Wall clock time and date at job start Mon Mar 30 2020 07:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46929 * 2 1 4 4 C 1.52998 * 109.46827 * 239.99697 * 2 1 3 5 5 C 1.50695 * 109.47368 * 65.00213 * 4 2 1 6 6 H 1.08006 * 119.99985 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00168 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99832 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00002 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47194 * 89.99548 * 9 7 5 11 11 H 1.48497 * 109.47146 * 210.00103 * 9 7 5 12 12 H 1.48503 * 109.46846 * 329.99729 * 9 7 5 13 13 C 1.50702 * 109.47087 * 119.99484 * 2 1 3 14 14 C 1.38215 * 119.98693 * 239.99507 * 13 2 1 15 15 C 1.38363 * 120.01322 * 179.70262 * 14 13 2 16 16 Cl 1.73599 * 120.00875 * 180.25611 * 15 14 13 17 17 C 1.38335 * 119.98688 * 0.28162 * 15 14 13 18 18 C 1.38333 * 119.97332 * 0.02562 * 17 15 14 19 19 Cl 1.73591 * 120.00595 * 179.97438 * 18 17 15 20 20 C 1.38230 * 119.98695 * 60.25706 * 13 2 1 21 21 H 1.08993 * 109.46862 * 60.00277 * 1 2 3 22 22 H 1.09004 * 109.46620 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46574 * 300.00174 * 1 2 3 24 24 H 1.09009 * 109.46847 * 184.99944 * 4 2 1 25 25 H 1.09006 * 109.47474 * 304.99370 * 4 2 1 26 26 H 0.97001 * 119.99923 * 179.97438 * 8 7 5 27 27 H 1.08002 * 119.99636 * 359.97438 * 14 13 2 28 28 H 1.07994 * 120.01618 * 179.97438 * 17 15 14 29 29 H 1.08000 * 119.99001 * 359.97438 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9932 -0.4020 -3.7283 8 7 2.6772 -1.5185 -3.8510 9 14 1.4985 0.5624 -5.2497 10 1 2.5631 1.5427 -5.5823 11 1 1.3122 -0.3718 -6.3889 12 1 0.2267 1.2827 -4.9872 13 6 2.0324 -0.7103 1.2305 14 6 2.8271 -0.0383 2.1401 15 6 3.2835 -0.6881 3.2731 16 17 4.2761 0.1580 4.4187 17 6 2.9491 -2.0124 3.4927 18 6 2.1590 -2.6863 2.5788 19 17 1.7394 -4.3482 2.8531 20 6 1.7027 -2.0352 1.4465 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 3.1264 -0.7995 -1.2056 25 1 1.6054 -1.7200 -1.2950 26 1 2.9244 -1.8415 -4.7316 27 1 3.0882 0.9955 1.9685 28 1 3.3054 -2.5201 4.3767 29 1 1.0848 -2.5609 0.7335 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107500490.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:54 Heat of formation + Delta-G solvation = -28.895553 kcal Electronic energy + Delta-G solvation = -14413.748079 eV Core-core repulsion = 11772.906439 eV Total energy + Delta-G solvation = -2640.841639 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.73278 -37.75346 -37.71367 -36.40270 -34.32866 -31.67571 -30.97144 -28.76623 -25.83465 -24.14233 -23.58386 -20.93629 -18.66291 -17.93291 -16.94817 -16.68200 -16.39777 -15.46611 -15.06216 -14.93363 -14.64779 -14.27400 -13.65743 -13.34321 -13.23296 -12.92743 -12.83919 -12.79833 -12.50509 -12.25955 -12.12712 -11.95483 -11.83837 -11.62334 -11.18937 -11.05999 -10.51950 -9.74455 -9.72238 -8.15851 -6.25285 -0.01401 0.08749 0.78208 1.25561 1.42985 1.43148 1.53858 2.41157 2.46380 3.18341 3.62537 3.96195 3.97285 4.13144 4.23525 4.47439 4.55386 4.59836 4.85126 4.99893 5.05768 5.11027 5.26786 5.40395 5.45247 5.54392 5.58379 5.80490 5.87747 6.27480 6.90610 7.43341 8.95799 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.021999 B = 0.005405 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.503301 B = 5179.180550 C = 5920.877565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.046 4.046 3 H 0.076 0.924 4 C 0.041 3.959 5 C -0.530 4.530 6 H 0.067 0.933 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.958 3.042 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.261 1.261 13 C -0.044 4.044 14 C -0.110 4.110 15 C -0.023 4.023 16 Cl -0.052 7.052 17 C -0.112 4.112 18 C -0.025 4.025 19 Cl -0.057 7.057 20 C -0.109 4.109 21 H 0.056 0.944 22 H 0.046 0.954 23 H 0.064 0.936 24 H -0.015 1.015 25 H -0.003 1.003 26 H 0.261 0.739 27 H 0.149 0.851 28 H 0.161 0.839 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.942 0.582 15.811 15.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.064 4.064 3 H 0.094 0.906 4 C 0.004 3.996 5 C -0.568 4.568 6 H 0.085 0.915 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.783 3.217 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.185 1.185 13 C -0.044 4.044 14 C -0.129 4.129 15 C -0.050 4.050 16 Cl -0.023 7.023 17 C -0.131 4.131 18 C -0.052 4.052 19 Cl -0.028 7.028 20 C -0.128 4.128 21 H 0.075 0.925 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.003 0.997 25 H 0.015 0.985 26 H 0.070 0.930 27 H 0.166 0.834 28 H 0.178 0.822 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.826 0.397 15.824 15.850 hybrid contribution 0.093 -0.017 -1.043 1.047 sum -0.733 0.380 14.781 14.804 Atomic orbital electron populations 1.21675 0.93452 1.01531 1.01550 1.20226 0.96841 0.98681 0.90663 0.90581 1.18998 0.94178 0.94779 0.91671 1.21645 1.34581 1.08767 0.91790 0.91532 1.25906 0.95247 0.95986 1.02561 1.70101 1.40167 1.22912 1.24262 0.85547 0.79078 0.78366 0.78682 1.20098 1.21263 1.18494 1.20062 0.95379 0.93421 0.95555 1.21236 0.97597 1.01568 0.92506 1.20715 0.98261 0.92970 0.93047 1.98367 1.67943 1.77157 1.58830 1.20967 0.98843 0.92803 1.00532 1.20735 1.01017 0.86803 0.96639 1.98364 1.92289 1.16089 1.96095 1.21093 1.00713 0.94656 0.96317 0.92489 0.93444 0.91734 0.99689 0.98465 0.93000 0.83366 0.82164 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.26 8.82 71.98 0.63 -3.63 15 2 C -0.05 -1.74 2.51 -11.54 -0.03 -1.76 15 3 H 0.08 2.80 7.87 -2.39 -0.02 2.78 15 4 C 0.04 2.04 4.18 29.85 0.12 2.16 15 5 C -0.53 -28.57 8.41 25.60 0.22 -28.36 15 6 H 0.07 3.40 7.06 -2.91 -0.02 3.38 15 7 C 0.00 0.03 5.46 84.66 0.46 0.49 15 8 N -0.93 -55.96 13.29 21.45 0.28 -55.67 15 9 Si 0.96 43.28 29.54 68.60 2.03 45.30 15 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 15 11 H -0.29 -12.87 7.11 99.48 0.71 -12.16 15 12 H -0.26 -11.14 7.11 99.48 0.71 -10.44 15 13 C -0.04 -1.45 4.78 -19.87 -0.09 -1.55 15 14 C -0.11 -3.18 9.45 22.29 0.21 -2.97 15 15 C -0.02 -0.59 6.32 22.32 0.14 -0.45 15 16 Cl -0.05 -1.15 28.96 -2.72 -0.08 -1.22 15 17 C -0.11 -2.81 9.62 22.32 0.21 -2.59 15 18 C -0.03 -0.71 6.32 22.32 0.14 -0.56 15 19 Cl -0.06 -1.46 28.96 -2.72 -0.08 -1.54 15 20 C -0.11 -3.55 8.54 22.30 0.19 -3.35 15 21 H 0.06 2.07 6.95 -2.39 -0.02 2.06 15 22 H 0.05 1.61 7.40 -2.39 -0.02 1.59 15 23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 15 24 H -0.02 -0.85 8.14 -2.38 -0.02 -0.87 15 25 H 0.00 -0.16 7.56 -2.38 -0.02 -0.18 15 26 H 0.26 14.83 8.31 -92.71 -0.77 14.06 15 27 H 0.15 3.84 7.94 -2.91 -0.02 3.82 15 28 H 0.16 3.22 8.06 -2.91 -0.02 3.20 15 29 H 0.13 4.44 7.16 -2.91 -0.02 4.42 15 Total: -1.00 -59.20 281.06 5.52 -53.69 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: 1.15 Total: 2.03 kcal Atomic # 6 Polarization: -44.79 SS G_CDS: 2.21 Total: -42.58 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.28 Total: -55.67 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 17 Polarization: -2.61 SS G_CDS: -0.16 Total: -2.76 kcal Total: -59.20 5.52 -53.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107500490.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.791 kcal (2) G-P(sol) polarization free energy of solvation -59.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds