Wall clock time and date at job start Mon Mar 30 2020 07:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47069 * 2 1 4 4 C 1.52997 * 109.47160 * 240.00067 * 2 1 3 5 5 C 1.50703 * 109.47164 * 64.99953 * 4 2 1 6 6 H 1.07997 * 119.99947 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99749 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99753 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47353 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47003 * 120.00447 * 9 7 5 12 12 H 1.48498 * 109.47323 * 240.00238 * 9 7 5 13 13 C 1.50701 * 109.47117 * 119.99831 * 2 1 3 14 14 C 1.38263 * 119.98383 * 60.02485 * 13 2 1 15 15 C 1.38193 * 120.04055 * 179.97438 * 14 13 2 16 16 C 1.38350 * 120.00521 * 359.97438 * 15 14 13 17 17 Cl 1.73593 * 120.02492 * 180.02562 * 16 15 14 18 18 C 1.38447 * 119.95287 * 359.74359 * 16 15 14 19 19 Cl 1.73604 * 120.01755 * 180.27484 * 18 16 15 20 20 C 1.38212 * 119.97973 * 240.00441 * 13 2 1 21 21 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47440 * 299.99837 * 1 2 3 23 23 H 1.08995 * 109.47233 * 60.00006 * 1 2 3 24 24 H 1.09001 * 109.46783 * 185.00061 * 4 2 1 25 25 H 1.08994 * 109.47083 * 304.99576 * 4 2 1 26 26 H 0.96995 * 119.99865 * 179.97438 * 8 7 5 27 27 H 1.08005 * 119.97372 * 359.95201 * 14 13 2 28 28 H 1.08010 * 119.99917 * 179.97438 * 15 14 13 29 29 H 1.08002 * 119.99812 * 359.97438 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9933 -0.4017 -3.7282 8 7 2.6764 -1.5187 -3.8510 9 14 1.4985 0.5627 -5.2496 10 1 0.7411 1.7737 -4.8434 11 1 2.7163 0.9682 -5.9963 12 1 0.6451 -0.2870 -6.1185 13 6 2.0323 -0.7104 1.2305 14 6 1.6985 -2.0342 1.4487 15 6 2.1590 -2.6870 2.5764 16 6 2.9549 -2.0160 3.4877 17 17 3.5341 -2.8356 4.9041 18 6 3.2939 -0.6920 3.2662 19 17 4.2984 0.1494 4.4049 20 6 2.8268 -0.0382 2.1400 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 3.1263 -0.7994 -1.2055 25 1 1.6054 -1.7197 -1.2951 26 1 2.9237 -1.8417 -4.7316 27 1 1.0772 -2.5584 0.7375 28 1 1.8974 -3.7210 2.7465 29 1 3.0878 0.9957 1.9685 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107563013.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:07 Heat of formation + Delta-G solvation = -15.924374 kcal Electronic energy + Delta-G solvation = -14398.983820 eV Core-core repulsion = 11758.704654 eV Total energy + Delta-G solvation = -2640.279167 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.48781 -36.73339 -36.43405 -34.86887 -32.36895 -30.80392 -29.28827 -26.96622 -24.09539 -22.87675 -22.19478 -19.40921 -17.15663 -16.43320 -15.63920 -15.29482 -14.53788 -14.03395 -13.91401 -13.60175 -13.09068 -12.58153 -12.29208 -11.83129 -11.75638 -11.71126 -11.33585 -11.05248 -10.96750 -10.90574 -10.81134 -10.49857 -10.42130 -9.95381 -9.49607 -9.11810 -8.77447 -8.42047 -8.27408 -6.06071 -4.08629 1.17137 1.29747 1.93225 2.30892 3.27164 3.35454 3.38388 3.68089 4.40733 4.76334 5.08483 5.29824 5.32864 5.41424 5.48936 5.77073 5.95534 6.04714 6.11650 6.21462 6.35792 6.51496 6.78353 6.83956 6.96132 6.99392 7.57923 7.68613 7.92017 8.32653 8.97230 9.55656 11.05035 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.035940 B = 0.004619 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.895802 B = 6061.092249 C = 6265.111937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.057 4.057 3 H 0.071 0.929 4 C 0.033 3.967 5 C -0.518 4.518 6 H 0.058 0.942 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.284 1.284 13 C -0.033 4.033 14 C -0.096 4.096 15 C -0.099 4.099 16 C -0.047 4.047 17 Cl -0.066 7.066 18 C -0.028 4.028 19 Cl -0.064 7.064 20 C -0.105 4.105 21 H 0.049 0.951 22 H 0.034 0.966 23 H 0.069 0.931 24 H 0.017 0.983 25 H 0.021 0.979 26 H 0.260 0.740 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.690 -0.380 14.667 14.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.075 4.075 3 H 0.089 0.911 4 C -0.004 4.004 5 C -0.557 4.557 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.034 4.034 14 C -0.114 4.114 15 C -0.117 4.117 16 C -0.075 4.075 17 Cl -0.038 7.038 18 C -0.055 4.055 19 Cl -0.035 7.035 20 C -0.124 4.124 21 H 0.068 0.932 22 H 0.054 0.946 23 H 0.088 0.912 24 H 0.036 0.964 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.158 0.842 28 H 0.155 0.845 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.469 -0.491 14.771 14.787 hybrid contribution 0.059 0.393 -0.696 0.801 sum -0.409 -0.098 14.075 14.082 Atomic orbital electron populations 1.21735 0.94732 1.01385 1.00844 1.20473 0.95735 0.99172 0.92122 0.91106 1.19174 0.96419 0.95448 0.89364 1.21231 1.35097 1.08523 0.90813 0.92342 1.25009 0.95159 0.95062 0.99142 1.69970 1.38701 1.21106 1.23480 0.86563 0.78310 0.80104 0.83196 1.19708 1.21042 1.21036 1.20468 0.93592 0.93977 0.95347 1.21205 0.99498 0.94434 0.96259 1.21007 0.97042 1.00295 0.93392 1.20643 1.02894 0.91886 0.92064 1.98352 1.87814 1.78633 1.38966 1.20720 0.99113 0.91647 0.94045 1.98359 1.67640 1.77559 1.59948 1.21028 0.98420 1.00807 0.92143 0.93205 0.94641 0.91180 0.96421 0.96114 0.92997 0.84179 0.84457 0.84308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.82 37.16 0.33 -1.88 15 2 C -0.06 -1.06 2.51 -91.77 -0.23 -1.29 15 3 H 0.07 1.32 7.87 -51.93 -0.41 0.91 15 4 C 0.03 0.79 4.19 -27.88 -0.12 0.67 15 5 C -0.52 -13.72 8.41 -34.44 -0.29 -14.01 15 6 H 0.06 1.50 7.06 -52.49 -0.37 1.13 15 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 8 N -0.89 -25.94 13.29 55.43 0.74 -25.20 15 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 15 10 H -0.27 -6.25 7.11 56.52 0.40 -5.84 15 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 15 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 13 C -0.03 -0.55 4.78 -104.62 -0.50 -1.05 15 14 C -0.10 -1.47 8.76 -39.59 -0.35 -1.82 15 15 C -0.10 -1.36 9.83 -39.56 -0.39 -1.75 15 16 C -0.05 -0.68 6.32 -39.46 -0.25 -0.93 15 17 Cl -0.07 -0.85 27.96 -51.86 -1.45 -2.30 15 18 C -0.03 -0.41 6.32 -39.47 -0.25 -0.66 15 19 Cl -0.06 -0.86 27.96 -51.86 -1.45 -2.31 15 20 C -0.11 -1.62 9.45 -39.55 -0.37 -1.99 15 21 H 0.05 0.82 7.39 -51.93 -0.38 0.43 15 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 15 23 H 0.07 1.28 6.95 -51.93 -0.36 0.92 15 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 25 H 0.02 0.52 7.57 -51.93 -0.39 0.12 15 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 27 H 0.14 2.10 7.16 -52.48 -0.38 1.72 15 28 H 0.14 1.56 8.06 -52.48 -0.42 1.14 15 29 H 0.14 1.95 7.94 -52.49 -0.42 1.54 15 LS Contribution 279.51 15.07 4.21 4.21 Total: -1.00 -27.82 279.51 -8.60 -36.42 By element: Atomic # 1 Polarization: -0.39 SS G_CDS: -3.11 Total: -3.50 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -2.52 Total: -23.23 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: 0.74 Total: -25.20 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -2.90 Total: -4.61 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.82 -8.60 -36.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107563013.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.495 kcal (2) G-P(sol) polarization free energy of solvation -27.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds