Wall clock time and date at job start Mon Mar 30 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 S 1.81397 * 109.47300 * 2 1 4 4 C 1.81394 * 103.00449 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47557 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47177 * 185.26213 * 5 4 3 7 7 H 1.08993 * 109.47092 * 54.07801 * 6 5 4 8 8 C 1.53009 * 109.46965 * 174.08012 * 6 5 4 9 9 N 1.46905 * 109.46963 * 294.07530 * 6 5 4 10 10 C 1.46904 * 110.99750 * 158.88580 * 9 6 5 11 11 C 1.52999 * 109.47046 * 174.67796 * 10 9 6 12 12 C 1.50702 * 115.54547 * 39.66207 * 11 10 9 13 13 H 1.07997 * 120.00171 * 265.00791 * 12 11 10 14 14 C 1.37882 * 119.99991 * 85.01305 * 12 11 10 15 15 N 1.31506 * 120.00065 * 184.72321 * 14 12 11 16 16 Si 1.86803 * 119.99950 * 4.72845 * 14 12 11 17 17 H 1.48493 * 109.47214 * 94.54574 * 16 14 12 18 18 H 1.48500 * 109.46797 * 214.54658 * 16 14 12 19 19 H 1.48498 * 109.46973 * 334.54513 * 16 14 12 20 20 C 1.52993 * 117.49989 * 253.95226 * 11 10 9 21 21 C 1.52992 * 117.49696 * 185.32822 * 11 10 9 22 22 H 1.09004 * 109.47353 * 60.00460 * 1 2 3 23 23 H 1.09004 * 109.47330 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47694 * 299.99774 * 1 2 3 25 25 H 1.09007 * 109.47131 * 239.99941 * 2 1 3 26 26 H 1.08996 * 109.47338 * 119.99867 * 2 1 3 27 27 H 1.09005 * 109.47270 * 59.99647 * 4 3 2 28 28 H 1.09001 * 109.47242 * 299.99895 * 4 3 2 29 29 H 1.09004 * 109.46811 * 65.25862 * 5 4 3 30 30 H 1.09004 * 109.47141 * 305.26077 * 5 4 3 31 31 H 1.09004 * 109.46698 * 299.99590 * 8 6 5 32 32 H 1.08998 * 109.46801 * 59.99554 * 8 6 5 33 33 H 1.08998 * 109.46995 * 180.02562 * 8 6 5 34 34 H 1.00896 * 110.99827 * 34.93619 * 9 6 5 35 35 H 1.08996 * 109.46839 * 294.68142 * 10 9 6 36 36 H 1.09006 * 109.46925 * 54.68148 * 10 9 6 37 37 H 0.96996 * 120.00392 * 180.02562 * 15 14 12 38 38 H 1.09004 * 117.50306 * 0.02562 * 20 11 10 39 39 H 1.08998 * 117.49846 * 145.01990 * 20 11 10 40 40 H 1.09000 * 117.50067 * 214.97840 * 21 11 10 41 41 H 1.09002 * 117.50211 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9370 1.5059 -0.0008 5 6 4.6064 2.8817 -0.0015 6 6 6.1211 2.7118 -0.1345 7 1 6.3430 2.1060 -1.0129 8 6 6.7772 4.0860 -0.2836 9 7 6.6463 2.0460 1.0651 10 6 7.9481 1.4219 0.7934 11 6 8.5233 0.8554 2.0930 12 6 7.5277 0.1925 3.0097 13 1 7.0772 0.7544 3.8146 14 6 7.1918 -1.1314 2.8210 15 7 6.2556 -1.6842 3.5608 16 14 8.0668 -2.1398 1.5145 17 1 9.2006 -2.8733 2.1321 18 1 7.1145 -3.1112 0.9189 19 1 8.5807 -1.2365 0.4538 20 6 9.6856 1.6113 2.7398 21 6 9.9367 0.2718 2.0446 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 4.2398 0.9544 -0.8910 28 1 4.2406 0.9542 0.8890 29 1 4.3790 3.3968 0.9318 30 1 4.2315 3.4677 -0.8407 31 1 6.3875 4.5800 -1.1737 32 1 6.5552 4.6918 0.5949 33 1 7.8563 3.9650 -0.3788 34 1 5.9879 1.3691 1.4204 35 1 7.8208 0.6160 0.0706 36 1 8.6315 2.1685 0.3886 37 1 6.0196 -2.6156 3.4284 38 1 10.0403 2.5126 2.2397 39 1 9.7303 1.6295 3.8287 40 1 10.1467 -0.5914 2.6763 41 1 10.4567 0.2910 1.0868 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133885455.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:57 Heat of formation + Delta-G solvation = 4.920934 kcal Electronic energy + Delta-G solvation = -17647.541517 eV Core-core repulsion = 15074.718758 eV Total energy + Delta-G solvation = -2572.822759 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -37.80966 -36.17585 -32.77948 -32.10010 -31.70434 -29.41202 -25.82287 -24.79781 -23.93608 -22.58531 -21.57244 -19.86841 -18.89065 -16.31558 -16.12187 -15.53421 -15.25564 -14.88570 -14.63739 -14.20922 -13.87038 -13.58010 -13.39227 -12.75283 -12.55515 -12.33331 -12.23553 -11.98621 -11.68592 -11.54651 -11.40052 -11.15009 -11.04795 -10.91902 -10.57927 -10.39419 -10.22965 -10.03761 -9.84230 -9.42307 -9.02911 -8.61516 -8.39057 -7.59699 -7.48993 -6.11611 -4.11897 1.77730 2.71287 3.24495 3.34713 3.40574 4.40095 4.69471 4.92145 4.94182 4.99090 5.07370 5.16629 5.21400 5.31012 5.36326 5.65316 5.68547 5.72319 5.77130 5.81372 5.90207 5.98198 6.00267 6.07812 6.17227 6.18723 6.26807 6.38150 6.43856 6.51322 6.54370 6.65852 6.78743 7.06911 7.18200 7.76268 7.92597 8.28872 8.56987 8.96933 9.52214 10.99643 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.006706 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.307291 B = 4174.632699 C = 5356.405446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 S -0.273 6.273 4 C -0.087 4.087 5 C -0.099 4.099 6 C 0.084 3.916 7 H 0.032 0.968 8 C -0.136 4.136 9 N -0.668 5.668 10 C 0.098 3.902 11 C 0.009 3.991 12 C -0.473 4.473 13 H 0.080 0.920 14 C 0.074 3.926 15 N -0.898 5.898 16 Si 0.870 3.130 17 H -0.280 1.280 18 H -0.297 1.297 19 H -0.256 1.256 20 C -0.175 4.175 21 C -0.208 4.208 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.357 0.643 35 H 0.017 0.983 36 H 0.048 0.952 37 H 0.262 0.738 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.213 5.503 -9.546 12.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.239 4.239 3 S -0.046 6.046 4 C -0.235 4.235 5 C -0.138 4.138 6 C -0.028 4.028 7 H 0.050 0.950 8 C -0.194 4.194 9 N -0.304 5.304 10 C -0.031 4.031 11 C 0.008 3.992 12 C -0.510 4.510 13 H 0.098 0.902 14 C -0.128 4.128 15 N -0.536 5.536 16 Si 0.698 3.302 17 H -0.206 1.206 18 H -0.225 1.225 19 H -0.180 1.180 20 C -0.212 4.212 21 C -0.245 4.245 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.180 0.820 35 H 0.035 0.965 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.676 6.809 -9.246 12.809 hybrid contribution 1.054 -2.768 -1.175 3.187 sum -4.622 4.041 -10.421 12.095 Atomic orbital electron populations 1.21495 0.92476 1.02320 1.02936 1.23289 0.99887 0.95537 1.05211 1.86618 1.06805 1.13051 1.98167 1.23488 0.92291 1.02229 1.05484 1.21465 0.94211 0.94496 1.03591 1.21498 0.92421 0.96040 0.92873 0.95023 1.21764 1.00365 0.96308 1.00959 1.60433 1.05503 1.36744 1.27724 1.21590 0.90737 0.94750 0.96066 1.19385 0.87120 0.98133 0.94604 1.20276 1.22187 0.95058 1.13515 0.90159 1.24982 0.94561 0.97621 0.95603 1.69911 1.30169 1.13197 1.40287 0.86995 0.79580 0.80245 0.83339 1.20637 1.22461 1.17971 1.22786 1.06082 0.93217 0.99125 1.22974 1.03487 0.97393 1.00686 0.91991 0.91301 0.91658 0.90410 0.89618 0.90642 0.88821 0.89954 0.91084 0.93360 0.91918 0.92881 0.81972 0.96508 0.93338 0.92786 0.91151 0.89866 0.89815 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 9.92 37.15 0.37 -1.00 16 2 C -0.09 -1.14 6.66 37.15 0.25 -0.89 16 3 S -0.27 -3.90 21.74 -107.50 -2.34 -6.24 16 4 C -0.09 -1.30 5.67 37.16 0.21 -1.09 16 5 C -0.10 -1.41 4.83 -26.73 -0.13 -1.54 16 6 C 0.08 1.30 2.64 -67.71 -0.18 1.12 16 7 H 0.03 0.50 7.92 -51.93 -0.41 0.09 16 8 C -0.14 -1.87 9.37 37.16 0.35 -1.52 16 9 N -0.67 -12.86 6.06 -106.72 -0.65 -13.51 16 10 C 0.10 2.00 5.42 -3.82 -0.02 1.98 16 11 C 0.01 0.20 1.19 -155.67 -0.19 0.01 16 12 C -0.47 -12.62 8.07 -34.44 -0.28 -12.90 16 13 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 14 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 15 N -0.90 -26.26 13.96 55.43 0.77 -25.49 16 16 Si 0.87 21.13 25.18 -169.99 -4.28 16.85 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 18 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 19 H -0.26 -5.90 5.25 56.52 0.30 -5.60 16 20 C -0.17 -3.61 9.88 -26.74 -0.26 -3.88 16 21 C -0.21 -4.43 7.33 -26.74 -0.20 -4.63 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 26 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.07 1.09 8.14 -51.92 -0.42 0.66 16 28 H 0.09 1.62 6.65 -51.92 -0.35 1.28 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.75 7.14 -51.93 -0.37 0.38 16 34 H 0.36 7.56 5.62 -39.29 -0.22 7.34 16 35 H 0.02 0.36 6.67 -51.93 -0.35 0.01 16 36 H 0.05 0.91 6.87 -51.93 -0.36 0.56 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 39 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 40 H 0.08 1.87 7.11 -51.93 -0.37 1.51 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -27.88 332.96 -9.22 -37.10 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -7.58 Total: 8.67 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -0.17 Total: -22.39 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.13 Total: -39.00 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.28 Total: 16.85 kcal Atomic # 16 Polarization: -3.90 SS G_CDS: -2.34 Total: -6.24 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.88 -9.22 -37.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133885455.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.021 kcal (2) G-P(sol) polarization free energy of solvation -27.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds