Wall clock time and date at job start Mon Mar 30 2020 07:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47069 * 2 1 4 4 C 1.52997 * 109.47160 * 240.00067 * 2 1 3 5 5 C 1.50703 * 109.47164 * 64.99953 * 4 2 1 6 6 H 1.07997 * 119.99947 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99749 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99753 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47353 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47003 * 120.00447 * 9 7 5 12 12 H 1.48498 * 109.47323 * 240.00238 * 9 7 5 13 13 C 1.50701 * 109.47117 * 119.99831 * 2 1 3 14 14 C 1.38263 * 119.98383 * 60.02485 * 13 2 1 15 15 C 1.38193 * 120.04055 * 179.97438 * 14 13 2 16 16 C 1.38350 * 120.00521 * 359.97438 * 15 14 13 17 17 Cl 1.73593 * 120.02492 * 180.02562 * 16 15 14 18 18 C 1.38447 * 119.95287 * 359.74359 * 16 15 14 19 19 Cl 1.73604 * 120.01755 * 180.27484 * 18 16 15 20 20 C 1.38212 * 119.97973 * 240.00441 * 13 2 1 21 21 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47440 * 299.99837 * 1 2 3 23 23 H 1.08995 * 109.47233 * 60.00006 * 1 2 3 24 24 H 1.09001 * 109.46783 * 185.00061 * 4 2 1 25 25 H 1.08994 * 109.47083 * 304.99576 * 4 2 1 26 26 H 0.96995 * 119.99865 * 179.97438 * 8 7 5 27 27 H 1.08005 * 119.97372 * 359.95201 * 14 13 2 28 28 H 1.08010 * 119.99917 * 179.97438 * 15 14 13 29 29 H 1.08002 * 119.99812 * 359.97438 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9933 -0.4017 -3.7282 8 7 2.6764 -1.5187 -3.8510 9 14 1.4985 0.5627 -5.2496 10 1 0.7411 1.7737 -4.8434 11 1 2.7163 0.9682 -5.9963 12 1 0.6451 -0.2870 -6.1185 13 6 2.0323 -0.7104 1.2305 14 6 1.6985 -2.0342 1.4487 15 6 2.1590 -2.6870 2.5764 16 6 2.9549 -2.0160 3.4877 17 17 3.5341 -2.8356 4.9041 18 6 3.2939 -0.6920 3.2662 19 17 4.2984 0.1494 4.4049 20 6 2.8268 -0.0382 2.1400 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 3.1263 -0.7994 -1.2055 25 1 1.6054 -1.7197 -1.2951 26 1 2.9237 -1.8417 -4.7316 27 1 1.0772 -2.5584 0.7375 28 1 1.8974 -3.7210 2.7465 29 1 3.0878 0.9957 1.9685 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107563013.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:07 Heat of formation + Delta-G solvation = -28.541465 kcal Electronic energy + Delta-G solvation = -14399.530939 eV Core-core repulsion = 11758.704654 eV Total energy + Delta-G solvation = -2640.826285 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.69986 -37.92224 -37.52514 -36.38495 -34.28344 -31.97181 -30.68448 -28.72330 -25.76828 -24.12687 -23.64873 -20.87315 -18.65252 -18.08842 -16.95872 -16.61830 -16.32087 -15.36171 -15.11055 -14.84400 -14.59451 -14.33311 -13.80336 -13.28780 -12.97835 -12.89052 -12.88109 -12.78020 -12.42492 -12.23774 -12.21057 -11.94780 -11.82337 -11.60692 -11.17263 -11.03236 -10.51998 -9.92974 -9.51558 -8.15794 -6.24735 -0.02114 0.13630 0.81969 1.18168 1.41645 1.43478 1.54968 2.42553 2.49639 3.18548 3.63801 3.81374 4.14062 4.18199 4.27777 4.49190 4.61107 4.73986 4.78241 4.98551 5.07956 5.14687 5.29636 5.46727 5.48224 5.57253 5.65012 5.82989 5.89174 6.28586 6.91360 7.43826 8.95909 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.035940 B = 0.004619 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.895802 B = 6061.092249 C = 6265.111937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.047 4.047 3 H 0.070 0.930 4 C 0.041 3.959 5 C -0.528 4.528 6 H 0.065 0.935 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.957 3.043 10 H -0.260 1.260 11 H -0.284 1.284 12 H -0.281 1.281 13 C -0.050 4.050 14 C -0.103 4.103 15 C -0.092 4.092 16 C -0.050 4.050 17 Cl -0.051 7.051 18 C -0.034 4.034 19 Cl -0.052 7.052 20 C -0.107 4.107 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.054 0.946 24 H -0.016 1.016 25 H 0.002 0.998 26 H 0.261 0.739 27 H 0.139 0.861 28 H 0.163 0.837 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.229 0.084 15.606 15.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.066 4.066 3 H 0.088 0.912 4 C 0.004 3.996 5 C -0.566 4.566 6 H 0.083 0.917 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.782 3.218 10 H -0.184 1.184 11 H -0.210 1.210 12 H -0.207 1.207 13 C -0.051 4.051 14 C -0.121 4.121 15 C -0.111 4.111 16 C -0.077 4.077 17 Cl -0.022 7.022 18 C -0.062 4.062 19 Cl -0.023 7.023 20 C -0.126 4.126 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.002 0.998 25 H 0.020 0.980 26 H 0.070 0.930 27 H 0.157 0.843 28 H 0.181 0.819 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.016 -0.015 15.727 15.759 hybrid contribution 0.277 0.213 -0.885 0.951 sum -0.739 0.199 14.842 14.861 Atomic orbital electron populations 1.21669 0.93326 1.01774 1.01390 1.20223 0.96917 0.98546 0.90866 0.91171 1.19002 0.94160 0.94956 0.91516 1.21674 1.34401 1.08719 0.91845 0.91693 1.25886 0.95284 0.96021 1.02503 1.70100 1.40230 1.22879 1.24181 0.85514 0.77953 0.79024 0.79269 1.18407 1.20965 1.20685 1.20269 0.95089 0.94627 0.95114 1.21270 0.99781 0.94138 0.96928 1.21227 0.96127 1.01306 0.92391 1.20809 1.02481 0.91898 0.92557 1.98360 1.87587 1.78258 1.38020 1.20792 0.99237 0.92014 0.94142 1.98362 1.67219 1.77364 1.59351 1.21085 0.98022 1.01315 0.92172 0.92939 0.91934 0.92662 0.99772 0.97980 0.93004 0.84294 0.81930 0.83429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.13 8.82 71.98 0.63 -3.49 15 2 C -0.05 -1.76 2.51 -11.54 -0.03 -1.79 15 3 H 0.07 2.60 7.87 -2.39 -0.02 2.58 15 4 C 0.04 2.00 4.19 29.85 0.12 2.12 15 5 C -0.53 -28.24 8.41 25.60 0.22 -28.02 15 6 H 0.06 3.31 7.06 -2.91 -0.02 3.29 15 7 C 0.00 0.03 5.46 84.65 0.46 0.50 15 8 N -0.93 -55.28 13.29 21.45 0.28 -55.00 15 9 Si 0.96 43.03 29.54 68.60 2.03 45.05 15 10 H -0.26 -11.07 7.11 99.48 0.71 -10.36 15 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 13 C -0.05 -1.65 4.78 -19.86 -0.09 -1.74 15 14 C -0.10 -3.09 8.76 22.27 0.20 -2.89 15 15 C -0.09 -2.37 9.83 22.29 0.22 -2.16 15 16 C -0.05 -1.33 6.32 22.35 0.14 -1.19 15 17 Cl -0.05 -1.20 27.96 -2.72 -0.08 -1.28 15 18 C -0.03 -0.96 6.32 22.34 0.14 -0.82 15 19 Cl -0.05 -1.30 27.96 -2.72 -0.08 -1.38 15 20 C -0.11 -3.18 9.45 22.29 0.21 -2.97 15 21 H 0.05 1.68 7.39 -2.39 -0.02 1.67 15 22 H 0.06 1.73 8.14 -2.39 -0.02 1.71 15 23 H 0.05 1.97 6.95 -2.39 -0.02 1.96 15 24 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 15 25 H 0.00 0.10 7.57 -2.39 -0.02 0.08 15 26 H 0.26 14.63 8.31 -92.71 -0.77 13.85 15 27 H 0.14 4.14 7.16 -2.91 -0.02 4.12 15 28 H 0.16 3.30 8.06 -2.91 -0.02 3.27 15 29 H 0.15 4.00 7.94 -2.91 -0.02 3.98 15 Total: -1.00 -59.00 279.51 5.53 -53.47 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: 1.15 Total: 1.59 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 2.22 Total: -42.46 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.28 Total: -55.00 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 17 Polarization: -2.51 SS G_CDS: -0.15 Total: -2.66 kcal Total: -59.00 5.53 -53.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107563013.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.925 kcal (2) G-P(sol) polarization free energy of solvation -58.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds