Wall clock time and date at job start Mon Mar 30 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81401 * 109.46798 * 2 1 4 4 C 1.81408 * 102.99909 * 180.02562 * 3 2 1 5 5 H 1.08991 * 109.62833 * 55.39470 * 4 3 2 6 6 C 1.54311 * 109.62979 * 294.99773 * 4 3 2 7 7 C 1.45884 * 112.18258 * 161.55951 * 6 4 3 8 8 C 1.54312 * 112.18454 * 61.12842 * 7 6 4 9 9 C 1.50446 * 108.48628 * 281.46062 * 8 7 6 10 10 N 1.47995 * 112.83330 * 93.73525 * 9 8 7 11 11 C 1.46898 * 111.00196 * 84.82936 * 10 9 8 12 12 H 1.09006 * 109.47190 * 186.05152 * 11 10 9 13 13 C 1.53000 * 109.47140 * 306.04811 * 11 10 9 14 14 C 1.50700 * 109.47070 * 66.05007 * 11 10 9 15 15 H 1.07999 * 119.99676 * 359.97438 * 14 11 10 16 16 C 1.37875 * 120.00091 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00203 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99787 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47385 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46827 * 120.00462 * 18 16 14 21 21 H 1.48502 * 109.47087 * 240.00355 * 18 16 14 22 22 C 1.48006 * 114.62670 * 318.08872 * 10 9 8 23 23 H 1.09002 * 109.47043 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47126 * 299.99750 * 1 2 3 25 25 H 1.08996 * 109.47449 * 60.00035 * 1 2 3 26 26 H 1.08999 * 109.47276 * 239.99870 * 2 1 3 27 27 H 1.09005 * 109.47304 * 119.99803 * 2 1 3 28 28 H 1.09004 * 108.93637 * 40.86579 * 6 4 3 29 29 H 1.08995 * 108.86774 * 282.20918 * 6 4 3 30 30 H 1.08995 * 108.94287 * 300.42603 * 7 6 4 31 31 H 1.09005 * 108.86110 * 181.77160 * 7 6 4 32 32 H 1.09002 * 109.63502 * 161.76373 * 8 7 6 33 33 H 1.08999 * 109.63884 * 41.16043 * 8 7 6 34 34 H 1.09005 * 108.81019 * 214.59831 * 9 8 7 35 35 H 1.09007 * 108.81239 * 332.86746 * 9 8 7 36 36 H 1.09006 * 109.46801 * 60.00103 * 13 11 10 37 37 H 1.09000 * 109.47265 * 179.97438 * 13 11 10 38 38 H 1.08991 * 109.47613 * 300.00101 * 13 11 10 39 39 H 0.96995 * 120.00629 * 179.97438 * 17 16 14 40 40 H 1.09001 * 108.81119 * 197.22811 * 22 10 9 41 41 H 1.08999 * 108.72925 * 78.88970 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1345 1.7103 0.0000 4 6 3.9371 1.5059 -0.0008 5 1 4.2348 0.8855 -0.8460 6 6 4.3835 0.8370 1.3162 7 6 5.7188 0.2583 1.2150 8 6 6.7922 1.3213 0.9002 9 6 6.7298 1.6419 -0.5684 10 7 5.8698 2.8091 -0.8654 11 6 6.6166 4.0652 -0.7155 12 1 5.9365 4.9087 -0.8339 13 6 7.2552 4.1162 0.6740 14 6 7.6942 4.1373 -1.7665 15 1 7.8126 3.3305 -2.4747 16 6 8.5289 5.2332 -1.8241 17 7 8.3850 6.2154 -0.9614 18 14 9.8650 5.3222 -3.1265 19 1 9.8182 4.0996 -3.9681 20 1 9.6463 6.5183 -3.9791 21 1 11.1925 5.4198 -2.4679 22 6 4.6024 2.8515 -0.1021 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.6747 0.0489 1.5707 29 1 4.3810 1.5844 2.1096 30 1 5.7205 -0.4913 0.4238 31 1 5.9660 -0.2249 2.1603 32 1 7.7789 0.9301 1.1480 33 1 6.5962 2.2229 1.4805 34 1 7.7385 1.8485 -0.9262 35 1 6.3411 0.7742 -1.1014 36 1 7.9353 3.2726 0.7924 37 1 7.8097 5.0479 0.7850 38 1 6.4759 4.0640 1.4341 39 1 8.9724 6.9862 -1.0016 40 1 3.9196 3.5451 -0.5928 41 1 4.8113 3.2169 0.9033 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112088999.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:42 Heat of formation + Delta-G solvation = -4.190638 kcal Electronic energy + Delta-G solvation = -18255.557352 eV Core-core repulsion = 15682.339486 eV Total energy + Delta-G solvation = -2573.217866 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.08737 -34.96236 -32.89792 -32.29275 -31.81691 -28.78335 -26.02447 -25.32900 -24.44930 -23.30692 -20.67103 -20.28164 -18.84519 -16.39816 -16.30695 -15.49110 -15.15013 -14.87298 -14.76329 -14.02208 -13.85478 -13.51782 -13.00260 -12.84793 -12.49262 -12.21214 -12.08134 -11.64053 -11.55781 -11.43990 -11.25637 -10.94751 -10.87095 -10.68601 -10.57923 -10.43236 -10.29828 -9.97889 -9.76826 -9.63141 -9.45603 -8.88485 -8.33151 -7.53853 -7.04196 -5.98647 -4.02041 1.77021 2.70713 3.31363 3.39450 3.44020 4.42734 4.70192 4.77931 4.87058 4.90002 5.05125 5.24168 5.32438 5.35130 5.49968 5.55426 5.58488 5.66450 5.74787 5.89688 5.93254 6.02335 6.10037 6.22429 6.33720 6.38000 6.41628 6.47475 6.64192 6.82078 6.87843 6.93828 7.17144 7.48595 7.74804 7.88270 8.20038 8.40928 8.62176 9.04505 9.62858 11.08325 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.033492 B = 0.005181 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.818402 B = 5403.105158 C = 5702.377214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 S -0.260 6.260 4 C -0.044 4.044 5 H 0.096 0.904 6 C -0.108 4.108 7 C -0.116 4.116 8 C -0.158 4.158 9 C 0.066 3.934 10 N -0.537 5.537 11 C 0.215 3.785 12 H 0.037 0.963 13 C -0.172 4.172 14 C -0.495 4.495 15 H 0.063 0.937 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.286 1.286 22 C 0.080 3.920 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.037 0.963 37 H 0.085 0.915 38 H 0.007 0.993 39 H 0.259 0.741 40 H 0.070 0.930 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.728 -12.292 4.693 16.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.240 4.240 3 S -0.033 6.033 4 C -0.173 4.173 5 H 0.114 0.886 6 C -0.147 4.147 7 C -0.155 4.155 8 C -0.197 4.197 9 C -0.063 4.063 10 N -0.262 5.262 11 C 0.108 3.892 12 H 0.054 0.946 13 C -0.231 4.231 14 C -0.534 4.534 15 H 0.081 0.919 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.212 1.212 22 C -0.048 4.048 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.104 0.896 38 H 0.026 0.974 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.413 -11.219 4.243 15.884 hybrid contribution 1.707 -0.919 0.251 1.955 sum -8.706 -12.138 4.494 15.599 Atomic orbital electron populations 1.21496 0.92563 1.02126 1.03132 1.23294 0.99811 0.96335 1.04595 1.86865 1.06642 1.11847 1.97900 1.22990 0.91377 1.02017 1.00867 0.88610 1.20872 0.97135 1.00121 0.96622 1.20603 0.95076 0.98650 1.01176 1.22347 0.97787 0.99359 1.00172 1.21729 0.98925 0.92925 0.92681 1.62163 1.04069 1.04671 1.55254 1.19276 0.92079 0.85322 0.92491 0.94560 1.22587 0.99167 1.03414 0.97974 1.21141 1.13932 1.04307 1.14031 0.91890 1.24924 0.97693 0.95639 0.96064 1.69896 1.39058 1.08429 1.36021 0.86485 0.81507 0.78016 0.81656 1.19750 1.21098 1.21245 1.21413 0.92670 0.93213 0.97545 0.91504 0.91826 0.91707 0.90355 0.90402 0.92665 0.91366 0.92520 0.92608 0.92154 0.90012 0.89920 0.93388 0.94392 0.89620 0.97436 0.93110 0.91136 0.94583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 9.92 37.15 0.37 -0.83 16 2 C -0.09 -0.98 6.36 37.15 0.24 -0.74 16 3 S -0.26 -3.71 20.86 -107.50 -2.24 -5.95 16 4 C -0.04 -0.67 2.34 -27.32 -0.06 -0.73 16 5 H 0.10 1.53 7.08 -51.93 -0.37 1.16 16 6 C -0.11 -1.46 4.69 -29.41 -0.14 -1.59 16 7 C -0.12 -1.55 5.30 -29.41 -0.16 -1.71 16 8 C -0.16 -2.57 4.26 -27.32 -0.12 -2.68 16 9 C 0.07 1.23 4.48 -4.50 -0.02 1.21 16 10 N -0.54 -11.39 4.64 -229.30 -1.06 -12.46 16 11 C 0.21 5.34 2.28 -68.87 -0.16 5.19 16 12 H 0.04 1.01 8.02 -51.93 -0.42 0.60 16 13 C -0.17 -4.08 7.26 37.16 0.27 -3.81 16 14 C -0.50 -13.42 7.63 -34.44 -0.26 -13.68 16 15 H 0.06 1.72 7.38 -52.49 -0.39 1.33 16 16 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 17 N -0.89 -25.39 11.32 55.43 0.63 -24.76 16 18 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.08 1.50 4.46 -4.49 -0.02 1.48 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.81 8.14 -51.92 -0.42 0.38 16 27 H 0.08 0.77 6.82 -51.92 -0.35 0.41 16 28 H 0.05 0.65 6.36 -51.93 -0.33 0.32 16 29 H 0.07 0.97 7.51 -51.93 -0.39 0.58 16 30 H 0.06 0.73 7.52 -51.93 -0.39 0.34 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.47 4.11 -51.93 -0.21 1.26 16 34 H 0.08 1.74 6.40 -51.93 -0.33 1.41 16 35 H 0.05 0.84 6.59 -51.93 -0.34 0.50 16 36 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 37 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 38 H 0.01 0.15 5.90 -51.93 -0.31 -0.16 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.07 1.40 7.66 -51.93 -0.40 1.00 16 41 H 0.04 0.70 5.05 -51.93 -0.26 0.43 16 LS Contribution 307.22 15.07 4.63 4.63 Total: -1.00 -27.56 307.22 -9.99 -37.55 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.77 Total: 1.13 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -0.15 Total: -16.41 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: -0.44 Total: -37.22 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -2.24 Total: -5.95 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.56 -9.99 -37.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112088999.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.362 kcal (2) G-P(sol) polarization free energy of solvation -27.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds