Wall clock time and date at job start Mon Mar 30 2020 07:01:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09002 * 109.47087 * 2 1
4 4 C 1.52999 * 109.46814 * 119.99976 * 2 1 3
5 5 C 1.50701 * 109.47293 * 294.99776 * 4 2 1
6 6 H 1.07995 * 119.99886 * 0.02562 * 5 4 2
7 7 C 1.37878 * 119.99854 * 180.02562 * 5 4 2
8 8 N 1.31519 * 120.00365 * 0.02562 * 7 5 4
9 9 Si 1.86799 * 119.99935 * 180.02562 * 7 5 4
10 10 H 1.48495 * 109.47100 * 59.99880 * 9 7 5
11 11 H 1.48497 * 109.47173 * 180.02562 * 9 7 5
12 12 H 1.48498 * 109.47030 * 300.00040 * 9 7 5
13 13 C 1.50696 * 109.46955 * 239.99863 * 2 1 3
14 14 C 1.38339 * 120.01204 * 120.00440 * 13 2 1
15 15 Cl 1.73599 * 120.00437 * 359.97438 * 14 13 2
16 16 C 1.38354 * 119.98618 * 180.02562 * 14 13 2
17 17 C 1.38227 * 120.01511 * 0.02562 * 16 14 13
18 18 C 1.38219 * 120.02402 * 0.26314 * 17 16 14
19 19 C 1.38335 * 120.01553 * 300.02331 * 13 2 1
20 20 Cl 1.73592 * 120.00526 * 359.97438 * 19 13 2
21 21 H 1.09001 * 109.46984 * 299.99868 * 1 2 3
22 22 H 1.08997 * 109.46790 * 59.99732 * 1 2 3
23 23 H 1.09002 * 109.47087 * 179.97438 * 1 2 3
24 24 H 1.08999 * 109.46958 * 55.00416 * 4 2 1
25 25 H 1.09003 * 109.47229 * 174.99723 * 4 2 1
26 26 H 0.96994 * 120.00122 * 179.97438 * 8 7 5
27 27 H 1.08001 * 119.99569 * 179.97438 * 16 14 13
28 28 H 1.08002 * 119.98464 * 179.97438 * 17 16 14
29 29 H 1.08002 * 119.99110 * 179.72220 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0399 -0.7213 1.2493
5 6 1.6413 0.0571 2.4766
6 1 1.0800 0.9742 2.3757
7 6 1.9932 -0.4017 3.7283
8 7 2.6772 -1.5183 3.8512
9 14 1.4985 0.5626 5.2497
10 1 0.0185 0.6681 5.3092
11 1 1.9946 -0.1367 6.4621
12 1 2.0896 1.9234 5.1871
13 6 2.0323 -0.7104 -1.2304
14 6 2.8277 -0.0384 -2.1412
15 17 3.2469 1.6238 -1.8672
16 6 3.2881 -0.6910 -3.2709
17 6 2.9531 -2.0141 -3.4900
18 6 2.1535 -2.6842 -2.5834
19 6 1.6979 -2.0347 -1.4499
20 17 0.7000 -2.8788 -0.3075
21 1 -0.3633 0.5138 0.8900
22 1 -0.3633 0.5139 -0.8900
23 1 -0.3633 -1.0277 -0.0005
24 1 1.6053 -1.7198 1.2951
25 1 3.1263 -0.7996 1.2057
26 1 2.9250 -1.8409 4.7317
27 1 3.9088 -0.1664 -3.9823
28 1 3.3124 -2.5229 -4.3723
29 1 1.8883 -3.7167 -2.7573
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000107501624.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:01:57
Heat of formation + Delta-G solvation = -2.278943 kcal
Electronic energy + Delta-G solvation = -14949.691197 eV
Core-core repulsion = 12310.003741 eV
Total energy + Delta-G solvation = -2639.687456 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 258.027 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-39.47914 -36.42715 -35.94819 -35.03400 -32.30652 -30.39799 -29.45575 -26.82467
-24.01551 -22.70205 -22.09025 -19.47344 -17.07876 -16.40021 -15.56036 -15.13802
-14.44662 -14.06829 -13.76112 -13.46107 -13.04783 -12.48511 -12.20642 -12.16856
-11.62549 -11.46333 -11.35310 -10.93972 -10.87579 -10.65395 -10.41019 -10.36306
-10.09822 -9.55960 -9.29570 -8.76911 -8.49171 -8.29010 -8.17564 -5.92097
-3.92541 1.19296 1.35634 2.22174 2.65087 3.37238 3.41581 3.43999
3.67019 4.51219 4.87538 5.02429 5.12520 5.39318 5.43709 5.57644
5.80703 5.97845 6.19414 6.25550 6.31327 6.39169 6.51580 6.76467
6.93610 7.10952 7.14408 7.75236 7.91826 8.08861 8.49353 9.12233
9.69111 11.19124
Molecular weight = 258.03amu
Principal moments of inertia in cm(-1)
A = 0.022562 B = 0.007727 C = 0.006407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1240.715520 B = 3622.623596 C = 4369.199801
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.063 4.063
3 H 0.079 0.921
4 C 0.021 3.979
5 C -0.511 4.511
6 H 0.055 0.945
7 C 0.058 3.942
8 N -0.894 5.894
9 Si 0.887 3.113
10 H -0.277 1.277
11 H -0.288 1.288
12 H -0.278 1.278
13 C -0.036 4.036
14 C -0.031 4.031
15 Cl -0.060 7.060
16 C -0.110 4.110
17 C -0.117 4.117
18 C -0.109 4.109
19 C -0.023 4.023
20 Cl -0.036 7.036
21 H 0.068 0.932
22 H 0.030 0.970
23 H 0.064 0.936
24 H 0.045 0.955
25 H 0.011 0.989
26 H 0.259 0.741
27 H 0.133 0.867
28 H 0.134 0.866
29 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.823 -0.752 -14.708 14.750
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.082 4.082
3 H 0.098 0.902
4 C -0.016 4.016
5 C -0.549 4.549
6 H 0.073 0.927
7 C -0.143 4.143
8 N -0.534 5.534
9 Si 0.715 3.285
10 H -0.203 1.203
11 H -0.214 1.214
12 H -0.203 1.203
13 C -0.037 4.037
14 C -0.058 4.058
15 Cl -0.031 7.031
16 C -0.129 4.129
17 C -0.135 4.135
18 C -0.128 4.128
19 C -0.050 4.050
20 Cl -0.006 7.006
21 H 0.087 0.913
22 H 0.049 0.951
23 H 0.083 0.917
24 H 0.063 0.937
25 H 0.030 0.970
26 H 0.069 0.931
27 H 0.151 0.849
28 H 0.152 0.848
29 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -0.800 -0.798 -14.439 14.483
hybrid contribution -0.123 0.575 1.018 1.175
sum -0.923 -0.222 -13.421 13.454
Atomic orbital electron populations
1.21968 0.94745 1.02821 1.00515 1.20605 0.95990 0.99883 0.91693
0.90240 1.19417 0.96141 0.97176 0.88879 1.21139 1.34723 1.08213
0.90858 0.92710 1.24961 0.95383 0.95068 0.98853 1.69959 1.38918
1.21161 1.23358 0.86736 0.78869 0.80179 0.82685 1.20308 1.21414
1.20348 1.20133 0.94546 0.92468 0.96592 1.20697 1.01506 0.86852
0.96777 1.98352 1.92071 1.16540 1.96181 1.21045 1.00424 0.94998
0.96392 1.20889 0.98994 0.93911 0.99703 1.21120 0.98150 1.00457
0.93082 1.20685 0.98798 0.92614 0.92893 1.98368 1.67091 1.76348
1.58825 0.91291 0.95124 0.91745 0.93729 0.97039 0.93107 0.84948
0.84772 0.84827
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.81 8.75 37.16 0.33 -2.48 15
2 C -0.06 -1.34 2.30 -91.77 -0.21 -1.55 15
3 H 0.08 1.70 6.17 -51.93 -0.32 1.38 15
4 C 0.02 0.53 4.13 -27.88 -0.12 0.42 15
5 C -0.51 -14.32 8.41 -34.44 -0.29 -14.61 15
6 H 0.05 1.49 7.06 -52.49 -0.37 1.12 15
7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15
8 N -0.89 -26.94 13.29 55.43 0.74 -26.20 15
9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 15
10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15
11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15
12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15
13 C -0.04 -0.67 4.79 -104.55 -0.50 -1.17 15
14 C -0.03 -0.51 6.31 -39.50 -0.25 -0.76 15
15 Cl -0.06 -0.96 27.00 -51.86 -1.40 -2.36 15
16 C -0.11 -1.45 9.83 -39.54 -0.39 -1.83 15
17 C -0.12 -1.39 10.04 -39.59 -0.40 -1.79 15
18 C -0.11 -1.49 9.83 -39.54 -0.39 -1.88 15
19 C -0.02 -0.39 6.03 -39.50 -0.24 -0.63 15
20 Cl -0.04 -0.65 22.52 -51.86 -1.17 -1.82 15
21 H 0.07 1.42 6.95 -51.93 -0.36 1.06 15
22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 15
23 H 0.06 1.24 4.94 -51.93 -0.26 0.98 15
24 H 0.04 1.17 5.06 -51.93 -0.26 0.91 15
25 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 15
26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15
27 H 0.13 1.39 8.06 -52.49 -0.42 0.97 15
28 H 0.13 1.13 8.06 -52.49 -0.42 0.71 15
29 H 0.13 1.50 8.06 -52.49 -0.42 1.07 15
LS Contribution 268.50 15.07 4.05 4.05
Total: -1.00 -30.06 268.50 -8.18 -38.24
By element:
Atomic # 1 Polarization: -1.19 SS G_CDS: -2.82 Total: -4.01 kcal
Atomic # 6 Polarization: -22.16 SS G_CDS: -2.55 Total: -24.71 kcal
Atomic # 7 Polarization: -26.94 SS G_CDS: 0.74 Total: -26.20 kcal
Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal
Atomic # 17 Polarization: -1.61 SS G_CDS: -2.57 Total: -4.18 kcal
Total LS contribution 4.05 Total: 4.05 kcal
Total: -30.06 -8.18 -38.24 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000107501624.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.957 kcal
(2) G-P(sol) polarization free energy of solvation -30.058 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.899 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.279 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds