Wall clock time and date at job start Mon Mar 30 2020 07:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47187 * 2 1 4 4 C 1.52997 * 109.47121 * 119.99928 * 2 1 3 5 5 C 1.50702 * 109.47384 * 294.99860 * 4 2 1 6 6 H 1.08010 * 119.99536 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00492 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99681 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00453 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46839 * 59.99744 * 9 7 5 11 11 H 1.48503 * 109.47467 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47075 * 299.99856 * 9 7 5 13 13 C 1.50698 * 109.47219 * 240.00183 * 2 1 3 14 14 C 1.38259 * 119.98451 * 119.99777 * 13 2 1 15 15 C 1.38203 * 120.04176 * 180.02562 * 14 13 2 16 16 C 1.38345 * 119.99944 * 0.02562 * 15 14 13 17 17 Cl 1.73596 * 120.02199 * 179.70285 * 16 15 14 18 18 C 1.38447 * 119.96072 * 359.97438 * 16 15 14 19 19 Cl 1.73606 * 120.02005 * 179.97438 * 18 16 15 20 20 C 1.38212 * 119.97867 * 300.01902 * 13 2 1 21 21 H 1.08994 * 109.46771 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46717 * 300.00090 * 1 2 3 23 23 H 1.09001 * 109.47093 * 59.99801 * 1 2 3 24 24 H 1.08995 * 109.47636 * 55.00214 * 4 2 1 25 25 H 1.09000 * 109.46931 * 175.00490 * 4 2 1 26 26 H 0.97000 * 119.99422 * 180.02562 * 8 7 5 27 27 H 1.08001 * 119.98388 * 359.97438 * 14 13 2 28 28 H 1.08000 * 120.00675 * 179.97438 * 15 14 13 29 29 H 1.07999 * 119.99776 * 359.97438 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 1 1.0800 0.9743 2.3757 7 6 1.9933 -0.4016 3.7282 8 7 2.6773 -1.5182 3.8511 9 14 1.4985 0.5628 5.2497 10 1 0.0185 0.6683 5.3092 11 1 1.9936 -0.1372 6.4622 12 1 2.0897 1.9236 5.1871 13 6 2.0324 -0.7104 -1.2305 14 6 2.8272 -0.0381 -2.1403 15 6 3.2881 -0.6882 -3.2694 16 6 2.9538 -2.0124 -3.4901 17 17 3.5260 -2.8274 -4.9120 18 6 2.1579 -2.6856 -2.5790 19 17 1.7369 -4.3472 -2.8547 20 6 1.6979 -2.0335 -1.4490 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.6055 -1.7197 1.2952 25 1 3.1263 -0.7993 1.2056 26 1 2.9246 -1.8410 4.7317 27 1 3.0874 0.9960 -1.9691 28 1 3.9086 -0.1624 -3.9800 29 1 1.0770 -2.5580 -0.7378 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107563011.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:05 Heat of formation + Delta-G solvation = -15.624708 kcal Electronic energy + Delta-G solvation = -14440.100119 eV Core-core repulsion = 11799.833947 eV Total energy + Delta-G solvation = -2640.266172 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.48356 -36.70175 -36.39167 -34.89155 -32.36275 -30.72284 -29.33904 -26.95663 -24.10420 -22.93189 -22.07950 -19.42682 -17.17772 -16.41255 -15.63498 -15.30188 -14.55473 -13.94366 -13.79316 -13.69616 -13.06912 -12.58487 -12.33447 -11.79077 -11.76406 -11.70544 -11.30266 -11.00416 -10.95053 -10.86793 -10.83312 -10.49336 -10.43892 -9.94474 -9.47734 -9.13595 -8.74252 -8.40119 -8.28098 -6.04468 -4.07461 1.17044 1.30680 1.96116 2.33931 3.29967 3.35343 3.36757 3.67916 4.41488 4.77674 5.05386 5.28631 5.31239 5.42712 5.52257 5.75012 5.97366 6.09506 6.14511 6.16192 6.34077 6.53147 6.77500 6.83056 6.96186 7.01011 7.58638 7.69800 7.93103 8.33560 8.97923 9.56629 11.06509 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.034335 B = 0.004865 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.289102 B = 5754.285979 C = 6049.745278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.056 4.056 3 H 0.072 0.928 4 C 0.033 3.967 5 C -0.520 4.520 6 H 0.057 0.943 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C -0.034 4.034 14 C -0.109 4.109 15 C -0.100 4.100 16 C -0.048 4.048 17 Cl -0.067 7.067 18 C -0.027 4.027 19 Cl -0.061 7.061 20 C -0.092 4.092 21 H 0.049 0.951 22 H 0.069 0.931 23 H 0.035 0.965 24 H 0.020 0.980 25 H 0.017 0.983 26 H 0.262 0.738 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 -0.346 -14.675 14.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.075 4.075 3 H 0.090 0.910 4 C -0.004 4.004 5 C -0.559 4.559 6 H 0.075 0.925 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.202 1.202 13 C -0.034 4.034 14 C -0.127 4.127 15 C -0.119 4.119 16 C -0.075 4.075 17 Cl -0.038 7.038 18 C -0.054 4.054 19 Cl -0.032 7.032 20 C -0.111 4.111 21 H 0.068 0.932 22 H 0.088 0.912 23 H 0.054 0.946 24 H 0.038 0.962 25 H 0.036 0.964 26 H 0.071 0.929 27 H 0.154 0.846 28 H 0.154 0.846 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.555 -0.699 -14.695 14.722 hybrid contribution -0.097 0.168 0.770 0.794 sum -0.652 -0.531 -13.925 13.950 Atomic orbital electron populations 1.21744 0.94792 1.01413 1.00827 1.20474 0.95729 0.99103 0.92173 0.90968 1.19168 0.96402 0.95455 0.89377 1.21152 1.35315 1.08541 0.90846 0.92455 1.25009 0.95148 0.95054 0.99112 1.69958 1.38488 1.21068 1.23693 0.86676 0.78908 0.80101 0.82430 1.20227 1.21323 1.20245 1.20467 0.93945 0.93078 0.95940 1.21206 0.97696 1.00624 0.93215 1.20947 1.00456 0.91868 0.98608 1.20636 1.02204 0.93901 0.90803 1.98352 1.87902 1.79299 1.38234 1.20759 1.01099 0.86705 0.96833 1.98364 1.92194 1.16529 1.96135 1.21019 1.00260 0.94661 0.95129 0.93239 0.91172 0.94628 0.96154 0.96428 0.92876 0.84644 0.84574 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.82 37.16 0.33 -1.93 15 2 C -0.06 -1.06 2.51 -91.77 -0.23 -1.29 15 3 H 0.07 1.32 7.88 -51.93 -0.41 0.91 15 4 C 0.03 0.79 4.19 -27.88 -0.12 0.68 15 5 C -0.52 -13.83 8.41 -34.44 -0.29 -14.12 15 6 H 0.06 1.46 7.06 -52.48 -0.37 1.09 15 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 8 N -0.89 -26.12 13.29 55.43 0.74 -25.39 15 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 15 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 13 C -0.03 -0.56 4.78 -104.62 -0.50 -1.06 15 14 C -0.11 -1.55 9.67 -39.59 -0.38 -1.94 15 15 C -0.10 -1.31 9.83 -39.55 -0.39 -1.70 15 16 C -0.05 -0.69 6.32 -39.47 -0.25 -0.94 15 17 Cl -0.07 -0.86 27.96 -51.86 -1.45 -2.31 15 18 C -0.03 -0.41 6.32 -39.47 -0.25 -0.66 15 19 Cl -0.06 -0.88 27.96 -51.86 -1.45 -2.33 15 20 C -0.09 -1.52 8.54 -39.55 -0.34 -1.86 15 21 H 0.05 0.84 7.39 -51.93 -0.38 0.46 15 22 H 0.07 1.29 6.95 -51.93 -0.36 0.93 15 23 H 0.03 0.53 8.14 -51.93 -0.42 0.10 15 24 H 0.02 0.52 7.57 -51.93 -0.39 0.13 15 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 26 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 27 H 0.14 1.65 7.94 -52.49 -0.42 1.23 15 28 H 0.14 1.42 8.06 -52.49 -0.42 1.00 15 29 H 0.14 2.42 7.16 -52.49 -0.38 2.04 15 LS Contribution 279.51 15.07 4.21 4.21 Total: -1.00 -28.04 279.51 -8.60 -36.64 By element: Atomic # 1 Polarization: -0.39 SS G_CDS: -3.11 Total: -3.51 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -2.52 Total: -23.31 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.74 Total: -25.39 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -2.90 Total: -4.64 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.04 -8.60 -36.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107563011.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.020 kcal (2) G-P(sol) polarization free energy of solvation -28.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds