Wall clock time and date at job start Mon Mar 30 2020 07:02:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08994 * 109.47347 * 2 1
4 4 C 1.52999 * 109.46941 * 239.99410 * 2 1 3
5 5 C 1.50697 * 109.46941 * 65.00451 * 4 2 1
6 6 H 1.08010 * 120.00180 * 359.97438 * 5 4 2
7 7 C 1.37877 * 120.00162 * 180.02562 * 5 4 2
8 8 N 1.31515 * 120.00117 * 180.02562 * 7 5 4
9 9 Si 1.86799 * 119.99962 * 359.97438 * 7 5 4
10 10 H 1.48505 * 109.47145 * 89.99992 * 9 7 5
11 11 H 1.48501 * 109.47216 * 210.00317 * 9 7 5
12 12 H 1.48504 * 109.46978 * 330.00404 * 9 7 5
13 13 C 1.50703 * 109.46612 * 119.99971 * 2 1 3
14 14 C 1.38220 * 120.00401 * 60.00129 * 13 2 1
15 15 C 1.38328 * 119.99992 * 180.29674 * 14 13 2
16 16 Cl 1.73599 * 120.00042 * 179.71625 * 15 14 13
17 17 C 1.38378 * 120.00279 * 359.48817 * 15 14 13
18 18 C 1.38184 * 119.99510 * 0.46402 * 17 15 14
19 19 C 1.38335 * 119.99466 * 240.01555 * 13 2 1
20 20 Cl 1.73598 * 120.00410 * 359.96118 * 19 13 2
21 21 H 1.08994 * 109.47805 * 180.02562 * 1 2 3
22 22 H 1.09000 * 109.47071 * 300.00443 * 1 2 3
23 23 H 1.08998 * 109.47288 * 60.00107 * 1 2 3
24 24 H 1.09000 * 109.47111 * 185.00336 * 4 2 1
25 25 H 1.09001 * 109.47078 * 305.00591 * 4 2 1
26 26 H 0.97003 * 119.99957 * 180.02562 * 8 7 5
27 27 H 1.08002 * 119.99600 * 0.02562 * 14 13 2
28 28 H 1.07999 * 120.00266 * 180.25492 * 17 15 14
29 29 H 1.08002 * 119.99549 * 179.78829 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7214 -1.2492
5 6 1.6414 0.0569 -2.4765
6 1 1.0800 0.9741 -2.3757
7 6 1.9923 -0.4025 -3.7283
8 7 1.6449 0.2770 -4.7994
9 14 2.9625 -1.9892 -3.9027
10 1 2.0232 -3.1336 -4.0188
11 1 3.8107 -1.9195 -5.1197
12 1 3.8250 -2.1759 -2.7083
13 6 2.0322 -0.7104 1.2305
14 6 1.6983 -2.0337 1.4493
15 6 2.1543 -2.6840 2.5819
16 17 1.7288 -4.3438 2.8604
17 6 2.9534 -2.0128 3.4906
18 6 3.2881 -0.6901 3.2714
19 6 2.8272 -0.0380 2.1413
20 17 3.2472 1.6238 1.8662
21 1 -0.3634 -1.0276 0.0005
22 1 -0.3633 0.5139 0.8899
23 1 -0.3634 0.5138 -0.8900
24 1 3.1263 -0.7997 -1.2055
25 1 1.6052 -1.7199 -1.2950
26 1 1.8915 -0.0464 -5.6800
27 1 1.0778 -2.5587 0.7381
28 1 3.3128 -2.5217 4.3728
29 1 3.9090 -0.1653 3.9823
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000107564258.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:02:10
Heat of formation + Delta-G solvation = -24.803707 kcal
Electronic energy + Delta-G solvation = -14679.042712 eV
Core-core repulsion = 12038.378509 eV
Total energy + Delta-G solvation = -2640.664204 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 258.027 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.75989 -37.83032 -37.31582 -36.67481 -34.40536 -31.61467 -31.13524 -29.21324
-25.68287 -24.13418 -23.31027 -20.86970 -19.11984 -18.02332 -17.09530 -16.66220
-16.24233 -15.33052 -15.14742 -14.79297 -14.77006 -14.51130 -13.76321 -13.40569
-13.37629 -13.08741 -12.92397 -12.85105 -12.55697 -12.10255 -12.03960 -11.86991
-11.69292 -11.48186 -11.39173 -11.06674 -10.73532 -9.93931 -9.52877 -8.26357
-6.28465 -0.06990 0.17562 0.98893 1.22266 1.34195 1.36608 1.47435
2.36452 2.44537 3.09001 3.61661 3.70722 4.05916 4.19322 4.32127
4.41142 4.49110 4.63564 4.90818 4.93344 4.99007 5.08782 5.12814
5.24977 5.33092 5.43590 5.57368 5.65722 5.70191 6.31909 6.78143
7.35005 8.90023
Molecular weight = 258.03amu
Principal moments of inertia in cm(-1)
A = 0.017594 B = 0.007566 C = 0.005969
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1591.100812 B = 3699.700804 C = 4690.022580
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.049 4.049
3 H 0.075 0.925
4 C 0.004 3.996
5 C -0.516 4.516
6 H 0.041 0.959
7 C 0.009 3.991
8 N -0.950 5.950
9 Si 0.937 3.063
10 H -0.265 1.265
11 H -0.285 1.285
12 H -0.252 1.252
13 C -0.056 4.056
14 C -0.106 4.106
15 C -0.033 4.033
16 Cl -0.061 7.061
17 C -0.101 4.101
18 C -0.090 4.090
19 C -0.046 4.046
20 Cl -0.065 7.065
21 H 0.056 0.944
22 H 0.059 0.941
23 H 0.047 0.953
24 H 0.010 0.990
25 H 0.020 0.980
26 H 0.265 0.735
27 H 0.137 0.863
28 H 0.171 0.829
29 H 0.169 0.831
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.933 -6.079 19.744 20.866
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C -0.067 4.067
3 H 0.093 0.907
4 C -0.033 4.033
5 C -0.554 4.554
6 H 0.059 0.941
7 C -0.188 4.188
8 N -0.591 5.591
9 Si 0.761 3.239
10 H -0.190 1.190
11 H -0.211 1.211
12 H -0.176 1.176
13 C -0.057 4.057
14 C -0.125 4.125
15 C -0.060 4.060
16 Cl -0.032 7.032
17 C -0.120 4.120
18 C -0.108 4.108
19 C -0.073 4.073
20 Cl -0.036 7.036
21 H 0.075 0.925
22 H 0.078 0.922
23 H 0.066 0.934
24 H 0.028 0.972
25 H 0.039 0.961
26 H 0.074 0.926
27 H 0.155 0.845
28 H 0.189 0.811
29 H 0.187 0.813
Dipole moment (debyes) X Y Z Total
from point charges 2.939 -6.077 19.565 20.697
hybrid contribution 0.211 -0.307 -0.949 1.019
sum 3.150 -6.384 18.616 19.931
Atomic orbital electron populations
1.21658 0.93654 1.01829 1.01064 1.20150 0.96780 0.99248 0.90548
0.90655 1.19517 0.95639 0.95644 0.92503 1.21370 1.34441 1.08805
0.90819 0.94104 1.25860 0.96793 1.00521 0.95584 1.70052 1.48936
1.41394 0.98683 0.85850 0.79623 0.80225 0.78184 1.19004 1.21123
1.17559 1.19910 0.96210 0.93843 0.95741 1.20935 1.01027 0.93502
0.97071 1.21072 1.01083 0.86828 0.97004 1.98370 1.92239 1.16645
1.95970 1.21263 0.97197 0.93680 0.99843 1.21273 0.99585 0.94187
0.95765 1.21127 1.01536 0.86890 0.97764 1.98364 1.92037 1.17041
1.96186 0.92452 0.92162 0.93425 0.97187 0.96144 0.92640 0.84549
0.81123 0.81309
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.50 8.82 71.98 0.63 -3.87 15
2 C -0.05 -1.89 2.41 -11.54 -0.03 -1.91 15
3 H 0.08 3.06 6.16 -2.39 -0.01 3.05 15
4 C 0.00 0.20 3.26 29.85 0.10 0.30 15
5 C -0.52 -29.24 8.96 25.60 0.23 -29.01 15
6 H 0.04 2.53 7.30 -2.91 -0.02 2.51 15
7 C 0.01 0.53 5.47 84.65 0.46 1.00 15
8 N -0.95 -59.42 13.96 21.45 0.30 -59.12 15
9 Si 0.94 44.52 27.47 68.60 1.88 46.40 15
10 H -0.27 -12.03 7.11 99.48 0.71 -11.33 15
11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 15
12 H -0.25 -11.32 6.54 99.48 0.65 -10.67 15
13 C -0.06 -1.79 4.78 -19.84 -0.09 -1.89 15
14 C -0.11 -3.10 8.54 22.29 0.19 -2.90 15
15 C -0.03 -0.79 6.32 22.32 0.14 -0.65 15
16 Cl -0.06 -1.32 28.96 -2.72 -0.08 -1.40 15
17 C -0.10 -1.96 9.83 22.29 0.22 -1.74 15
18 C -0.09 -1.86 9.83 22.29 0.22 -1.64 15
19 C -0.05 -1.29 6.31 22.33 0.14 -1.15 15
20 Cl -0.07 -1.87 27.00 -2.72 -0.07 -1.94 15
21 H 0.06 1.92 7.39 -2.39 -0.02 1.90 15
22 H 0.06 1.86 8.14 -2.39 -0.02 1.84 15
23 H 0.05 1.95 6.95 -2.39 -0.02 1.93 15
24 H 0.01 0.47 7.20 -2.39 -0.02 0.45 15
25 H 0.02 0.92 7.00 -2.39 -0.02 0.90 15
26 H 0.26 15.53 8.31 -92.71 -0.77 14.76 15
27 H 0.14 4.04 7.16 -2.91 -0.02 4.02 15
28 H 0.17 2.17 8.06 -2.91 -0.02 2.15 15
29 H 0.17 2.46 8.06 -2.91 -0.02 2.43 15
Total: -1.00 -63.62 274.40 5.35 -58.27
By element:
Atomic # 1 Polarization: 0.17 SS G_CDS: 1.10 Total: 1.27 kcal
Atomic # 6 Polarization: -45.70 SS G_CDS: 2.21 Total: -43.48 kcal
Atomic # 7 Polarization: -59.42 SS G_CDS: 0.30 Total: -59.12 kcal
Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal
Atomic # 17 Polarization: -3.19 SS G_CDS: -0.15 Total: -3.34 kcal
Total: -63.62 5.35 -58.27 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000107564258.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.470 kcal
(2) G-P(sol) polarization free energy of solvation -63.621 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.150 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.346 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.274 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.804 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds