Wall clock time and date at job start Mon Mar 30 2020 07:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47347 * 2 1 4 4 C 1.52999 * 109.46941 * 239.99410 * 2 1 3 5 5 C 1.50697 * 109.46941 * 65.00451 * 4 2 1 6 6 H 1.08010 * 120.00180 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00162 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00117 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99962 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47145 * 89.99992 * 9 7 5 11 11 H 1.48501 * 109.47216 * 210.00317 * 9 7 5 12 12 H 1.48504 * 109.46978 * 330.00404 * 9 7 5 13 13 C 1.50703 * 109.46612 * 119.99971 * 2 1 3 14 14 C 1.38220 * 120.00401 * 60.00129 * 13 2 1 15 15 C 1.38328 * 119.99992 * 180.29674 * 14 13 2 16 16 Cl 1.73599 * 120.00042 * 179.71625 * 15 14 13 17 17 C 1.38378 * 120.00279 * 359.48817 * 15 14 13 18 18 C 1.38184 * 119.99510 * 0.46402 * 17 15 14 19 19 C 1.38335 * 119.99466 * 240.01555 * 13 2 1 20 20 Cl 1.73598 * 120.00410 * 359.96118 * 19 13 2 21 21 H 1.08994 * 109.47805 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47071 * 300.00443 * 1 2 3 23 23 H 1.08998 * 109.47288 * 60.00107 * 1 2 3 24 24 H 1.09000 * 109.47111 * 185.00336 * 4 2 1 25 25 H 1.09001 * 109.47078 * 305.00591 * 4 2 1 26 26 H 0.97003 * 119.99957 * 180.02562 * 8 7 5 27 27 H 1.08002 * 119.99600 * 0.02562 * 14 13 2 28 28 H 1.07999 * 120.00266 * 180.25492 * 17 15 14 29 29 H 1.08002 * 119.99549 * 179.78829 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0800 0.9741 -2.3757 7 6 1.9923 -0.4025 -3.7283 8 7 1.6449 0.2770 -4.7994 9 14 2.9625 -1.9892 -3.9027 10 1 2.0232 -3.1336 -4.0188 11 1 3.8107 -1.9195 -5.1197 12 1 3.8250 -2.1759 -2.7083 13 6 2.0322 -0.7104 1.2305 14 6 1.6983 -2.0337 1.4493 15 6 2.1543 -2.6840 2.5819 16 17 1.7288 -4.3438 2.8604 17 6 2.9534 -2.0128 3.4906 18 6 3.2881 -0.6901 3.2714 19 6 2.8272 -0.0380 2.1413 20 17 3.2472 1.6238 1.8662 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 3.1263 -0.7997 -1.2055 25 1 1.6052 -1.7199 -1.2950 26 1 1.8915 -0.0464 -5.6800 27 1 1.0778 -2.5587 0.7381 28 1 3.3128 -2.5217 4.3728 29 1 3.9090 -0.1653 3.9823 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107564258.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:10 Heat of formation + Delta-G solvation = -10.005653 kcal Electronic energy + Delta-G solvation = -14678.401021 eV Core-core repulsion = 12038.378509 eV Total energy + Delta-G solvation = -2640.022512 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.62162 -36.76899 -36.15642 -35.23586 -32.37283 -30.52092 -29.75103 -27.46655 -24.15060 -22.82992 -21.93907 -19.37702 -17.36071 -16.60862 -15.87148 -15.53201 -14.30157 -14.01277 -13.94031 -13.50271 -13.26019 -12.72886 -12.36581 -12.21530 -11.98026 -11.89949 -11.31801 -11.10657 -11.00139 -10.97490 -10.82786 -10.49447 -9.87717 -9.81200 -9.76356 -9.14344 -8.81014 -8.54569 -8.40995 -6.05336 -4.03192 1.01018 1.24494 2.02591 2.31349 3.29833 3.38025 3.42027 3.52736 4.44346 4.72565 4.76391 5.13321 5.28205 5.28605 5.49374 5.71904 5.88277 5.98607 6.01883 6.14921 6.22609 6.33459 6.63798 6.70123 6.81650 6.96409 7.20159 7.35181 7.75607 8.51364 8.99047 9.56997 11.07725 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.017594 B = 0.007566 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.100812 B = 3699.700804 C = 4690.022580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.054 4.054 3 H 0.088 0.912 4 C -0.002 4.002 5 C -0.515 4.515 6 H 0.076 0.924 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.873 3.127 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.265 1.265 13 C -0.035 4.035 14 C -0.095 4.095 15 C -0.030 4.030 16 Cl -0.073 7.073 17 C -0.117 4.117 18 C -0.100 4.100 19 C -0.036 4.036 20 Cl -0.059 7.059 21 H 0.047 0.953 22 H 0.037 0.963 23 H 0.075 0.925 24 H 0.017 0.983 25 H 0.014 0.986 26 H 0.263 0.737 27 H 0.143 0.857 28 H 0.137 0.863 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.815 -4.229 17.195 17.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.073 4.073 3 H 0.106 0.894 4 C -0.039 4.039 5 C -0.553 4.553 6 H 0.094 0.906 7 C -0.132 4.132 8 N -0.541 5.541 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.190 1.190 13 C -0.036 4.036 14 C -0.114 4.114 15 C -0.056 4.056 16 Cl -0.044 7.044 17 C -0.136 4.136 18 C -0.119 4.119 19 C -0.063 4.063 20 Cl -0.030 7.030 21 H 0.066 0.934 22 H 0.056 0.944 23 H 0.094 0.906 24 H 0.035 0.965 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.161 0.839 28 H 0.155 0.845 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.827 -4.225 16.995 17.607 hybrid contribution 0.593 -0.915 -0.239 1.116 sum 2.419 -5.140 16.756 17.693 Atomic orbital electron populations 1.21735 0.94215 1.01364 1.01419 1.20399 0.96192 1.00060 0.90607 0.89380 1.19630 0.96168 0.95630 0.92454 1.21061 1.35678 1.09711 0.88866 0.90615 1.24974 0.95478 0.96843 0.95908 1.69903 1.46959 1.39182 0.98036 0.86880 0.80821 0.84424 0.77847 1.20236 1.21350 1.18979 1.20241 0.94131 0.93156 0.96034 1.20975 1.00478 0.93845 0.96125 1.20979 1.01120 0.86189 0.97353 1.98362 1.92296 1.17631 1.96121 1.20849 0.99060 0.94055 0.99625 1.20922 1.00340 0.94039 0.96557 1.20966 1.01360 0.87018 0.96973 1.98365 1.92028 1.16490 1.96073 0.93357 0.94417 0.90561 0.96488 0.96820 0.92734 0.83905 0.84548 0.84413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.82 37.16 0.33 -2.00 15 2 C -0.05 -1.04 2.41 -91.77 -0.22 -1.27 15 3 H 0.09 1.75 6.16 -51.93 -0.32 1.43 15 4 C 0.00 -0.04 3.26 -27.88 -0.09 -0.13 15 5 C -0.52 -14.16 8.96 -34.44 -0.31 -14.47 15 6 H 0.08 2.22 7.30 -52.48 -0.38 1.84 15 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 15 8 N -0.90 -27.40 13.96 55.43 0.77 -26.62 15 9 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 15 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 12 H -0.27 -6.37 6.54 56.52 0.37 -6.00 15 13 C -0.03 -0.58 4.78 -104.59 -0.50 -1.08 15 14 C -0.10 -1.48 8.54 -39.55 -0.34 -1.82 15 15 C -0.03 -0.40 6.32 -39.50 -0.25 -0.65 15 16 Cl -0.07 -0.90 28.96 -51.86 -1.50 -2.40 15 17 C -0.12 -1.39 9.83 -39.55 -0.39 -1.78 15 18 C -0.10 -1.23 9.83 -39.55 -0.39 -1.62 15 19 C -0.04 -0.55 6.31 -39.49 -0.25 -0.79 15 20 Cl -0.06 -0.87 27.00 -51.86 -1.40 -2.27 15 21 H 0.05 0.81 7.39 -51.93 -0.38 0.43 15 22 H 0.04 0.59 8.14 -51.93 -0.42 0.16 15 23 H 0.08 1.50 6.95 -51.93 -0.36 1.14 15 24 H 0.02 0.41 7.20 -51.93 -0.37 0.03 15 25 H 0.01 0.31 7.00 -51.93 -0.36 -0.05 15 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 27 H 0.14 2.21 7.16 -52.49 -0.38 1.83 15 28 H 0.14 1.26 8.06 -52.49 -0.42 0.83 15 29 H 0.14 1.33 8.06 -52.49 -0.42 0.91 15 LS Contribution 274.40 15.07 4.14 4.14 Total: -1.00 -29.04 274.40 -8.16 -37.20 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -3.00 Total: -3.24 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -2.51 Total: -23.70 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: 0.77 Total: -26.62 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -2.90 Total: -4.67 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.04 -8.16 -37.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107564258.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.197 kcal (2) G-P(sol) polarization free energy of solvation -29.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds