Wall clock time and date at job start Mon Mar 30 2020 07:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47297 * 2 1 4 4 C 1.53004 * 109.47243 * 119.99754 * 2 1 3 5 5 C 1.50701 * 109.47211 * 295.00691 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 C 1.50696 * 109.47613 * 240.00082 * 2 1 3 14 14 C 1.38225 * 119.99700 * 299.72668 * 13 2 1 15 15 C 1.38337 * 119.99661 * 179.80916 * 14 13 2 16 16 Cl 1.73600 * 119.99838 * 180.20817 * 15 14 13 17 17 C 1.38380 * 120.00013 * 0.46542 * 15 14 13 18 18 C 1.38177 * 119.99957 * 359.76267 * 17 15 14 19 19 C 1.38337 * 120.00130 * 119.99598 * 13 2 1 20 20 Cl 1.73596 * 119.99974 * 359.97438 * 19 13 2 21 21 H 1.09003 * 109.47367 * 300.00045 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99991 * 1 2 3 23 23 H 1.09000 * 109.46966 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47211 * 174.99718 * 4 2 1 25 25 H 1.09007 * 109.46376 * 55.00260 * 4 2 1 26 26 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 27 27 H 1.07996 * 120.00015 * 0.02562 * 14 13 2 28 28 H 1.07997 * 120.00108 * 179.74668 * 17 15 14 29 29 H 1.08005 * 119.99749 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0804 0.9745 2.3757 7 6 1.9976 -0.3990 3.7280 8 7 2.6807 -1.5161 3.8509 9 14 1.5100 0.5697 5.2489 10 1 0.1844 0.1032 5.7291 11 1 2.5234 0.3619 6.3142 12 1 1.4343 2.0141 4.9126 13 6 2.0324 -0.7103 -1.2304 14 6 1.7031 -2.0354 -1.4463 15 6 2.1611 -2.6863 -2.5777 16 17 1.7432 -4.3488 -2.8516 17 6 2.9567 -2.0138 -3.4886 18 6 3.2897 -0.6906 -3.2703 19 6 2.8276 -0.0380 -2.1410 20 17 3.2463 1.6242 -1.8666 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1263 -0.7995 1.2056 25 1 1.6053 -1.7198 1.2951 26 1 2.9317 -1.8367 4.7312 27 1 1.0855 -2.5613 -0.7334 28 1 3.3176 -2.5231 -4.3698 29 1 3.9110 -0.1658 -3.9810 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107564253.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:09 Heat of formation + Delta-G solvation = -27.491884 kcal Electronic energy + Delta-G solvation = -14615.750460 eV Core-core repulsion = 11974.969688 eV Total energy + Delta-G solvation = -2640.780772 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.72537 -37.81563 -37.29220 -36.63389 -34.37739 -31.58350 -30.92573 -28.77854 -25.84605 -24.28449 -23.39717 -20.91716 -18.70544 -17.95073 -17.01693 -16.71403 -16.40295 -15.11672 -15.08878 -14.94291 -14.61345 -14.21946 -13.68724 -13.36987 -13.30379 -13.06811 -12.85772 -12.76716 -12.52246 -12.24862 -12.05247 -11.98052 -11.75663 -11.48663 -11.20587 -11.00216 -10.52449 -9.90798 -9.50631 -8.16568 -6.26011 -0.05319 0.19911 0.99507 1.22765 1.41341 1.41890 1.52718 2.41572 2.47745 3.17313 3.66707 3.72842 4.08323 4.21898 4.35870 4.45820 4.57506 4.67143 4.92918 4.96565 5.08395 5.12441 5.24224 5.32342 5.41970 5.52504 5.61888 5.77524 5.86577 6.27044 6.88899 7.42387 8.95242 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.020125 B = 0.006499 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.943458 B = 4307.210581 C = 5247.180543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.055 4.055 3 H 0.077 0.923 4 C 0.046 3.954 5 C -0.529 4.529 6 H 0.064 0.936 7 C 0.002 3.998 8 N -0.934 5.934 9 Si 0.958 3.042 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.263 1.263 13 C -0.055 4.055 14 C -0.107 4.107 15 C -0.034 4.034 16 Cl -0.062 7.062 17 C -0.103 4.103 18 C -0.090 4.090 19 C -0.047 4.047 20 Cl -0.063 7.063 21 H 0.056 0.944 22 H 0.060 0.940 23 H 0.048 0.952 24 H -0.018 1.018 25 H -0.004 1.004 26 H 0.262 0.738 27 H 0.128 0.872 28 H 0.172 0.828 29 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.622 0.399 -16.248 16.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.073 4.073 3 H 0.095 0.905 4 C 0.009 3.991 5 C -0.567 4.567 6 H 0.082 0.918 7 C -0.195 4.195 8 N -0.574 5.574 9 Si 0.783 3.217 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.187 1.187 13 C -0.056 4.056 14 C -0.126 4.126 15 C -0.061 4.061 16 Cl -0.034 7.034 17 C -0.122 4.122 18 C -0.109 4.109 19 C -0.074 4.074 20 Cl -0.034 7.034 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.000 1.000 25 H 0.015 0.985 26 H 0.070 0.930 27 H 0.146 0.854 28 H 0.190 0.810 29 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.553 0.294 -16.125 16.137 hybrid contribution -0.061 0.121 1.300 1.307 sum -0.613 0.415 -14.825 14.843 Atomic orbital electron populations 1.21651 0.93492 1.01490 1.01393 1.20325 0.96905 0.99221 0.90889 0.90453 1.18939 0.93946 0.94624 0.91593 1.21602 1.34531 1.08722 0.91824 0.91830 1.25886 0.95146 0.96024 1.02473 1.70099 1.40067 1.22974 1.24276 0.85555 0.77997 0.79383 0.78793 1.19810 1.21123 1.18750 1.19975 0.96069 0.93777 0.95740 1.20892 1.01166 0.93665 0.96834 1.21083 1.01245 0.86695 0.97031 1.98362 1.92446 1.16511 1.96033 1.21252 0.97304 0.93747 0.99850 1.21279 0.99572 0.94159 0.95857 1.21108 1.01561 0.86987 0.97741 1.98349 1.92069 1.16779 1.96221 0.92477 0.92076 0.93300 0.99951 0.98534 0.92955 0.85375 0.81042 0.81146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.49 8.82 71.98 0.63 -3.86 15 2 C -0.05 -2.24 2.41 -11.54 -0.03 -2.27 15 3 H 0.08 3.19 6.17 -2.38 -0.01 3.17 15 4 C 0.05 2.39 4.18 29.85 0.12 2.52 15 5 C -0.53 -29.44 8.41 25.60 0.22 -29.22 15 6 H 0.06 3.39 7.06 -2.91 -0.02 3.37 15 7 C 0.00 0.13 5.46 84.65 0.46 0.59 15 8 N -0.93 -56.78 13.29 21.45 0.28 -56.49 15 9 Si 0.96 44.16 29.54 68.60 2.03 46.18 15 10 H -0.27 -12.14 7.11 99.48 0.71 -11.44 15 11 H -0.29 -13.01 7.11 99.48 0.71 -12.31 15 12 H -0.26 -11.60 7.11 99.48 0.71 -10.89 15 13 C -0.05 -1.92 4.78 -19.85 -0.09 -2.02 15 14 C -0.11 -3.55 8.54 22.29 0.19 -3.36 15 15 C -0.03 -0.93 6.32 22.33 0.14 -0.78 15 16 Cl -0.06 -1.55 28.96 -2.72 -0.08 -1.63 15 17 C -0.10 -2.28 9.83 22.29 0.22 -2.06 15 18 C -0.09 -2.08 9.83 22.29 0.22 -1.86 15 19 C -0.05 -1.43 6.31 22.33 0.14 -1.29 15 20 Cl -0.06 -1.87 27.00 -2.72 -0.07 -1.94 15 21 H 0.06 2.20 6.95 -2.39 -0.02 2.18 15 22 H 0.06 1.89 8.14 -2.38 -0.02 1.87 15 23 H 0.05 1.74 7.40 -2.39 -0.02 1.73 15 24 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 15 25 H 0.00 -0.20 7.56 -2.38 -0.02 -0.22 15 26 H 0.26 15.03 8.31 -92.71 -0.77 14.26 15 27 H 0.13 4.55 7.16 -2.91 -0.02 4.53 15 28 H 0.17 2.58 8.06 -2.91 -0.02 2.56 15 29 H 0.17 2.78 8.06 -2.91 -0.02 2.75 15 Total: -1.00 -62.55 278.00 5.54 -57.01 By element: Atomic # 1 Polarization: -0.66 SS G_CDS: 1.16 Total: 0.49 kcal Atomic # 6 Polarization: -45.84 SS G_CDS: 2.22 Total: -43.62 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.28 Total: -56.49 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 17 Polarization: -3.42 SS G_CDS: -0.15 Total: -3.58 kcal Total: -62.55 5.54 -57.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107564253.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.517 kcal (2) G-P(sol) polarization free energy of solvation -62.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds