Wall clock time and date at job start Mon Mar 30 2020 07:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47087 * 2 1 4 4 C 1.52999 * 109.46814 * 119.99976 * 2 1 3 5 5 C 1.50701 * 109.47293 * 294.99776 * 4 2 1 6 6 H 1.07995 * 119.99886 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99854 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00365 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99935 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47100 * 59.99880 * 9 7 5 11 11 H 1.48497 * 109.47173 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47030 * 300.00040 * 9 7 5 13 13 C 1.50696 * 109.46955 * 239.99863 * 2 1 3 14 14 C 1.38339 * 120.01204 * 120.00440 * 13 2 1 15 15 Cl 1.73599 * 120.00437 * 359.97438 * 14 13 2 16 16 C 1.38354 * 119.98618 * 180.02562 * 14 13 2 17 17 C 1.38227 * 120.01511 * 0.02562 * 16 14 13 18 18 C 1.38219 * 120.02402 * 0.26314 * 17 16 14 19 19 C 1.38335 * 120.01553 * 300.02331 * 13 2 1 20 20 Cl 1.73592 * 120.00526 * 359.97438 * 19 13 2 21 21 H 1.09001 * 109.46984 * 299.99868 * 1 2 3 22 22 H 1.08997 * 109.46790 * 59.99732 * 1 2 3 23 23 H 1.09002 * 109.47087 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46958 * 55.00416 * 4 2 1 25 25 H 1.09003 * 109.47229 * 174.99723 * 4 2 1 26 26 H 0.96994 * 120.00122 * 179.97438 * 8 7 5 27 27 H 1.08001 * 119.99569 * 179.97438 * 16 14 13 28 28 H 1.08002 * 119.98464 * 179.97438 * 17 16 14 29 29 H 1.08002 * 119.99110 * 179.72220 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9932 -0.4017 3.7283 8 7 2.6772 -1.5183 3.8512 9 14 1.4985 0.5626 5.2497 10 1 0.0185 0.6681 5.3092 11 1 1.9946 -0.1367 6.4621 12 1 2.0896 1.9234 5.1871 13 6 2.0323 -0.7104 -1.2304 14 6 2.8277 -0.0384 -2.1412 15 17 3.2469 1.6238 -1.8672 16 6 3.2881 -0.6910 -3.2709 17 6 2.9531 -2.0141 -3.4900 18 6 2.1535 -2.6842 -2.5834 19 6 1.6979 -2.0347 -1.4499 20 17 0.7000 -2.8788 -0.3075 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6053 -1.7198 1.2951 25 1 3.1263 -0.7996 1.2057 26 1 2.9250 -1.8409 4.7317 27 1 3.9088 -0.1664 -3.9823 28 1 3.3124 -2.5229 -4.3723 29 1 1.8883 -3.7167 -2.7573 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107501624.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:57 Heat of formation + Delta-G solvation = -18.062734 kcal Electronic energy + Delta-G solvation = -14950.375634 eV Core-core repulsion = 12310.003741 eV Total energy + Delta-G solvation = -2640.371893 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.70817 -37.70049 -37.20614 -36.67431 -34.33827 -31.53330 -30.88621 -28.73795 -25.77504 -24.02971 -23.48228 -21.02932 -18.67495 -17.98785 -17.03890 -16.55111 -16.19454 -15.24705 -15.09267 -14.87647 -14.70790 -14.20343 -13.99809 -13.44505 -13.09193 -12.87909 -12.81690 -12.67724 -12.55128 -12.26570 -12.09897 -11.73055 -11.69456 -11.43457 -11.13937 -10.66586 -10.28558 -9.65478 -9.58508 -8.12155 -6.19588 0.05508 0.18460 0.99468 1.39791 1.40088 1.42458 1.49742 2.43635 2.53994 3.21059 3.72882 3.93605 3.97301 4.30962 4.48399 4.50624 4.53638 4.61451 4.91529 5.06615 5.18015 5.25811 5.31586 5.35473 5.47566 5.57621 5.70225 5.84167 6.00147 6.33675 6.94835 7.46178 8.99251 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.022562 B = 0.007727 C = 0.006407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.715520 B = 3622.623596 C = 4369.199801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.055 4.055 3 H 0.070 0.930 4 C 0.028 3.972 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.003 3.997 8 N -0.931 5.931 9 Si 0.953 3.047 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.271 1.271 13 C -0.069 4.069 14 C -0.046 4.046 15 Cl -0.066 7.066 16 C -0.102 4.102 17 C -0.095 4.095 18 C -0.106 4.106 19 C -0.042 4.042 20 Cl -0.058 7.058 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.038 0.962 25 H -0.029 1.029 26 H 0.260 0.740 27 H 0.165 0.835 28 H 0.183 0.817 29 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.712 -0.777 -16.651 16.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.073 4.073 3 H 0.088 0.912 4 C -0.009 4.009 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.779 3.221 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.196 1.196 13 C -0.071 4.071 14 C -0.072 4.072 15 Cl -0.037 7.037 16 C -0.121 4.121 17 C -0.113 4.113 18 C -0.124 4.124 19 C -0.069 4.069 20 Cl -0.028 7.028 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.056 0.944 25 H -0.010 1.010 26 H 0.069 0.931 27 H 0.182 0.818 28 H 0.201 0.799 29 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.698 -0.810 -16.393 16.428 hybrid contribution -0.099 0.551 1.493 1.594 sum -0.796 -0.259 -14.900 14.924 Atomic orbital electron populations 1.21904 0.93916 1.03025 1.00725 1.20298 0.96745 0.98999 0.91307 0.91217 1.19262 0.93478 0.97347 0.90835 1.21558 1.34358 1.08391 0.92107 0.92538 1.25818 0.95381 0.96037 1.02151 1.70096 1.40208 1.22825 1.24067 0.85678 0.78947 0.78828 0.78680 1.19245 1.21040 1.19581 1.19927 0.97092 0.93430 0.96607 1.20912 1.01770 0.86862 0.97704 1.98345 1.92067 1.17001 1.96321 1.21488 0.99592 0.95595 0.95397 1.21466 0.96564 0.93163 1.00119 1.21515 0.97426 1.01695 0.91779 1.20908 0.99726 0.92406 0.93892 1.98351 1.67852 1.76567 1.60077 0.92993 0.92825 0.91581 0.94415 1.01017 0.93097 0.81762 0.79942 0.82163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.50 8.75 71.98 0.63 -4.87 15 2 C -0.05 -2.38 2.30 -11.54 -0.03 -2.41 15 3 H 0.07 3.08 6.17 -2.39 -0.01 3.06 15 4 C 0.03 1.48 4.13 29.85 0.12 1.61 15 5 C -0.53 -30.29 8.41 25.60 0.22 -30.08 15 6 H 0.06 3.15 7.06 -2.91 -0.02 3.13 15 7 C 0.00 0.20 5.46 84.65 0.46 0.67 15 8 N -0.93 -57.54 13.29 21.45 0.28 -57.26 15 9 Si 0.95 45.33 29.54 68.60 2.03 47.36 15 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 15 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 15 13 C -0.07 -2.54 4.79 -19.82 -0.09 -2.64 15 14 C -0.05 -1.43 6.31 22.32 0.14 -1.29 15 15 Cl -0.07 -2.06 27.00 -2.72 -0.07 -2.14 15 16 C -0.10 -2.32 9.83 22.29 0.22 -2.10 15 17 C -0.10 -1.82 10.04 22.26 0.22 -1.60 15 18 C -0.11 -2.56 9.83 22.29 0.22 -2.34 15 19 C -0.04 -1.42 6.03 22.32 0.13 -1.29 15 20 Cl -0.06 -2.12 22.52 -2.72 -0.06 -2.18 15 21 H 0.05 2.18 6.95 -2.39 -0.02 2.16 15 22 H 0.05 1.83 8.14 -2.39 -0.02 1.81 15 23 H 0.07 2.58 4.94 -2.39 -0.01 2.57 15 24 H 0.04 2.06 5.06 -2.39 -0.01 2.05 15 25 H -0.03 -1.73 8.14 -2.39 -0.02 -1.75 15 26 H 0.26 15.23 8.31 -92.71 -0.77 14.46 15 27 H 0.16 2.67 8.06 -2.91 -0.02 2.65 15 28 H 0.18 1.81 8.06 -2.91 -0.02 1.79 15 29 H 0.16 2.99 8.06 -2.91 -0.02 2.96 15 Total: -1.00 -67.08 268.50 5.59 -61.49 By element: Atomic # 1 Polarization: -2.12 SS G_CDS: 1.17 Total: -0.96 kcal Atomic # 6 Polarization: -48.57 SS G_CDS: 2.25 Total: -46.33 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.28 Total: -57.26 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 17 Polarization: -4.18 SS G_CDS: -0.13 Total: -4.31 kcal Total: -67.08 5.59 -61.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107501624.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.429 kcal (2) G-P(sol) polarization free energy of solvation -67.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds