Wall clock time and date at job start Mon Mar 30 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81402 * 109.47034 * 2 1 4 4 C 1.81405 * 103.00065 * 179.97438 * 3 2 1 5 5 H 1.09004 * 108.75023 * 306.64832 * 4 3 2 6 6 C 1.50530 * 108.79087 * 64.99234 * 4 3 2 7 7 C 1.54517 * 108.86433 * 212.53231 * 6 4 3 8 8 C 1.45884 * 111.67311 * 282.75948 * 7 6 4 9 9 C 1.53990 * 112.65967 * 61.50204 * 8 7 6 10 10 N 1.44305 * 108.31100 * 278.59986 * 9 8 7 11 11 C 1.46903 * 110.99659 * 221.35148 * 10 9 8 12 12 H 1.09003 * 109.46808 * 186.05339 * 11 10 9 13 13 C 1.53000 * 109.47120 * 306.04933 * 11 10 9 14 14 C 1.50694 * 109.47066 * 66.04961 * 11 10 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.47944 * 113.65169 * 95.39846 * 10 9 8 23 23 H 1.08993 * 109.47139 * 300.00612 * 1 2 3 24 24 H 1.08998 * 109.46585 * 60.00397 * 1 2 3 25 25 H 1.08996 * 109.47118 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47743 * 239.99736 * 2 1 3 27 27 H 1.08998 * 109.46900 * 119.99156 * 2 1 3 28 28 H 1.08998 * 109.57111 * 92.72053 * 6 4 3 29 29 H 1.09004 * 109.57798 * 332.34986 * 6 4 3 30 30 H 1.09002 * 109.04420 * 162.19934 * 7 6 4 31 31 H 1.08993 * 109.04271 * 43.32284 * 7 6 4 32 32 H 1.08996 * 108.84222 * 300.68386 * 8 7 6 33 33 H 1.09000 * 108.84375 * 182.31751 * 8 7 6 34 34 H 1.08997 * 109.68957 * 158.89975 * 9 8 7 35 35 H 1.08995 * 109.72619 * 38.32434 * 9 8 7 36 36 H 1.08997 * 109.47359 * 180.02562 * 13 11 10 37 37 H 1.09007 * 109.47356 * 300.00024 * 13 11 10 38 38 H 1.09000 * 109.47156 * 59.99749 * 13 11 10 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.09008 * 108.71335 * 79.12432 * 22 10 9 41 41 H 1.08995 * 108.71124 * 197.13973 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9372 1.5059 0.0008 5 1 4.2156 0.8543 0.8291 6 6 4.3516 0.8525 -1.2904 7 6 5.5871 -0.0371 -1.0261 8 6 6.8063 0.7554 -0.9086 9 6 6.7567 1.7495 0.2664 10 7 6.0218 2.9166 -0.1580 11 6 6.6626 4.1468 0.3259 12 1 6.0330 5.0034 0.0850 13 6 6.8497 4.0620 1.8421 14 6 8.0059 4.3081 -0.3377 15 1 8.3495 3.5703 -1.0477 16 6 8.7967 5.3970 -0.0378 17 7 8.3785 6.2952 0.8271 18 14 10.4621 5.5965 -0.8600 19 1 11.1098 6.8402 -0.3709 20 1 11.3193 4.4293 -0.5316 21 1 10.2809 5.6791 -2.3316 22 6 4.5899 2.8836 0.2126 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8935 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 4.6037 1.6191 -2.0231 29 1 3.5338 0.2387 -1.6681 30 1 5.6998 -0.7429 -1.8491 31 1 5.4338 -0.5929 -0.1012 32 1 6.9554 1.3114 -1.8341 33 1 7.6513 0.0820 -0.7646 34 1 7.7700 2.0358 0.5482 35 1 6.2550 1.2887 1.1172 36 1 7.3247 4.9749 2.2012 37 1 5.8781 3.9453 2.3222 38 1 7.4792 3.2054 2.0831 39 1 8.9350 7.0610 1.0383 40 1 4.4941 3.1581 1.2632 41 1 4.0561 3.6196 -0.3885 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112089001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:45 Heat of formation + Delta-G solvation = -10.841739 kcal Electronic energy + Delta-G solvation = -18162.646614 eV Core-core repulsion = 15589.140334 eV Total energy + Delta-G solvation = -2573.506280 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.75044 -35.09325 -32.91679 -32.39545 -31.89141 -28.73202 -25.38853 -25.24413 -24.76691 -23.45902 -20.93508 -20.16026 -18.55641 -16.39191 -16.34841 -15.53500 -15.04665 -14.91033 -14.48560 -14.34836 -13.74325 -13.47129 -13.17751 -12.63527 -12.52255 -12.36001 -11.96527 -11.81200 -11.54064 -11.52329 -11.01839 -10.94432 -10.78648 -10.50994 -10.47642 -10.33787 -10.27406 -10.09605 -9.92093 -9.66734 -9.50019 -8.88776 -8.35886 -7.56785 -7.05349 -5.99163 -4.02652 1.72712 2.69333 3.33752 3.38212 3.41071 4.42273 4.78481 4.83442 4.86226 4.93208 5.19337 5.24080 5.32079 5.35640 5.51211 5.54246 5.61765 5.64737 5.67992 5.91692 5.96524 6.05775 6.22100 6.30792 6.34755 6.48300 6.49397 6.59219 6.69125 6.84051 6.90322 6.92694 7.16718 7.48506 7.74881 7.88696 8.22672 8.43655 8.61986 9.03892 9.62199 11.07914 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.035912 B = 0.005189 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.494083 B = 5394.691917 C = 5854.628560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 S -0.270 6.270 4 C -0.039 4.039 5 H 0.076 0.924 6 C -0.106 4.106 7 C -0.106 4.106 8 C -0.119 4.119 9 C 0.072 3.928 10 N -0.534 5.534 11 C 0.215 3.785 12 H 0.037 0.963 13 C -0.172 4.172 14 C -0.497 4.497 15 H 0.063 0.937 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.289 1.289 20 H -0.278 1.278 21 H -0.277 1.277 22 C 0.081 3.919 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.019 0.981 36 H 0.088 0.912 37 H 0.006 0.994 38 H 0.029 0.971 39 H 0.260 0.740 40 H 0.035 0.965 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.205 -12.719 -1.182 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.238 4.238 3 S -0.043 6.043 4 C -0.168 4.168 5 H 0.095 0.905 6 C -0.145 4.145 7 C -0.145 4.145 8 C -0.157 4.157 9 C -0.057 4.057 10 N -0.259 5.259 11 C 0.109 3.891 12 H 0.055 0.945 13 C -0.231 4.231 14 C -0.535 4.535 15 H 0.081 0.919 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.215 1.215 20 H -0.204 1.204 21 H -0.203 1.203 22 C -0.047 4.047 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.037 0.963 36 H 0.107 0.893 37 H 0.025 0.975 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.757 -11.594 -1.564 15.893 hybrid contribution 1.575 -0.962 0.599 1.940 sum -9.182 -12.556 -0.966 15.585 Atomic orbital electron populations 1.21494 0.92521 1.02138 1.03143 1.23290 0.99791 0.96106 1.04634 1.86868 1.07313 1.12092 1.97989 1.23033 0.91162 1.01443 1.01131 0.90533 1.21664 0.96986 0.99152 0.96671 1.20556 0.95751 0.97679 1.00487 1.20556 0.96155 0.97650 1.01359 1.21660 0.99600 0.90741 0.93734 1.61070 0.98840 1.04023 1.61950 1.19315 0.94152 0.85785 0.89802 0.94461 1.22436 0.97282 1.02917 1.00448 1.21056 1.00898 1.07661 1.23932 0.91916 1.24926 0.98256 0.95804 0.95297 1.69881 1.37663 1.12091 1.33782 0.86587 0.83896 0.77222 0.79839 1.21461 1.20402 1.20252 1.22015 0.90777 0.92722 0.99214 0.91800 0.91727 0.91463 0.90177 0.90549 0.89488 0.92590 0.92709 0.93405 0.90894 0.93238 0.89793 0.96284 0.89304 0.97462 0.95191 0.92976 0.94672 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 9.92 37.16 0.37 -0.81 16 2 C -0.09 -0.95 6.36 37.16 0.24 -0.71 16 3 S -0.27 -3.83 20.83 -107.50 -2.24 -6.07 16 4 C -0.04 -0.59 2.12 -27.49 -0.06 -0.65 16 5 H 0.08 1.17 6.66 -51.88 -0.35 0.82 16 6 C -0.11 -1.50 5.08 -27.17 -0.14 -1.64 16 7 C -0.11 -1.44 5.35 -29.30 -0.16 -1.60 16 8 C -0.12 -1.92 5.37 -29.58 -0.16 -2.08 16 9 C 0.07 1.36 3.86 -4.70 -0.02 1.35 16 10 N -0.53 -11.17 3.92 -228.04 -0.89 -12.06 16 11 C 0.22 5.35 2.27 -68.87 -0.16 5.19 16 12 H 0.04 1.03 8.04 -51.93 -0.42 0.61 16 13 C -0.17 -4.13 8.47 37.16 0.31 -3.82 16 14 C -0.50 -13.34 7.57 -34.44 -0.26 -13.60 16 15 H 0.06 1.68 7.61 -52.49 -0.40 1.28 16 16 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 17 N -0.89 -25.35 11.32 55.43 0.63 -24.72 16 18 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.08 1.52 4.65 -2.77 -0.01 1.51 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.80 6.80 -51.93 -0.35 0.44 16 27 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 28 H 0.09 1.41 7.78 -51.93 -0.40 1.01 16 29 H 0.06 0.71 6.10 -51.93 -0.32 0.39 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.62 7.59 -51.93 -0.39 0.23 16 32 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.79 5.79 -51.93 -0.30 1.49 16 35 H 0.02 0.35 6.79 -51.93 -0.35 -0.01 16 36 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 37 H 0.01 0.15 6.63 -51.93 -0.34 -0.20 16 38 H 0.03 0.69 6.52 -51.93 -0.34 0.35 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.04 0.69 6.40 -51.92 -0.33 0.36 16 41 H 0.07 1.38 7.96 -51.93 -0.41 0.96 16 LS Contribution 315.24 15.07 4.75 4.75 Total: -1.00 -27.23 315.24 -10.03 -37.26 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.12 Total: 0.02 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -0.13 Total: -15.37 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.27 Total: -36.79 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -3.83 SS G_CDS: -2.24 Total: -6.07 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.23 -10.03 -37.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112089001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.415 kcal (2) G-P(sol) polarization free energy of solvation -27.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds