 18 S 1.76204 * 120.19003 * 179.97438 * 17 16 15 19 19 Cl 2.02000 * 100.00095 * 270.00217 * 18 17 16 20 20 H 0.96993 * 120.00196 * 359.97438 * 1 2 3 21 21 H 1.07995 * 120.03790 * 359.97438 * 13 12 10 22 22 H 1.07997 * 119.81092 * 180.02562 * 14 13 12 23 23 H 1.08003 * 119.76608 * 179.72839 * 15 14 13 24 24 H 1.07998 * 119.97037 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8895 2.3965 1.2125 7 6 2.0083 -1.2019 -0.0005 8 1 3.0883 -1.2019 -0.0010 9 8 1.3340 -2.3699 -0.0005 10 6 2.0682 -3.5004 -0.0016 11 8 3.2822 -3.4367 -0.0021 12 6 1.4001 -4.8119 -0.0011 13 6 0.0037 -4.8905 -0.0001 14 6 -0.6149 -6.1207 0.0009 15 6 0.1388 -7.2848 0.0004 16 6 1.5166 -7.2255 -0.0017 17 6 2.1608 -5.9934 -0.0028 18 16 3.9210 -5.9137 -0.0048 19 17 4.2737 -5.8975 1.9842 20 1 -0.4850 0.8400 0.0004 21 1 -0.5886 -3.9875 0.0008 22 1 -1.6932 -6.1794 0.0013 23 1 -0.3567 -8.2444 0.0056 24 1 2.0958 -8.1371 -0.0017 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101451247.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:19 Heat of formation + Delta-G solvation = -73.633806 kcal Electronic energy + Delta-G solvation = -14413.762792 eV Core-core repulsion = 11637.191769 eV Total energy + Delta-G solvation = -2776.571024 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 257.990 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.22017 -39.60740 -37.39939 -37.15429 -34.33885 -32.44375 -32.12356 -27.73543 -25.15714 -23.85979 -22.06420 -19.86825 -19.46020 -18.70580 -17.42752 -16.78008 -16.48684 -16.42926 -15.87047 -15.59285 -14.97911 -14.42075 -14.27314 -13.66794 -13.37647 -13.28003 -13.05772 -12.99083 -12.48755 -12.36067 -12.18979 -12.00314 -11.46737 -11.23194 -10.70645 -10.15281 -10.08032 -8.58952 -8.34212 -6.31698 -1.43561 -0.20017 0.23359 0.83266 1.33775 1.35498 1.51917 1.82096 2.08836 2.66298 2.68449 3.02280 3.74600 4.02747 4.15798 4.27774 4.39801 4.70319 4.93503 5.12281 5.22152 5.22572 5.35913 5.76950 5.81277 6.64652 6.87885 7.74361 8.63125 Molecular weight = 257.99amu Principal moments of inertia in cm(-1) A = 0.024235 B = 0.007233 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.093930 B = 3870.013387 C = 4776.274734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.003 4.003 3 Si 1.016 2.984 4 H -0.265 1.265 5 H -0.258 1.258 6 H -0.261 1.261 7 C -0.410 4.410 8 H 0.084 0.916 9 O -0.235 6.235 10 C 0.413 3.587 11 O -0.534 6.534 12 C -0.070 4.070 13 C -0.099 4.099 14 C -0.075 4.075 15 C -0.094 4.094 16 C -0.053 4.053 17 C -0.141 4.141 18 S 0.104 5.896 19 Cl -0.160 7.160 20 H 0.280 0.720 21 H 0.125 0.875 22 H 0.174 0.826 23 H 0.187 0.813 24 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 -14.813 -0.245 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.204 4.204 3 Si 0.835 3.165 4 H -0.189 1.189 5 H -0.183 1.183 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.101 0.899 9 O -0.144 6.144 10 C 0.260 3.740 11 O -0.430 6.430 12 C -0.075 4.075 13 C -0.119 4.119 14 C -0.093 4.093 15 C -0.114 4.114 16 C -0.075 4.075 17 C -0.254 4.254 18 S 0.227 5.773 19 Cl -0.159 7.159 20 H 0.089 0.911 21 H 0.144 0.856 22 H 0.191 0.809 23 H 0.205 0.795 24 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.272 -14.596 -0.230 14.600 hybrid contribution -0.437 1.222 0.762 1.504 sum -0.709 -13.374 0.531 13.404 Atomic orbital electron populations 1.70054 1.07565 1.29405 1.46362 1.26520 0.96907 1.02171 0.94779 0.84581 0.77850 0.74775 0.79263 1.18921 1.18265 1.18501 1.21522 0.92365 0.80941 1.53738 0.89852 1.83916 1.40141 1.13935 1.76414 1.21619 0.86568 0.86502 0.79326 1.90811 1.14880 1.87639 1.49700 1.19630 0.95142 0.89859 1.02838 1.21699 0.92149 1.00653 0.97390 1.21835 1.02644 0.90536 0.94308 1.21946 0.92580 1.00445 0.96381 1.21999 0.96057 0.95474 0.93934 1.22422 0.97651 0.95408 1.09921 1.87890 0.99925 1.97913 0.91601 1.98674 1.94719 1.99948 1.22521 0.91090 0.85650 0.80901 0.79543 0.80935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.59 13.67 21.63 0.30 -52.29 14 2 C 0.00 -0.18 5.50 84.89 0.47 0.29 14 3 Si 1.02 43.79 29.55 68.60 2.03 45.82 14 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 14 5 H -0.26 -10.34 7.11 99.48 0.71 -9.64 14 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 14 7 C -0.41 -25.16 9.65 67.95 0.66 -24.50 14 8 H 0.08 5.21 6.86 -2.91 -0.02 5.19 14 9 O -0.24 -14.12 8.99 10.64 0.10 -14.02 14 10 C 0.41 21.89 7.81 70.17 0.55 22.44 14 11 O -0.53 -29.64 13.02 19.62 0.26 -29.39 14 12 C -0.07 -2.89 5.89 -19.98 -0.12 -3.01 14 13 C -0.10 -3.38 9.61 22.53 0.22 -3.17 14 14 C -0.08 -1.64 10.02 22.25 0.22 -1.42 14 15 C -0.09 -1.62 10.02 22.30 0.22 -1.40 14 16 C -0.05 -1.21 9.79 22.38 0.22 -0.99 14 17 C -0.14 -4.79 5.63 23.02 0.13 -4.66 14 18 S 0.10 3.72 19.85 -56.49 -1.12 2.60 14 19 Cl -0.16 -5.81 29.37 -2.72 -0.08 -5.89 14 20 H 0.28 14.80 8.31 -92.71 -0.77 14.03 14 21 H 0.13 4.82 7.61 -2.91 -0.02 4.80 14 22 H 0.17 2.41 8.06 -2.91 -0.02 2.39 14 23 H 0.19 1.34 8.06 -2.91 -0.02 1.31 14 24 H 0.17 2.70 8.06 -2.91 -0.02 2.67 14 Total: -1.00 -74.55 256.64 5.27 -69.27 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: 1.24 Total: 0.32 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 2.56 Total: -16.42 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.30 Total: -52.29 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: 0.35 Total: -43.41 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.12 Total: 2.60 kcal Atomic # 17 Polarization: -5.81 SS G_CDS: -0.08 Total: -5.89 kcal Total: -74.55 5.27 -69.27 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101451247.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.360 kcal (2) G-P(sol) polarization free energy of solvation -74.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds