Wall clock time and date at job start Mon Mar 30 2020 07:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47347 * 2 1 4 4 C 1.52999 * 109.46941 * 239.99410 * 2 1 3 5 5 C 1.50697 * 109.46941 * 65.00451 * 4 2 1 6 6 H 1.08010 * 120.00180 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00162 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00117 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99962 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47145 * 89.99992 * 9 7 5 11 11 H 1.48501 * 109.47216 * 210.00317 * 9 7 5 12 12 H 1.48504 * 109.46978 * 330.00404 * 9 7 5 13 13 C 1.50703 * 109.46612 * 119.99971 * 2 1 3 14 14 C 1.38220 * 120.00401 * 60.00129 * 13 2 1 15 15 C 1.38328 * 119.99992 * 180.29674 * 14 13 2 16 16 Cl 1.73599 * 120.00042 * 179.71625 * 15 14 13 17 17 C 1.38378 * 120.00279 * 359.48817 * 15 14 13 18 18 C 1.38184 * 119.99510 * 0.46402 * 17 15 14 19 19 C 1.38335 * 119.99466 * 240.01555 * 13 2 1 20 20 Cl 1.73598 * 120.00410 * 359.96118 * 19 13 2 21 21 H 1.08994 * 109.47805 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47071 * 300.00443 * 1 2 3 23 23 H 1.08998 * 109.47288 * 60.00107 * 1 2 3 24 24 H 1.09000 * 109.47111 * 185.00336 * 4 2 1 25 25 H 1.09001 * 109.47078 * 305.00591 * 4 2 1 26 26 H 0.97003 * 119.99957 * 180.02562 * 8 7 5 27 27 H 1.08002 * 119.99600 * 0.02562 * 14 13 2 28 28 H 1.07999 * 120.00266 * 180.25492 * 17 15 14 29 29 H 1.08002 * 119.99549 * 179.78829 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0800 0.9741 -2.3757 7 6 1.9923 -0.4025 -3.7283 8 7 1.6449 0.2770 -4.7994 9 14 2.9625 -1.9892 -3.9027 10 1 2.0232 -3.1336 -4.0188 11 1 3.8107 -1.9195 -5.1197 12 1 3.8250 -2.1759 -2.7083 13 6 2.0322 -0.7104 1.2305 14 6 1.6983 -2.0337 1.4493 15 6 2.1543 -2.6840 2.5819 16 17 1.7288 -4.3438 2.8604 17 6 2.9534 -2.0128 3.4906 18 6 3.2881 -0.6901 3.2714 19 6 2.8272 -0.0380 2.1413 20 17 3.2472 1.6238 1.8662 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 3.1263 -0.7997 -1.2055 25 1 1.6052 -1.7199 -1.2950 26 1 1.8915 -0.0464 -5.6800 27 1 1.0778 -2.5587 0.7381 28 1 3.3128 -2.5217 4.3728 29 1 3.9090 -0.1653 3.9823 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107564258.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:10 Heat of formation + Delta-G solvation = -24.803707 kcal Electronic energy + Delta-G solvation = -14679.042712 eV Core-core repulsion = 12038.378509 eV Total energy + Delta-G solvation = -2640.664204 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.75989 -37.83032 -37.31582 -36.67481 -34.40536 -31.61467 -31.13524 -29.21324 -25.68287 -24.13418 -23.31027 -20.86970 -19.11984 -18.02332 -17.09530 -16.66220 -16.24233 -15.33052 -15.14742 -14.79297 -14.77006 -14.51130 -13.76321 -13.40569 -13.37629 -13.08741 -12.92397 -12.85105 -12.55697 -12.10255 -12.03960 -11.86991 -11.69292 -11.48186 -11.39173 -11.06674 -10.73532 -9.93931 -9.52877 -8.26357 -6.28465 -0.06990 0.17562 0.98893 1.22266 1.34195 1.36608 1.47435 2.36452 2.44537 3.09001 3.61661 3.70722 4.05916 4.19322 4.32127 4.41142 4.49110 4.63564 4.90818 4.93344 4.99007 5.08782 5.12814 5.24977 5.33092 5.43590 5.57368 5.65722 5.70191 6.31909 6.78143 7.35005 8.90023 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.017594 B = 0.007566 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.100812 B = 3699.700804 C = 4690.022580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.049 4.049 3 H 0.075 0.925 4 C 0.004 3.996 5 C -0.516 4.516 6 H 0.041 0.959 7 C 0.009 3.991 8 N -0.950 5.950 9 Si 0.937 3.063 10 H -0.265 1.265 11 H -0.285 1.285 12 H -0.252 1.252 13 C -0.056 4.056 14 C -0.106 4.106 15 C -0.033 4.033 16 Cl -0.061 7.061 17 C -0.101 4.101 18 C -0.090 4.090 19 C -0.046 4.046 20 Cl -0.065 7.065 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.010 0.990 25 H 0.020 0.980 26 H 0.265 0.735 27 H 0.137 0.863 28 H 0.171 0.829 29 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.933 -6.079 19.744 20.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.067 4.067 3 H 0.093 0.907 4 C -0.033 4.033 5 C -0.554 4.554 6 H 0.059 0.941 7 C -0.188 4.188 8 N -0.591 5.591 9 Si 0.761 3.239 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.176 1.176 13 C -0.057 4.057 14 C -0.125 4.125 15 C -0.060 4.060 16 Cl -0.032 7.032 17 C -0.120 4.120 18 C -0.108 4.108 19 C -0.073 4.073 20 Cl -0.036 7.036 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.028 0.972 25 H 0.039 0.961 26 H 0.074 0.926 27 H 0.155 0.845 28 H 0.189 0.811 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.939 -6.077 19.565 20.697 hybrid contribution 0.211 -0.307 -0.949 1.019 sum 3.150 -6.384 18.616 19.931 Atomic orbital electron populations 1.21658 0.93654 1.01829 1.01064 1.20150 0.96780 0.99248 0.90548 0.90655 1.19517 0.95639 0.95644 0.92503 1.21370 1.34441 1.08805 0.90819 0.94104 1.25860 0.96793 1.00521 0.95584 1.70052 1.48936 1.41394 0.98683 0.85850 0.79623 0.80225 0.78184 1.19004 1.21123 1.17559 1.19910 0.96210 0.93843 0.95741 1.20935 1.01027 0.93502 0.97071 1.21072 1.01083 0.86828 0.97004 1.98370 1.92239 1.16645 1.95970 1.21263 0.97197 0.93680 0.99843 1.21273 0.99585 0.94187 0.95765 1.21127 1.01536 0.86890 0.97764 1.98364 1.92037 1.17041 1.96186 0.92452 0.92162 0.93425 0.97187 0.96144 0.92640 0.84549 0.81123 0.81309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.50 8.82 71.98 0.63 -3.87 15 2 C -0.05 -1.89 2.41 -11.54 -0.03 -1.91 15 3 H 0.08 3.06 6.16 -2.39 -0.01 3.05 15 4 C 0.00 0.20 3.26 29.85 0.10 0.30 15 5 C -0.52 -29.24 8.96 25.60 0.23 -29.01 15 6 H 0.04 2.53 7.30 -2.91 -0.02 2.51 15 7 C 0.01 0.53 5.47 84.65 0.46 1.00 15 8 N -0.95 -59.42 13.96 21.45 0.30 -59.12 15 9 Si 0.94 44.52 27.47 68.60 1.88 46.40 15 10 H -0.27 -12.03 7.11 99.48 0.71 -11.33 15 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 15 12 H -0.25 -11.32 6.54 99.48 0.65 -10.67 15 13 C -0.06 -1.79 4.78 -19.84 -0.09 -1.89 15 14 C -0.11 -3.10 8.54 22.29 0.19 -2.90 15 15 C -0.03 -0.79 6.32 22.32 0.14 -0.65 15 16 Cl -0.06 -1.32 28.96 -2.72 -0.08 -1.40 15 17 C -0.10 -1.96 9.83 22.29 0.22 -1.74 15 18 C -0.09 -1.86 9.83 22.29 0.22 -1.64 15 19 C -0.05 -1.29 6.31 22.33 0.14 -1.15 15 20 Cl -0.07 -1.87 27.00 -2.72 -0.07 -1.94 15 21 H 0.06 1.92 7.39 -2.39 -0.02 1.90 15 22 H 0.06 1.86 8.14 -2.39 -0.02 1.84 15 23 H 0.05 1.95 6.95 -2.39 -0.02 1.93 15 24 H 0.01 0.47 7.20 -2.39 -0.02 0.45 15 25 H 0.02 0.92 7.00 -2.39 -0.02 0.90 15 26 H 0.26 15.53 8.31 -92.71 -0.77 14.76 15 27 H 0.14 4.04 7.16 -2.91 -0.02 4.02 15 28 H 0.17 2.17 8.06 -2.91 -0.02 2.15 15 29 H 0.17 2.46 8.06 -2.91 -0.02 2.43 15 Total: -1.00 -63.62 274.40 5.35 -58.27 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: 1.10 Total: 1.27 kcal Atomic # 6 Polarization: -45.70 SS G_CDS: 2.21 Total: -43.48 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.30 Total: -59.12 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Atomic # 17 Polarization: -3.19 SS G_CDS: -0.15 Total: -3.34 kcal Total: -63.62 5.35 -58.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107564258.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.470 kcal (2) G-P(sol) polarization free energy of solvation -63.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds