Wall clock time and date at job start Mon Mar 30 2020 07:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.53004 * 109.46798 * 240.00265 * 2 1 3 5 5 C 1.50701 * 109.47211 * 65.00508 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 C 1.50699 * 109.47084 * 120.00492 * 2 1 3 14 14 C 1.38239 * 119.99274 * 59.72377 * 13 2 1 15 15 C 1.38201 * 120.02196 * 179.72855 * 14 13 2 16 16 C 1.38382 * 120.01801 * 0.54601 * 15 14 13 17 17 Cl 1.73599 * 120.00883 * 179.74724 * 16 15 14 18 18 C 1.38312 * 119.98099 * 359.73198 * 16 15 14 19 19 C 1.38337 * 119.99296 * 240.00159 * 13 2 1 20 20 Cl 1.73599 * 120.00576 * 359.97438 * 19 13 2 21 21 H 1.08990 * 109.47425 * 299.99608 * 1 2 3 22 22 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 23 23 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47211 * 304.99535 * 4 2 1 25 25 H 1.09007 * 109.46376 * 185.00077 * 4 2 1 26 26 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 27 27 H 1.07998 * 119.98906 * 359.97438 * 14 13 2 28 28 H 1.08010 * 119.99241 * 180.24998 * 15 14 13 29 29 H 1.08003 * 120.01018 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0801 0.9744 -2.3756 7 6 1.9879 -0.4048 -3.7286 8 7 2.6711 -1.5218 -3.8515 9 14 1.4871 0.5560 -5.2502 10 1 2.0789 1.9169 -5.1935 11 1 1.9779 -0.1465 -6.4630 12 1 0.0068 0.6618 -5.3040 13 6 2.0324 -0.7105 1.2304 14 6 1.6936 -2.0323 1.4518 15 6 2.1585 -2.6862 2.5771 16 6 2.9542 -2.0147 3.4887 17 17 3.5327 -2.8343 4.9055 18 6 3.2887 -0.6905 3.2706 19 6 2.8276 -0.0381 2.1410 20 17 3.2475 1.6237 1.8661 21 1 -0.3634 0.5137 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.6054 -1.7198 -1.2952 25 1 3.1264 -0.7994 -1.2056 26 1 2.9146 -1.8469 -4.7323 27 1 1.0687 -2.5554 0.7431 28 1 1.8969 -3.7201 2.7475 29 1 3.9100 -0.1661 3.9815 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107533535.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:03 Heat of formation + Delta-G solvation = -26.880991 kcal Electronic energy + Delta-G solvation = -14549.130184 eV Core-core repulsion = 11908.375902 eV Total energy + Delta-G solvation = -2640.754281 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.72428 -37.85534 -37.38454 -36.51258 -34.32003 -31.89126 -30.72876 -28.72943 -25.77521 -24.26545 -23.49280 -20.86346 -18.70053 -18.14424 -17.01398 -16.56150 -16.20620 -15.27590 -15.05564 -14.96410 -14.62511 -14.25462 -13.80779 -13.37612 -13.25163 -12.99785 -12.84397 -12.76058 -12.39682 -12.24152 -12.10864 -11.97127 -11.81187 -11.48320 -11.16822 -10.99970 -10.50472 -9.93659 -9.49710 -8.15530 -6.24600 0.01260 0.11188 0.84549 1.31678 1.42187 1.44051 1.51521 2.42210 2.48153 3.18277 3.70302 3.80756 3.97296 4.19387 4.36116 4.45364 4.59835 4.71228 4.78379 5.01003 5.08032 5.13363 5.27812 5.40198 5.44649 5.55165 5.61847 5.80326 5.88464 6.28826 6.90115 7.43526 8.95838 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.029324 B = 0.005371 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.611479 B = 5212.035080 C = 5666.563056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.056 4.056 3 H 0.073 0.927 4 C 0.047 3.953 5 C -0.530 4.530 6 H 0.062 0.938 7 C 0.003 3.997 8 N -0.932 5.932 9 Si 0.956 3.044 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.265 1.265 13 C -0.059 4.059 14 C -0.098 4.098 15 C -0.097 4.097 16 C -0.039 4.039 17 Cl -0.054 7.054 18 C -0.101 4.101 19 C -0.040 4.040 20 Cl -0.061 7.061 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.002 0.998 25 H -0.019 1.019 26 H 0.262 0.738 27 H 0.142 0.858 28 H 0.161 0.839 29 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.139 -0.103 15.727 15.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.075 4.075 3 H 0.091 0.909 4 C 0.010 3.990 5 C -0.568 4.568 6 H 0.081 0.919 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.781 3.219 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.190 1.190 13 C -0.060 4.060 14 C -0.116 4.116 15 C -0.116 4.116 16 C -0.066 4.066 17 Cl -0.025 7.025 18 C -0.120 4.120 19 C -0.067 4.067 20 Cl -0.032 7.032 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.020 0.980 25 H -0.001 1.001 26 H 0.070 0.930 27 H 0.159 0.841 28 H 0.179 0.821 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.978 -0.133 15.710 15.741 hybrid contribution 0.188 0.374 -1.028 1.109 sum -0.790 0.241 14.682 14.706 Atomic orbital electron populations 1.21649 0.93314 1.01783 1.01251 1.20336 0.97000 0.99163 0.90979 0.90865 1.18933 0.93925 0.94804 0.91368 1.21586 1.34721 1.08633 0.91878 0.91946 1.25866 0.95234 0.95990 1.02403 1.70082 1.40134 1.22778 1.24294 0.85635 0.79058 0.78755 0.78431 1.19548 1.21199 1.19019 1.20211 0.95522 0.94969 0.95292 1.21111 1.00032 0.93114 0.97369 1.21357 0.96193 1.01458 0.92564 1.20726 1.01358 0.92934 0.91593 1.98363 1.87660 1.78361 1.38085 1.20970 1.00806 0.93339 0.96857 1.20764 1.01819 0.87018 0.97070 1.98349 1.92156 1.16559 1.96111 0.92236 0.92658 0.92743 0.97986 1.00054 0.92955 0.84074 0.82142 0.82498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.33 8.81 71.98 0.63 -3.69 15 2 C -0.06 -2.25 2.41 -11.54 -0.03 -2.27 15 3 H 0.07 3.00 6.17 -2.39 -0.01 2.98 15 4 C 0.05 2.37 4.19 29.85 0.13 2.50 15 5 C -0.53 -29.13 8.41 25.60 0.22 -28.91 15 6 H 0.06 3.29 7.06 -2.91 -0.02 3.26 15 7 C 0.00 0.16 5.46 84.65 0.46 0.62 15 8 N -0.93 -55.92 13.29 21.45 0.28 -55.63 15 9 Si 0.96 43.72 29.54 68.60 2.03 45.75 15 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 11 H -0.29 -12.94 7.11 99.48 0.71 -12.23 15 12 H -0.27 -11.57 7.11 99.48 0.71 -10.87 15 13 C -0.06 -2.03 4.78 -19.84 -0.09 -2.13 15 14 C -0.10 -2.99 8.76 22.26 0.20 -2.80 15 15 C -0.10 -2.45 9.83 22.30 0.22 -2.23 15 16 C -0.04 -0.97 6.32 22.32 0.14 -0.83 15 17 Cl -0.05 -1.12 28.96 -2.72 -0.08 -1.20 15 18 C -0.10 -2.63 9.62 22.31 0.21 -2.42 15 19 C -0.04 -1.24 6.31 22.32 0.14 -1.10 15 20 Cl -0.06 -1.86 27.00 -2.72 -0.07 -1.93 15 21 H 0.06 1.78 8.14 -2.39 -0.02 1.76 15 22 H 0.05 2.08 6.95 -2.39 -0.02 2.06 15 23 H 0.05 1.82 7.37 -2.39 -0.02 1.80 15 24 H 0.00 0.10 7.58 -2.39 -0.02 0.08 15 25 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 15 26 H 0.26 14.88 8.31 -92.71 -0.77 14.11 15 27 H 0.14 4.28 7.16 -2.91 -0.02 4.26 15 28 H 0.16 3.15 8.06 -2.91 -0.02 3.13 15 29 H 0.16 3.42 8.06 -2.91 -0.02 3.39 15 Total: -1.00 -60.47 278.00 5.54 -54.93 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: 1.16 Total: 1.35 kcal Atomic # 6 Polarization: -45.49 SS G_CDS: 2.22 Total: -43.27 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.28 Total: -55.63 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 17 Polarization: -2.98 SS G_CDS: -0.15 Total: -3.13 kcal Total: -60.47 5.54 -54.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107533535.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.049 kcal (2) G-P(sol) polarization free energy of solvation -60.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds