Wall clock time and date at job start Mon Mar 30 2020 07:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47187 * 2 1 4 4 C 1.52997 * 109.47121 * 119.99928 * 2 1 3 5 5 C 1.50702 * 109.47384 * 294.99860 * 4 2 1 6 6 H 1.08010 * 119.99536 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00492 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99681 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00453 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46839 * 59.99744 * 9 7 5 11 11 H 1.48503 * 109.47467 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47075 * 299.99856 * 9 7 5 13 13 C 1.50698 * 109.47219 * 240.00183 * 2 1 3 14 14 C 1.38259 * 119.98451 * 119.99777 * 13 2 1 15 15 C 1.38203 * 120.04176 * 180.02562 * 14 13 2 16 16 C 1.38345 * 119.99944 * 0.02562 * 15 14 13 17 17 Cl 1.73596 * 120.02199 * 179.70285 * 16 15 14 18 18 C 1.38447 * 119.96072 * 359.97438 * 16 15 14 19 19 Cl 1.73606 * 120.02005 * 179.97438 * 18 16 15 20 20 C 1.38212 * 119.97867 * 300.01902 * 13 2 1 21 21 H 1.08994 * 109.46771 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46717 * 300.00090 * 1 2 3 23 23 H 1.09001 * 109.47093 * 59.99801 * 1 2 3 24 24 H 1.08995 * 109.47636 * 55.00214 * 4 2 1 25 25 H 1.09000 * 109.46931 * 175.00490 * 4 2 1 26 26 H 0.97000 * 119.99422 * 180.02562 * 8 7 5 27 27 H 1.08001 * 119.98388 * 359.97438 * 14 13 2 28 28 H 1.08000 * 120.00675 * 179.97438 * 15 14 13 29 29 H 1.07999 * 119.99776 * 359.97438 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 1 1.0800 0.9743 2.3757 7 6 1.9933 -0.4016 3.7282 8 7 2.6773 -1.5182 3.8511 9 14 1.4985 0.5628 5.2497 10 1 0.0185 0.6683 5.3092 11 1 1.9936 -0.1372 6.4622 12 1 2.0897 1.9236 5.1871 13 6 2.0324 -0.7104 -1.2305 14 6 2.8272 -0.0381 -2.1403 15 6 3.2881 -0.6882 -3.2694 16 6 2.9538 -2.0124 -3.4901 17 17 3.5260 -2.8274 -4.9120 18 6 2.1579 -2.6856 -2.5790 19 17 1.7369 -4.3472 -2.8547 20 6 1.6979 -2.0335 -1.4490 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.6055 -1.7197 1.2952 25 1 3.1263 -0.7993 1.2056 26 1 2.9246 -1.8410 4.7317 27 1 3.0874 0.9960 -1.9691 28 1 3.9086 -0.1624 -3.9800 29 1 1.0770 -2.5580 -0.7378 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107563011.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:05 Heat of formation + Delta-G solvation = -28.685815 kcal Electronic energy + Delta-G solvation = -14440.666491 eV Core-core repulsion = 11799.833947 eV Total energy + Delta-G solvation = -2640.832544 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.69281 -37.90075 -37.52199 -36.40925 -34.29057 -31.88161 -30.74192 -28.73377 -25.77625 -24.24759 -23.47580 -20.89568 -18.67181 -18.07684 -16.95954 -16.61879 -16.34926 -15.19115 -15.07943 -14.98836 -14.53570 -14.32555 -13.83224 -13.34214 -12.97474 -12.90227 -12.86025 -12.74519 -12.42614 -12.25761 -12.21176 -11.94912 -11.83326 -11.60516 -11.16732 -11.05364 -10.51172 -9.91039 -9.51765 -8.15481 -6.25232 -0.01273 0.14667 0.82851 1.19724 1.43033 1.44840 1.52371 2.42690 2.50620 3.18476 3.65774 3.79599 4.13277 4.23045 4.29626 4.48330 4.61171 4.68630 4.86577 4.96170 5.09527 5.16839 5.27982 5.43286 5.48690 5.55365 5.67749 5.82688 5.88512 6.27706 6.90928 7.43507 8.95906 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.034335 B = 0.004865 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.289102 B = 5754.285979 C = 6049.745278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.046 4.046 3 H 0.080 0.920 4 C 0.040 3.960 5 C -0.530 4.530 6 H 0.067 0.933 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.958 3.042 10 H -0.267 1.267 11 H -0.289 1.289 12 H -0.266 1.266 13 C -0.053 4.053 14 C -0.103 4.103 15 C -0.089 4.089 16 C -0.051 4.051 17 Cl -0.052 7.052 18 C -0.037 4.037 19 Cl -0.058 7.058 20 C -0.105 4.105 21 H 0.043 0.957 22 H 0.055 0.945 23 H 0.065 0.935 24 H -0.007 1.007 25 H -0.015 1.015 26 H 0.261 0.739 27 H 0.160 0.840 28 H 0.171 0.829 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.673 1.201 -15.909 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.065 4.065 3 H 0.099 0.901 4 C 0.003 3.997 5 C -0.568 4.568 6 H 0.085 0.915 7 C -0.198 4.198 8 N -0.575 5.575 9 Si 0.784 3.216 10 H -0.192 1.192 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.053 4.053 14 C -0.121 4.121 15 C -0.108 4.108 16 C -0.078 4.078 17 Cl -0.023 7.023 18 C -0.065 4.065 19 Cl -0.029 7.029 20 C -0.124 4.124 21 H 0.062 0.938 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.012 0.988 25 H 0.004 0.996 26 H 0.070 0.930 27 H 0.178 0.822 28 H 0.188 0.812 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.592 0.859 -15.944 15.978 hybrid contribution -0.055 -0.365 1.058 1.120 sum -0.647 0.494 -14.886 14.908 Atomic orbital electron populations 1.21680 0.93733 1.01317 1.01555 1.20233 0.96655 0.98845 0.90741 0.90141 1.18996 0.94194 0.94648 0.91837 1.21630 1.34580 1.08816 0.91799 0.91453 1.25924 0.95246 0.96009 1.02619 1.70107 1.40155 1.22971 1.24295 0.85596 0.78953 0.78849 0.78244 1.19179 1.21492 1.19095 1.20302 0.95712 0.93249 0.96059 1.21460 0.96284 1.01674 0.92699 1.21301 0.99687 0.91280 0.98513 1.20845 1.01538 0.94485 0.90959 1.98360 1.87592 1.79154 1.37168 1.20811 1.01662 0.87044 0.96950 1.98359 1.92233 1.16241 1.96067 1.20929 1.00927 0.94997 0.95583 0.93818 0.92552 0.91621 0.98842 0.99627 0.93026 0.82212 0.81198 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 8.82 71.98 0.63 -3.63 15 2 C -0.05 -1.73 2.51 -11.54 -0.03 -1.76 15 3 H 0.08 2.84 7.88 -2.38 -0.02 2.82 15 4 C 0.04 2.01 4.19 29.85 0.12 2.13 15 5 C -0.53 -28.50 8.41 25.60 0.22 -28.28 15 6 H 0.07 3.40 7.06 -2.91 -0.02 3.38 15 7 C 0.00 -0.03 5.46 84.65 0.46 0.44 15 8 N -0.93 -56.16 13.29 21.45 0.28 -55.88 15 9 Si 0.96 43.17 29.54 68.60 2.03 45.20 15 10 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 11 H -0.29 -13.00 7.11 99.48 0.71 -12.29 15 12 H -0.27 -11.44 7.11 99.48 0.71 -10.74 15 13 C -0.05 -1.72 4.78 -19.87 -0.09 -1.81 15 14 C -0.10 -2.68 9.67 22.27 0.22 -2.46 15 15 C -0.09 -2.07 9.83 22.29 0.22 -1.85 15 16 C -0.05 -1.35 6.32 22.35 0.14 -1.21 15 17 Cl -0.05 -1.21 27.96 -2.72 -0.08 -1.29 15 18 C -0.04 -1.12 6.32 22.34 0.14 -0.98 15 19 Cl -0.06 -1.65 27.96 -2.72 -0.08 -1.73 15 20 C -0.11 -3.52 8.54 22.29 0.19 -3.33 15 21 H 0.04 1.50 7.39 -2.39 -0.02 1.48 15 22 H 0.06 2.04 6.95 -2.38 -0.02 2.02 15 23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 15 24 H -0.01 -0.37 7.57 -2.39 -0.02 -0.39 15 25 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 15 26 H 0.26 14.90 8.31 -92.71 -0.77 14.13 15 27 H 0.16 3.33 7.94 -2.91 -0.02 3.31 15 28 H 0.17 2.79 8.06 -2.91 -0.02 2.76 15 29 H 0.13 4.55 7.16 -2.91 -0.02 4.53 15 Total: -1.00 -60.79 279.51 5.53 -55.25 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: 1.15 Total: 1.19 kcal Atomic # 6 Polarization: -44.97 SS G_CDS: 2.22 Total: -42.75 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.28 Total: -55.88 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 17 Polarization: -2.86 SS G_CDS: -0.15 Total: -3.02 kcal Total: -60.79 5.53 -55.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107563011.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.568 kcal (2) G-P(sol) polarization free energy of solvation -60.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds