Wall clock time and date at job start Mon Mar 30 2020 07:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47087 * 2 1 4 4 C 1.52999 * 109.46814 * 119.99976 * 2 1 3 5 5 C 1.50701 * 109.47293 * 294.99776 * 4 2 1 6 6 H 1.07995 * 119.99886 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99854 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00365 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99935 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47100 * 59.99880 * 9 7 5 11 11 H 1.48497 * 109.47173 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47030 * 300.00040 * 9 7 5 13 13 C 1.50696 * 109.46955 * 239.99863 * 2 1 3 14 14 C 1.38339 * 120.01204 * 120.00440 * 13 2 1 15 15 Cl 1.73599 * 120.00437 * 359.97438 * 14 13 2 16 16 C 1.38354 * 119.98618 * 180.02562 * 14 13 2 17 17 C 1.38227 * 120.01511 * 0.02562 * 16 14 13 18 18 C 1.38219 * 120.02402 * 0.26314 * 17 16 14 19 19 C 1.38335 * 120.01553 * 300.02331 * 13 2 1 20 20 Cl 1.73592 * 120.00526 * 359.97438 * 19 13 2 21 21 H 1.09001 * 109.46984 * 299.99868 * 1 2 3 22 22 H 1.08997 * 109.46790 * 59.99732 * 1 2 3 23 23 H 1.09002 * 109.47087 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46958 * 55.00416 * 4 2 1 25 25 H 1.09003 * 109.47229 * 174.99723 * 4 2 1 26 26 H 0.96994 * 120.00122 * 179.97438 * 8 7 5 27 27 H 1.08001 * 119.99569 * 179.97438 * 16 14 13 28 28 H 1.08002 * 119.98464 * 179.97438 * 17 16 14 29 29 H 1.08002 * 119.99110 * 179.72220 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9932 -0.4017 3.7283 8 7 2.6772 -1.5183 3.8512 9 14 1.4985 0.5626 5.2497 10 1 0.0185 0.6681 5.3092 11 1 1.9946 -0.1367 6.4621 12 1 2.0896 1.9234 5.1871 13 6 2.0323 -0.7104 -1.2304 14 6 2.8277 -0.0384 -2.1412 15 17 3.2469 1.6238 -1.8672 16 6 3.2881 -0.6910 -3.2709 17 6 2.9531 -2.0141 -3.4900 18 6 2.1535 -2.6842 -2.5834 19 6 1.6979 -2.0347 -1.4499 20 17 0.7000 -2.8788 -0.3075 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6053 -1.7198 1.2951 25 1 3.1263 -0.7996 1.2057 26 1 2.9250 -1.8409 4.7317 27 1 3.9088 -0.1664 -3.9823 28 1 3.3124 -2.5229 -4.3723 29 1 1.8883 -3.7167 -2.7573 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107501624.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:57 Heat of formation + Delta-G solvation = -2.278943 kcal Electronic energy + Delta-G solvation = -14949.691197 eV Core-core repulsion = 12310.003741 eV Total energy + Delta-G solvation = -2639.687456 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.47914 -36.42715 -35.94819 -35.03400 -32.30652 -30.39799 -29.45575 -26.82467 -24.01551 -22.70205 -22.09025 -19.47344 -17.07876 -16.40021 -15.56036 -15.13802 -14.44662 -14.06829 -13.76112 -13.46107 -13.04783 -12.48511 -12.20642 -12.16856 -11.62549 -11.46333 -11.35310 -10.93972 -10.87579 -10.65395 -10.41019 -10.36306 -10.09822 -9.55960 -9.29570 -8.76911 -8.49171 -8.29010 -8.17564 -5.92097 -3.92541 1.19296 1.35634 2.22174 2.65087 3.37238 3.41581 3.43999 3.67019 4.51219 4.87538 5.02429 5.12520 5.39318 5.43709 5.57644 5.80703 5.97845 6.19414 6.25550 6.31327 6.39169 6.51580 6.76467 6.93610 7.10952 7.14408 7.75236 7.91826 8.08861 8.49353 9.12233 9.69111 11.19124 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.022562 B = 0.007727 C = 0.006407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.715520 B = 3622.623596 C = 4369.199801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 H 0.079 0.921 4 C 0.021 3.979 5 C -0.511 4.511 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C -0.036 4.036 14 C -0.031 4.031 15 Cl -0.060 7.060 16 C -0.110 4.110 17 C -0.117 4.117 18 C -0.109 4.109 19 C -0.023 4.023 20 Cl -0.036 7.036 21 H 0.068 0.932 22 H 0.030 0.970 23 H 0.064 0.936 24 H 0.045 0.955 25 H 0.011 0.989 26 H 0.259 0.741 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 -0.752 -14.708 14.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 H 0.098 0.902 4 C -0.016 4.016 5 C -0.549 4.549 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.037 4.037 14 C -0.058 4.058 15 Cl -0.031 7.031 16 C -0.129 4.129 17 C -0.135 4.135 18 C -0.128 4.128 19 C -0.050 4.050 20 Cl -0.006 7.006 21 H 0.087 0.913 22 H 0.049 0.951 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.030 0.970 26 H 0.069 0.931 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.800 -0.798 -14.439 14.483 hybrid contribution -0.123 0.575 1.018 1.175 sum -0.923 -0.222 -13.421 13.454 Atomic orbital electron populations 1.21968 0.94745 1.02821 1.00515 1.20605 0.95990 0.99883 0.91693 0.90240 1.19417 0.96141 0.97176 0.88879 1.21139 1.34723 1.08213 0.90858 0.92710 1.24961 0.95383 0.95068 0.98853 1.69959 1.38918 1.21161 1.23358 0.86736 0.78869 0.80179 0.82685 1.20308 1.21414 1.20348 1.20133 0.94546 0.92468 0.96592 1.20697 1.01506 0.86852 0.96777 1.98352 1.92071 1.16540 1.96181 1.21045 1.00424 0.94998 0.96392 1.20889 0.98994 0.93911 0.99703 1.21120 0.98150 1.00457 0.93082 1.20685 0.98798 0.92614 0.92893 1.98368 1.67091 1.76348 1.58825 0.91291 0.95124 0.91745 0.93729 0.97039 0.93107 0.84948 0.84772 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.75 37.16 0.33 -2.48 15 2 C -0.06 -1.34 2.30 -91.77 -0.21 -1.55 15 3 H 0.08 1.70 6.17 -51.93 -0.32 1.38 15 4 C 0.02 0.53 4.13 -27.88 -0.12 0.42 15 5 C -0.51 -14.32 8.41 -34.44 -0.29 -14.61 15 6 H 0.05 1.49 7.06 -52.49 -0.37 1.12 15 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 8 N -0.89 -26.94 13.29 55.43 0.74 -26.20 15 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 15 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15 13 C -0.04 -0.67 4.79 -104.55 -0.50 -1.17 15 14 C -0.03 -0.51 6.31 -39.50 -0.25 -0.76 15 15 Cl -0.06 -0.96 27.00 -51.86 -1.40 -2.36 15 16 C -0.11 -1.45 9.83 -39.54 -0.39 -1.83 15 17 C -0.12 -1.39 10.04 -39.59 -0.40 -1.79 15 18 C -0.11 -1.49 9.83 -39.54 -0.39 -1.88 15 19 C -0.02 -0.39 6.03 -39.50 -0.24 -0.63 15 20 Cl -0.04 -0.65 22.52 -51.86 -1.17 -1.82 15 21 H 0.07 1.42 6.95 -51.93 -0.36 1.06 15 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 15 23 H 0.06 1.24 4.94 -51.93 -0.26 0.98 15 24 H 0.04 1.17 5.06 -51.93 -0.26 0.91 15 25 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 15 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 27 H 0.13 1.39 8.06 -52.49 -0.42 0.97 15 28 H 0.13 1.13 8.06 -52.49 -0.42 0.71 15 29 H 0.13 1.50 8.06 -52.49 -0.42 1.07 15 LS Contribution 268.50 15.07 4.05 4.05 Total: -1.00 -30.06 268.50 -8.18 -38.24 By element: Atomic # 1 Polarization: -1.19 SS G_CDS: -2.82 Total: -4.01 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: -2.55 Total: -24.71 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.74 Total: -26.20 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -2.57 Total: -4.18 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.06 -8.18 -38.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107501624.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.957 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds