Wall clock time and date at job start Mon Mar 30 2020 07:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47297 * 2 1 4 4 C 1.53004 * 109.47243 * 119.99754 * 2 1 3 5 5 C 1.50701 * 109.47211 * 295.00691 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 C 1.50696 * 109.47613 * 240.00082 * 2 1 3 14 14 C 1.38225 * 119.99700 * 299.72668 * 13 2 1 15 15 C 1.38337 * 119.99661 * 179.80916 * 14 13 2 16 16 Cl 1.73600 * 119.99838 * 180.20817 * 15 14 13 17 17 C 1.38380 * 120.00013 * 0.46542 * 15 14 13 18 18 C 1.38177 * 119.99957 * 359.76267 * 17 15 14 19 19 C 1.38337 * 120.00130 * 119.99598 * 13 2 1 20 20 Cl 1.73596 * 119.99974 * 359.97438 * 19 13 2 21 21 H 1.09003 * 109.47367 * 300.00045 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99991 * 1 2 3 23 23 H 1.09000 * 109.46966 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47211 * 174.99718 * 4 2 1 25 25 H 1.09007 * 109.46376 * 55.00260 * 4 2 1 26 26 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 27 27 H 1.07996 * 120.00015 * 0.02562 * 14 13 2 28 28 H 1.07997 * 120.00108 * 179.74668 * 17 15 14 29 29 H 1.08005 * 119.99749 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0804 0.9745 2.3757 7 6 1.9976 -0.3990 3.7280 8 7 2.6807 -1.5161 3.8509 9 14 1.5100 0.5697 5.2489 10 1 0.1844 0.1032 5.7291 11 1 2.5234 0.3619 6.3142 12 1 1.4343 2.0141 4.9126 13 6 2.0324 -0.7103 -1.2304 14 6 1.7031 -2.0354 -1.4463 15 6 2.1611 -2.6863 -2.5777 16 17 1.7432 -4.3488 -2.8516 17 6 2.9567 -2.0138 -3.4886 18 6 3.2897 -0.6906 -3.2703 19 6 2.8276 -0.0380 -2.1410 20 17 3.2463 1.6242 -1.8666 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1263 -0.7995 1.2056 25 1 1.6053 -1.7198 1.2951 26 1 2.9317 -1.8367 4.7312 27 1 1.0855 -2.5613 -0.7334 28 1 3.3176 -2.5231 -4.3698 29 1 3.9110 -0.1658 -3.9810 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107564253.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:09 Heat of formation + Delta-G solvation = -13.722647 kcal Electronic energy + Delta-G solvation = -14615.153381 eV Core-core repulsion = 11974.969688 eV Total energy + Delta-G solvation = -2640.183693 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.49830 -36.66106 -36.06255 -35.10059 -32.39284 -30.40298 -29.51240 -26.92386 -24.16303 -22.85714 -22.04555 -19.39375 -17.11532 -16.32780 -15.64998 -15.44820 -14.52705 -13.88902 -13.78272 -13.51577 -13.02762 -12.48649 -12.23502 -12.15459 -11.87190 -11.65750 -11.21490 -10.92385 -10.90578 -10.88502 -10.76105 -10.40030 -10.32038 -9.78831 -9.49844 -9.06897 -8.66934 -8.36230 -8.28466 -6.00918 -4.03120 1.12446 1.36558 2.13361 2.40559 3.31382 3.38205 3.41098 3.64664 4.44822 4.83638 4.88181 5.25357 5.35092 5.40177 5.61132 5.82837 5.99721 6.09120 6.13318 6.25758 6.33090 6.44285 6.75280 6.86408 6.98496 7.02461 7.63043 7.74213 7.97119 8.38269 9.02161 9.60655 11.10296 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.020125 B = 0.006499 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.943458 B = 4307.210581 C = 5247.180543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.064 4.064 3 H 0.082 0.918 4 C 0.036 3.964 5 C -0.516 4.516 6 H 0.058 0.942 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C -0.030 4.030 14 C -0.092 4.092 15 C -0.029 4.029 16 Cl -0.074 7.074 17 C -0.119 4.119 18 C -0.101 4.101 19 C -0.037 4.037 20 Cl -0.063 7.063 21 H 0.070 0.930 22 H 0.034 0.966 23 H 0.048 0.952 24 H 0.017 0.983 25 H 0.019 0.981 26 H 0.260 0.740 27 H 0.144 0.856 28 H 0.136 0.864 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.598 -0.178 -14.687 14.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.083 4.083 3 H 0.100 0.900 4 C -0.001 4.001 5 C -0.554 4.554 6 H 0.076 0.924 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.031 4.031 14 C -0.110 4.110 15 C -0.056 4.056 16 Cl -0.045 7.045 17 C -0.138 4.138 18 C -0.120 4.120 19 C -0.064 4.064 20 Cl -0.033 7.033 21 H 0.089 0.911 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.035 0.965 25 H 0.037 0.963 26 H 0.070 0.930 27 H 0.162 0.838 28 H 0.153 0.847 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.517 -0.292 -14.553 14.565 hybrid contribution -0.098 0.363 0.902 0.978 sum -0.614 0.072 -13.650 13.664 Atomic orbital electron populations 1.21721 0.94695 1.01291 1.00864 1.20607 0.95840 1.00041 0.91780 0.89956 1.19145 0.96353 0.95309 0.89319 1.21178 1.34986 1.08496 0.90777 0.92406 1.24992 0.95163 0.95067 0.99059 1.69961 1.38648 1.21202 1.23516 0.86631 0.78217 0.80479 0.82915 1.20684 1.21277 1.19855 1.20224 0.93970 0.93153 0.95753 1.20981 1.00381 0.93751 0.95923 1.20979 1.01183 0.86051 0.97372 1.98358 1.92484 1.17458 1.96193 1.20822 0.99244 0.94035 0.99657 1.20891 1.00420 0.94071 0.96611 1.20949 1.01586 0.86822 0.97059 1.98352 1.92121 1.16750 1.96127 0.91096 0.94685 0.93302 0.96470 0.96254 0.92991 0.83843 0.84650 0.84551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.82 37.15 0.33 -2.01 15 2 C -0.06 -1.29 2.41 -91.78 -0.22 -1.51 15 3 H 0.08 1.68 6.17 -51.92 -0.32 1.36 15 4 C 0.04 0.89 4.18 -27.88 -0.12 0.77 15 5 C -0.52 -14.05 8.41 -34.44 -0.29 -14.34 15 6 H 0.06 1.53 7.06 -52.49 -0.37 1.15 15 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 8 N -0.89 -26.47 13.29 55.43 0.74 -25.73 15 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 15 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 13 C -0.03 -0.53 4.78 -104.59 -0.50 -1.03 15 14 C -0.09 -1.52 8.54 -39.55 -0.34 -1.86 15 15 C -0.03 -0.42 6.32 -39.49 -0.25 -0.67 15 16 Cl -0.07 -0.97 28.96 -51.86 -1.50 -2.48 15 17 C -0.12 -1.51 9.83 -39.55 -0.39 -1.90 15 18 C -0.10 -1.33 9.83 -39.55 -0.39 -1.72 15 19 C -0.04 -0.59 6.31 -39.49 -0.25 -0.84 15 20 Cl -0.06 -0.96 27.00 -51.86 -1.40 -2.36 15 21 H 0.07 1.36 6.95 -51.93 -0.36 1.00 15 22 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 23 H 0.05 0.85 7.40 -51.93 -0.38 0.47 15 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 25 H 0.02 0.50 7.56 -51.93 -0.39 0.11 15 26 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 27 H 0.14 2.43 7.16 -52.49 -0.38 2.06 15 28 H 0.14 1.35 8.06 -52.49 -0.42 0.93 15 29 H 0.14 1.42 8.06 -52.48 -0.42 1.00 15 LS Contribution 278.00 15.07 4.19 4.19 Total: -1.00 -28.59 278.00 -8.54 -37.13 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: -3.03 Total: -3.54 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: -2.51 Total: -23.56 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.74 Total: -25.73 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -2.90 Total: -4.84 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.59 -8.54 -37.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107564253.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.409 kcal (2) G-P(sol) polarization free energy of solvation -28.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds