Wall clock time and date at job start Mon Mar 30 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 S 1.81397 * 109.47300 * 2 1 4 4 C 1.81394 * 103.00449 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47557 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47177 * 185.26213 * 5 4 3 7 7 H 1.08993 * 109.47092 * 54.07801 * 6 5 4 8 8 C 1.53009 * 109.46965 * 174.08012 * 6 5 4 9 9 N 1.46905 * 109.46963 * 294.07530 * 6 5 4 10 10 C 1.46904 * 110.99750 * 158.88580 * 9 6 5 11 11 C 1.52999 * 109.47046 * 174.67796 * 10 9 6 12 12 C 1.50702 * 115.54547 * 39.66207 * 11 10 9 13 13 H 1.07997 * 120.00171 * 265.00791 * 12 11 10 14 14 C 1.37882 * 119.99991 * 85.01305 * 12 11 10 15 15 N 1.31506 * 120.00065 * 184.72321 * 14 12 11 16 16 Si 1.86803 * 119.99950 * 4.72845 * 14 12 11 17 17 H 1.48493 * 109.47214 * 94.54574 * 16 14 12 18 18 H 1.48500 * 109.46797 * 214.54658 * 16 14 12 19 19 H 1.48498 * 109.46973 * 334.54513 * 16 14 12 20 20 C 1.52993 * 117.49989 * 253.95226 * 11 10 9 21 21 C 1.52992 * 117.49696 * 185.32822 * 11 10 9 22 22 H 1.09004 * 109.47353 * 60.00460 * 1 2 3 23 23 H 1.09004 * 109.47330 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47694 * 299.99774 * 1 2 3 25 25 H 1.09007 * 109.47131 * 239.99941 * 2 1 3 26 26 H 1.08996 * 109.47338 * 119.99867 * 2 1 3 27 27 H 1.09005 * 109.47270 * 59.99647 * 4 3 2 28 28 H 1.09001 * 109.47242 * 299.99895 * 4 3 2 29 29 H 1.09004 * 109.46811 * 65.25862 * 5 4 3 30 30 H 1.09004 * 109.47141 * 305.26077 * 5 4 3 31 31 H 1.09004 * 109.46698 * 299.99590 * 8 6 5 32 32 H 1.08998 * 109.46801 * 59.99554 * 8 6 5 33 33 H 1.08998 * 109.46995 * 180.02562 * 8 6 5 34 34 H 1.00896 * 110.99827 * 34.93619 * 9 6 5 35 35 H 1.08996 * 109.46839 * 294.68142 * 10 9 6 36 36 H 1.09006 * 109.46925 * 54.68148 * 10 9 6 37 37 H 0.96996 * 120.00392 * 180.02562 * 15 14 12 38 38 H 1.09004 * 117.50306 * 0.02562 * 20 11 10 39 39 H 1.08998 * 117.49846 * 145.01990 * 20 11 10 40 40 H 1.09000 * 117.50067 * 214.97840 * 21 11 10 41 41 H 1.09002 * 117.50211 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9370 1.5059 -0.0008 5 6 4.6064 2.8817 -0.0015 6 6 6.1211 2.7118 -0.1345 7 1 6.3430 2.1060 -1.0129 8 6 6.7772 4.0860 -0.2836 9 7 6.6463 2.0460 1.0651 10 6 7.9481 1.4219 0.7934 11 6 8.5233 0.8554 2.0930 12 6 7.5277 0.1925 3.0097 13 1 7.0772 0.7544 3.8146 14 6 7.1918 -1.1314 2.8210 15 7 6.2556 -1.6842 3.5608 16 14 8.0668 -2.1398 1.5145 17 1 9.2006 -2.8733 2.1321 18 1 7.1145 -3.1112 0.9189 19 1 8.5807 -1.2365 0.4538 20 6 9.6856 1.6113 2.7398 21 6 9.9367 0.2718 2.0446 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 4.2398 0.9544 -0.8910 28 1 4.2406 0.9542 0.8890 29 1 4.3790 3.3968 0.9318 30 1 4.2315 3.4677 -0.8407 31 1 6.3875 4.5800 -1.1737 32 1 6.5552 4.6918 0.5949 33 1 7.8563 3.9650 -0.3788 34 1 5.9879 1.3691 1.4204 35 1 7.8208 0.6160 0.0706 36 1 8.6315 2.1685 0.3886 37 1 6.0196 -2.6156 3.4284 38 1 10.0403 2.5126 2.2397 39 1 9.7303 1.6295 3.8287 40 1 10.1467 -0.5914 2.6763 41 1 10.4567 0.2910 1.0868 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133885455.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:57 Heat of formation + Delta-G solvation = -10.785884 kcal Electronic energy + Delta-G solvation = -17648.222616 eV Core-core repulsion = 15074.718758 eV Total energy + Delta-G solvation = -2573.503858 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.35923 -37.66597 -34.20777 -33.70758 -33.08264 -30.64246 -27.78500 -26.27684 -25.11557 -23.69491 -23.25449 -21.16847 -20.70763 -18.21906 -17.31698 -16.94224 -16.69988 -16.50116 -15.78711 -15.49514 -15.25168 -15.01249 -14.78111 -14.67740 -14.05515 -13.68033 -13.43569 -13.25902 -13.06229 -12.72703 -12.71090 -12.62200 -12.46728 -12.21774 -12.13692 -11.94513 -11.81680 -11.40738 -11.27818 -10.98879 -10.96490 -10.53828 -10.20153 -9.05002 -8.70308 -8.25326 -6.28476 0.66242 1.31039 1.35899 1.47373 1.58068 2.36599 3.06193 3.17870 3.56452 3.78752 3.88195 3.95892 4.03611 4.09892 4.22714 4.39203 4.45152 4.47028 4.50070 4.56931 4.67928 4.74187 4.82745 4.87733 4.88298 4.88807 4.92409 5.03454 5.08059 5.13367 5.17267 5.22447 5.36842 5.48799 5.52088 5.77554 6.34995 6.51599 6.67131 6.82338 7.38079 8.89677 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.006706 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.307291 B = 4174.632699 C = 5356.405446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.090 4.090 3 S -0.285 6.285 4 C -0.082 4.082 5 C -0.089 4.089 6 C 0.083 3.917 7 H 0.037 0.963 8 C -0.130 4.130 9 N -0.681 5.681 10 C 0.106 3.894 11 C -0.019 4.019 12 C -0.462 4.462 13 H 0.032 0.968 14 C 0.024 3.976 15 N -0.946 5.946 16 Si 0.927 3.073 17 H -0.279 1.279 18 H -0.302 1.302 19 H -0.230 1.230 20 C -0.162 4.162 21 C -0.200 4.200 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.341 0.659 35 H 0.009 0.991 36 H 0.072 0.928 37 H 0.262 0.738 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.305 6.329 -12.089 14.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.238 4.238 3 S -0.059 6.059 4 C -0.230 4.230 5 C -0.128 4.128 6 C -0.029 4.029 7 H 0.055 0.945 8 C -0.188 4.188 9 N -0.315 5.315 10 C -0.024 4.024 11 C -0.020 4.020 12 C -0.500 4.500 13 H 0.050 0.950 14 C -0.173 4.173 15 N -0.586 5.586 16 Si 0.753 3.247 17 H -0.205 1.205 18 H -0.230 1.230 19 H -0.153 1.153 20 C -0.199 4.199 21 C -0.238 4.238 22 H 0.089 0.911 23 H 0.106 0.894 24 H 0.079 0.921 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.162 0.838 35 H 0.027 0.973 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.745 7.671 -11.800 14.853 hybrid contribution 0.712 -2.968 -0.293 3.066 sum -4.033 4.703 -12.093 13.588 Atomic orbital electron populations 1.21503 0.90505 1.03624 1.03133 1.23398 1.01533 0.93973 1.04909 1.86598 1.06206 1.14959 1.98126 1.23391 0.93028 1.02471 1.04149 1.21403 0.93558 0.94044 1.03794 1.21634 0.93101 0.96728 0.91420 0.94483 1.21730 1.00229 0.94959 1.01920 1.60463 1.05073 1.36099 1.29869 1.21493 0.91506 0.95092 0.94266 1.19403 0.87112 0.99949 0.95561 1.20299 1.22328 0.94770 1.12642 0.95025 1.25676 0.95184 0.98760 0.97713 1.70053 1.32317 1.13522 1.42706 0.86080 0.78276 0.78866 0.81489 1.20519 1.22951 1.15315 1.22823 1.04058 0.94265 0.98774 1.23000 1.01850 0.97150 1.01815 0.91133 0.89401 0.92079 0.89446 0.91179 0.89981 0.92020 0.91237 0.88877 0.90687 0.92630 0.92911 0.83814 0.97253 0.90977 0.92932 0.88110 0.91039 0.91244 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.92 71.98 0.71 -1.77 16 2 C -0.09 -2.21 6.66 71.98 0.48 -1.74 16 3 S -0.29 -8.06 21.74 -56.49 -1.23 -9.29 16 4 C -0.08 -2.46 5.67 71.98 0.41 -2.06 16 5 C -0.09 -2.46 4.83 30.59 0.15 -2.31 16 6 C 0.08 2.42 2.64 44.92 0.12 2.54 16 7 H 0.04 1.07 7.92 -2.39 -0.02 1.05 16 8 C -0.13 -3.22 9.37 71.99 0.67 -2.54 16 9 N -0.68 -25.85 6.06 -491.54 -2.98 -28.83 16 10 C 0.11 4.11 5.42 86.30 0.47 4.57 16 11 C -0.02 -0.85 1.19 -52.93 -0.06 -0.91 16 12 C -0.46 -25.35 8.07 25.60 0.21 -25.15 16 13 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 14 C 0.02 1.34 5.47 84.66 0.46 1.80 16 15 N -0.95 -57.54 13.96 21.45 0.30 -57.24 16 16 Si 0.93 43.51 25.18 68.60 1.73 45.24 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 19 H -0.23 -9.80 5.25 99.48 0.52 -9.27 16 20 C -0.16 -6.35 9.88 30.59 0.30 -6.04 16 21 C -0.20 -8.01 7.33 30.59 0.22 -7.79 16 22 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.06 2.25 6.65 -2.39 -0.02 2.23 16 29 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.30 7.14 -2.39 -0.02 1.29 16 34 H 0.34 14.84 5.62 -89.70 -0.50 14.34 16 35 H 0.01 0.38 6.67 -2.39 -0.02 0.36 16 36 H 0.07 2.45 6.87 -2.38 -0.02 2.43 16 37 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.10 3.34 8.08 -2.39 -0.02 3.32 16 39 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.07 2.97 7.11 -2.39 -0.02 2.96 16 41 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -61.35 332.96 2.25 -59.11 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.28 Total: 32.40 kcal Atomic # 6 Polarization: -45.53 SS G_CDS: 4.14 Total: -41.39 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -2.68 Total: -86.07 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.73 Total: 45.24 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.23 Total: -9.29 kcal Total: -61.35 2.25 -59.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133885455.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.321 kcal (2) G-P(sol) polarization free energy of solvation -61.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds