Wall clock time and date at job start Mon Mar 30 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81401 * 109.46798 * 2 1 4 4 C 1.81408 * 102.99909 * 180.02562 * 3 2 1 5 5 H 1.08991 * 109.62833 * 55.39470 * 4 3 2 6 6 C 1.54311 * 109.62979 * 294.99773 * 4 3 2 7 7 C 1.45884 * 112.18258 * 161.55951 * 6 4 3 8 8 C 1.54312 * 112.18454 * 61.12842 * 7 6 4 9 9 C 1.50446 * 108.48628 * 281.46062 * 8 7 6 10 10 N 1.47995 * 112.83330 * 93.73525 * 9 8 7 11 11 C 1.46898 * 111.00196 * 84.82936 * 10 9 8 12 12 H 1.09006 * 109.47190 * 186.05152 * 11 10 9 13 13 C 1.53000 * 109.47140 * 306.04811 * 11 10 9 14 14 C 1.50700 * 109.47070 * 66.05007 * 11 10 9 15 15 H 1.07999 * 119.99676 * 359.97438 * 14 11 10 16 16 C 1.37875 * 120.00091 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00203 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99787 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47385 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46827 * 120.00462 * 18 16 14 21 21 H 1.48502 * 109.47087 * 240.00355 * 18 16 14 22 22 C 1.48006 * 114.62670 * 318.08872 * 10 9 8 23 23 H 1.09002 * 109.47043 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47126 * 299.99750 * 1 2 3 25 25 H 1.08996 * 109.47449 * 60.00035 * 1 2 3 26 26 H 1.08999 * 109.47276 * 239.99870 * 2 1 3 27 27 H 1.09005 * 109.47304 * 119.99803 * 2 1 3 28 28 H 1.09004 * 108.93637 * 40.86579 * 6 4 3 29 29 H 1.08995 * 108.86774 * 282.20918 * 6 4 3 30 30 H 1.08995 * 108.94287 * 300.42603 * 7 6 4 31 31 H 1.09005 * 108.86110 * 181.77160 * 7 6 4 32 32 H 1.09002 * 109.63502 * 161.76373 * 8 7 6 33 33 H 1.08999 * 109.63884 * 41.16043 * 8 7 6 34 34 H 1.09005 * 108.81019 * 214.59831 * 9 8 7 35 35 H 1.09007 * 108.81239 * 332.86746 * 9 8 7 36 36 H 1.09006 * 109.46801 * 60.00103 * 13 11 10 37 37 H 1.09000 * 109.47265 * 179.97438 * 13 11 10 38 38 H 1.08991 * 109.47613 * 300.00101 * 13 11 10 39 39 H 0.96995 * 120.00629 * 179.97438 * 17 16 14 40 40 H 1.09001 * 108.81119 * 197.22811 * 22 10 9 41 41 H 1.08999 * 108.72925 * 78.88970 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1345 1.7103 0.0000 4 6 3.9371 1.5059 -0.0008 5 1 4.2348 0.8855 -0.8460 6 6 4.3835 0.8370 1.3162 7 6 5.7188 0.2583 1.2150 8 6 6.7922 1.3213 0.9002 9 6 6.7298 1.6419 -0.5684 10 7 5.8698 2.8091 -0.8654 11 6 6.6166 4.0652 -0.7155 12 1 5.9365 4.9087 -0.8339 13 6 7.2552 4.1162 0.6740 14 6 7.6942 4.1373 -1.7665 15 1 7.8126 3.3305 -2.4747 16 6 8.5289 5.2332 -1.8241 17 7 8.3850 6.2154 -0.9614 18 14 9.8650 5.3222 -3.1265 19 1 9.8182 4.0996 -3.9681 20 1 9.6463 6.5183 -3.9791 21 1 11.1925 5.4198 -2.4679 22 6 4.6024 2.8515 -0.1021 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.6747 0.0489 1.5707 29 1 4.3810 1.5844 2.1096 30 1 5.7205 -0.4913 0.4238 31 1 5.9660 -0.2249 2.1603 32 1 7.7789 0.9301 1.1480 33 1 6.5962 2.2229 1.4805 34 1 7.7385 1.8485 -0.9262 35 1 6.3411 0.7742 -1.1014 36 1 7.9353 3.2726 0.7924 37 1 7.8097 5.0479 0.7850 38 1 6.4759 4.0640 1.4341 39 1 8.9724 6.9862 -1.0016 40 1 3.9196 3.5451 -0.5928 41 1 4.8113 3.2169 0.9033 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112088999.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:42 Heat of formation + Delta-G solvation = -19.536477 kcal Electronic energy + Delta-G solvation = -18256.222798 eV Core-core repulsion = 15682.339486 eV Total energy + Delta-G solvation = -2573.883312 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56528 -36.58098 -34.25706 -33.59715 -33.19511 -30.59875 -27.75705 -26.99503 -25.91976 -24.20986 -22.38863 -21.52424 -20.44798 -18.31040 -17.66812 -16.75522 -16.64008 -16.45244 -15.73996 -15.59049 -15.09337 -14.74107 -14.61930 -14.30178 -13.90502 -13.52276 -13.39408 -13.01537 -12.98228 -12.91478 -12.71070 -12.52593 -12.44404 -12.33351 -12.11491 -11.96650 -11.74047 -11.47245 -11.29747 -11.03433 -10.91166 -10.72476 -10.42828 -8.75294 -8.65017 -8.09258 -6.20144 0.69998 1.41754 1.43902 1.55668 1.67387 2.43796 3.19380 3.29492 3.62745 3.69221 4.03840 4.08942 4.12366 4.25639 4.27972 4.43961 4.55265 4.58710 4.63566 4.74548 4.82974 4.89418 4.92259 4.94917 4.95549 4.98555 5.11270 5.12833 5.20688 5.26018 5.30107 5.33709 5.46098 5.58413 5.72214 5.84382 6.25380 6.53043 6.75875 6.93917 7.49046 8.96882 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.033492 B = 0.005181 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.818402 B = 5403.105158 C = 5702.377214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 S -0.302 6.302 4 C -0.033 4.033 5 H 0.092 0.908 6 C -0.102 4.102 7 C -0.109 4.109 8 C -0.155 4.155 9 C 0.069 3.931 10 N -0.550 5.550 11 C 0.220 3.780 12 H -0.005 1.005 13 C -0.153 4.153 14 C -0.509 4.509 15 H 0.056 0.944 16 C 0.010 3.990 17 N -0.922 5.922 18 Si 0.959 3.041 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.280 1.280 22 C 0.089 3.911 23 H 0.093 0.907 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.055 0.945 38 H 0.020 0.980 39 H 0.260 0.740 40 H 0.048 0.952 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.138 -14.965 5.026 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.226 4.226 3 S -0.075 6.075 4 C -0.162 4.162 5 H 0.110 0.890 6 C -0.141 4.141 7 C -0.148 4.148 8 C -0.194 4.194 9 C -0.058 4.058 10 N -0.275 5.275 11 C 0.113 3.887 12 H 0.013 0.987 13 C -0.212 4.212 14 C -0.547 4.547 15 H 0.075 0.925 16 C -0.188 4.188 17 N -0.562 5.562 18 Si 0.785 3.215 19 H -0.192 1.192 20 H -0.209 1.209 21 H -0.206 1.206 22 C -0.040 4.040 23 H 0.112 0.888 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.038 0.962 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -10.829 -13.909 4.579 18.213 hybrid contribution 1.743 -0.106 0.133 1.751 sum -9.086 -14.015 4.711 17.355 Atomic orbital electron populations 1.21520 0.91218 1.03650 1.02742 1.23408 1.00710 0.92875 1.05655 1.87061 1.06071 1.16345 1.98031 1.22797 0.91841 0.99553 1.01988 0.89015 1.20838 0.97927 1.00431 0.94909 1.20548 0.93578 0.97719 1.02909 1.22237 0.99763 0.99746 0.97632 1.21726 0.96998 0.92259 0.94864 1.62011 1.04940 1.03917 1.56591 1.18996 0.91121 0.85885 0.92698 0.98721 1.22355 0.99121 1.02012 0.97735 1.21374 1.14641 1.04253 1.14477 0.92537 1.25692 0.99806 0.95283 0.97996 1.70032 1.39918 1.08874 1.37408 0.85484 0.78855 0.77991 0.79148 1.19156 1.20941 1.20571 1.21332 0.91310 0.95250 0.96097 0.88841 0.92005 0.92393 0.89676 0.88842 0.90030 0.92276 0.91199 0.90160 0.91096 0.92017 0.92589 0.91558 0.93530 0.92604 0.96156 0.93055 0.93348 0.95534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.92 71.98 0.71 -1.26 16 2 C -0.08 -1.43 6.36 71.98 0.46 -0.97 16 3 S -0.30 -8.30 20.86 -56.49 -1.18 -9.47 16 4 C -0.03 -0.97 2.34 30.21 0.07 -0.90 16 5 H 0.09 2.77 7.08 -2.39 -0.02 2.75 16 6 C -0.10 -2.46 4.69 28.86 0.14 -2.33 16 7 C -0.11 -2.54 5.30 28.86 0.15 -2.39 16 8 C -0.15 -4.79 4.26 30.21 0.13 -4.66 16 9 C 0.07 2.57 4.48 85.27 0.38 2.95 16 10 N -0.55 -23.84 4.64 -879.37 -4.08 -27.93 16 11 C 0.22 11.42 2.28 44.17 0.10 11.52 16 12 H -0.01 -0.30 8.02 -2.38 -0.02 -0.32 16 13 C -0.15 -7.46 7.26 71.98 0.52 -6.94 16 14 C -0.51 -28.31 7.63 25.60 0.20 -28.11 16 15 H 0.06 3.15 7.38 -2.91 -0.02 3.13 16 16 C 0.01 0.58 5.30 84.65 0.45 1.03 16 17 N -0.92 -53.75 11.32 21.45 0.24 -53.51 16 18 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 C 0.09 3.37 4.46 85.26 0.38 3.75 16 23 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 24 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.09 1.44 6.82 -2.39 -0.02 1.43 16 28 H 0.08 1.59 6.36 -2.39 -0.02 1.58 16 29 H 0.06 1.57 7.51 -2.39 -0.02 1.55 16 30 H 0.07 1.50 7.52 -2.39 -0.02 1.48 16 31 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 2.17 4.11 -2.39 -0.01 2.16 16 34 H 0.06 2.37 6.40 -2.38 -0.02 2.35 16 35 H 0.07 2.21 6.59 -2.38 -0.02 2.19 16 36 H 0.05 2.13 5.64 -2.38 -0.01 2.12 16 37 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 38 H 0.02 0.89 5.90 -2.39 -0.01 0.88 16 39 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 40 H 0.05 2.02 7.66 -2.39 -0.02 2.00 16 41 H 0.03 1.05 5.05 -2.39 -0.01 1.04 16 Total: -1.00 -61.20 307.22 1.69 -59.51 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 1.00 Total: 13.53 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 3.69 Total: -28.31 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -3.84 Total: -81.43 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.18 Total: -9.47 kcal Total: -61.20 1.69 -59.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112088999.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.973 kcal (2) G-P(sol) polarization free energy of solvation -61.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds