Wall clock time and date at job start Mon Mar 30 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81402 * 109.47034 * 2 1 4 4 C 1.81405 * 103.00065 * 179.97438 * 3 2 1 5 5 H 1.09004 * 108.75023 * 306.64832 * 4 3 2 6 6 C 1.50530 * 108.79087 * 64.99234 * 4 3 2 7 7 C 1.54517 * 108.86433 * 212.53231 * 6 4 3 8 8 C 1.45884 * 111.67311 * 282.75948 * 7 6 4 9 9 C 1.53990 * 112.65967 * 61.50204 * 8 7 6 10 10 N 1.44305 * 108.31100 * 278.59986 * 9 8 7 11 11 C 1.46903 * 110.99659 * 221.35148 * 10 9 8 12 12 H 1.09003 * 109.46808 * 186.05339 * 11 10 9 13 13 C 1.53000 * 109.47120 * 306.04933 * 11 10 9 14 14 C 1.50694 * 109.47066 * 66.04961 * 11 10 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.47944 * 113.65169 * 95.39846 * 10 9 8 23 23 H 1.08993 * 109.47139 * 300.00612 * 1 2 3 24 24 H 1.08998 * 109.46585 * 60.00397 * 1 2 3 25 25 H 1.08996 * 109.47118 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47743 * 239.99736 * 2 1 3 27 27 H 1.08998 * 109.46900 * 119.99156 * 2 1 3 28 28 H 1.08998 * 109.57111 * 92.72053 * 6 4 3 29 29 H 1.09004 * 109.57798 * 332.34986 * 6 4 3 30 30 H 1.09002 * 109.04420 * 162.19934 * 7 6 4 31 31 H 1.08993 * 109.04271 * 43.32284 * 7 6 4 32 32 H 1.08996 * 108.84222 * 300.68386 * 8 7 6 33 33 H 1.09000 * 108.84375 * 182.31751 * 8 7 6 34 34 H 1.08997 * 109.68957 * 158.89975 * 9 8 7 35 35 H 1.08995 * 109.72619 * 38.32434 * 9 8 7 36 36 H 1.08997 * 109.47359 * 180.02562 * 13 11 10 37 37 H 1.09007 * 109.47356 * 300.00024 * 13 11 10 38 38 H 1.09000 * 109.47156 * 59.99749 * 13 11 10 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.09008 * 108.71335 * 79.12432 * 22 10 9 41 41 H 1.08995 * 108.71124 * 197.13973 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9372 1.5059 0.0008 5 1 4.2156 0.8543 0.8291 6 6 4.3516 0.8525 -1.2904 7 6 5.5871 -0.0371 -1.0261 8 6 6.8063 0.7554 -0.9086 9 6 6.7567 1.7495 0.2664 10 7 6.0218 2.9166 -0.1580 11 6 6.6626 4.1468 0.3259 12 1 6.0330 5.0034 0.0850 13 6 6.8497 4.0620 1.8421 14 6 8.0059 4.3081 -0.3377 15 1 8.3495 3.5703 -1.0477 16 6 8.7967 5.3970 -0.0378 17 7 8.3785 6.2952 0.8271 18 14 10.4621 5.5965 -0.8600 19 1 11.1098 6.8402 -0.3709 20 1 11.3193 4.4293 -0.5316 21 1 10.2809 5.6791 -2.3316 22 6 4.5899 2.8836 0.2126 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8935 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 4.6037 1.6191 -2.0231 29 1 3.5338 0.2387 -1.6681 30 1 5.6998 -0.7429 -1.8491 31 1 5.4338 -0.5929 -0.1012 32 1 6.9554 1.3114 -1.8341 33 1 7.6513 0.0820 -0.7646 34 1 7.7700 2.0358 0.5482 35 1 6.2550 1.2887 1.1172 36 1 7.3247 4.9749 2.2012 37 1 5.8781 3.9453 2.3222 38 1 7.4792 3.2054 2.0831 39 1 8.9350 7.0610 1.0383 40 1 4.4941 3.1581 1.2632 41 1 4.0561 3.6196 -0.3885 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112089001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:44 Heat of formation + Delta-G solvation = -25.051475 kcal Electronic energy + Delta-G solvation = -18163.262794 eV Core-core repulsion = 15589.140334 eV Total energy + Delta-G solvation = -2574.122460 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.26544 -36.70709 -34.32560 -33.62976 -33.29150 -30.56551 -27.35066 -26.71544 -26.29423 -24.31355 -22.66722 -21.37493 -20.19050 -18.32841 -17.71403 -16.85800 -16.61003 -16.14965 -15.90264 -15.54516 -15.11418 -14.89489 -14.68955 -14.15373 -13.96057 -13.64690 -13.27637 -13.16570 -12.95491 -12.89004 -12.68801 -12.44191 -12.33647 -12.15042 -12.06514 -11.95433 -11.84372 -11.53130 -11.29943 -11.24050 -10.89183 -10.62261 -10.46397 -8.76954 -8.67781 -8.09107 -6.19768 0.65501 1.44048 1.45775 1.53183 1.66126 2.44167 3.19964 3.33752 3.57966 3.92362 4.04269 4.07859 4.14890 4.20039 4.30684 4.36742 4.51540 4.60978 4.65214 4.73787 4.81591 4.87551 4.88273 4.92967 4.95492 4.99053 5.12383 5.20903 5.25395 5.29679 5.37526 5.40322 5.53171 5.60124 5.73269 5.83071 6.25075 6.56739 6.77966 6.95367 7.49300 8.97061 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.035912 B = 0.005189 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.494083 B = 5394.691917 C = 5854.628560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.076 4.076 3 S -0.311 6.311 4 C -0.027 4.027 5 H 0.082 0.918 6 C -0.100 4.100 7 C -0.102 4.102 8 C -0.110 4.110 9 C 0.072 3.928 10 N -0.538 5.538 11 C 0.220 3.780 12 H -0.002 1.002 13 C -0.156 4.156 14 C -0.508 4.508 15 H 0.059 0.941 16 C 0.010 3.990 17 N -0.923 5.923 18 Si 0.960 3.040 19 H -0.287 1.287 20 H -0.269 1.269 21 H -0.274 1.274 22 C 0.086 3.914 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.030 0.970 36 H 0.061 0.939 37 H 0.018 0.982 38 H 0.034 0.966 39 H 0.260 0.740 40 H 0.021 0.979 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.577 -15.458 -1.763 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.224 4.224 3 S -0.084 6.084 4 C -0.156 4.156 5 H 0.101 0.899 6 C -0.139 4.139 7 C -0.141 4.141 8 C -0.148 4.148 9 C -0.056 4.056 10 N -0.263 5.263 11 C 0.113 3.887 12 H 0.016 0.984 13 C -0.215 4.215 14 C -0.547 4.547 15 H 0.077 0.923 16 C -0.188 4.188 17 N -0.563 5.563 18 Si 0.785 3.215 19 H -0.212 1.212 20 H -0.195 1.195 21 H -0.199 1.199 22 C -0.042 4.042 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.135 -14.353 -2.151 18.293 hybrid contribution 1.598 -0.122 0.796 1.789 sum -9.537 -14.475 -1.355 17.387 Atomic orbital electron populations 1.21519 0.91163 1.03676 1.02749 1.23413 1.00689 0.92618 1.05723 1.87069 1.06592 1.16645 1.98110 1.22826 0.91728 0.98934 1.02083 0.89921 1.21629 0.98201 0.98852 0.95260 1.20525 0.93771 0.97470 1.02314 1.20475 0.98501 0.97145 0.98719 1.21684 0.97756 0.90580 0.95606 1.60988 1.00007 1.03288 1.61993 1.19058 0.93093 0.86447 0.90140 0.98363 1.22222 0.97645 1.01635 1.00033 1.21293 1.01777 1.07670 1.23920 0.92280 1.25703 1.01731 0.95513 0.95848 1.70020 1.38889 1.12492 1.34912 0.85586 0.79733 0.77338 0.78810 1.21223 1.19453 1.19885 1.21951 0.89490 0.95006 0.97796 0.92314 0.92084 0.88777 0.88883 0.89545 0.91895 0.90273 0.90157 0.91845 0.92893 0.91438 0.92477 0.95224 0.91976 0.96291 0.94654 0.93045 0.96105 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.92 71.98 0.71 -1.22 16 2 C -0.08 -1.37 6.36 71.98 0.46 -0.91 16 3 S -0.31 -8.47 20.83 -56.49 -1.18 -9.65 16 4 C -0.03 -0.79 2.12 30.10 0.06 -0.73 16 5 H 0.08 2.33 6.66 -2.41 -0.02 2.32 16 6 C -0.10 -2.64 5.08 30.31 0.15 -2.48 16 7 C -0.10 -2.44 5.35 28.93 0.15 -2.29 16 8 C -0.11 -3.35 5.37 28.75 0.15 -3.20 16 9 C 0.07 2.72 3.86 87.12 0.34 3.06 16 10 N -0.54 -23.01 3.92 -875.38 -3.43 -26.44 16 11 C 0.22 11.35 2.27 44.17 0.10 11.45 16 12 H 0.00 -0.09 8.04 -2.39 -0.02 -0.11 16 13 C -0.16 -7.75 8.47 71.98 0.61 -7.14 16 14 C -0.51 -27.97 7.57 25.60 0.19 -27.78 16 15 H 0.06 3.23 7.61 -2.91 -0.02 3.20 16 16 C 0.01 0.57 5.30 84.66 0.45 1.02 16 17 N -0.92 -53.71 11.32 21.45 0.24 -53.47 16 18 Si 0.96 43.89 29.54 68.60 2.03 45.91 16 19 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 C 0.09 3.29 4.65 86.41 0.40 3.69 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.09 1.47 6.80 -2.39 -0.02 1.45 16 27 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.99 7.78 -2.39 -0.02 1.97 16 29 H 0.08 1.73 6.10 -2.38 -0.01 1.72 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.37 7.59 -2.39 -0.02 1.35 16 32 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 2.45 5.79 -2.39 -0.01 2.44 16 35 H 0.03 1.04 6.79 -2.39 -0.02 1.03 16 36 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 37 H 0.02 0.85 6.63 -2.38 -0.02 0.83 16 38 H 0.03 1.66 6.52 -2.39 -0.02 1.65 16 39 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.02 0.84 6.40 -2.38 -0.02 0.83 16 41 H 0.05 2.16 7.96 -2.39 -0.02 2.14 16 Total: -1.00 -60.30 315.24 2.43 -57.87 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.98 Total: 12.29 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 3.79 Total: -26.53 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -3.19 Total: -79.91 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.18 Total: -9.65 kcal Total: -60.30 2.43 -57.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112089001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.823 kcal (2) G-P(sol) polarization free energy of solvation -60.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds