Wall clock time and date at job start Mon Mar 30 2020 06:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81401 * 109.47370 * 2 1 4 4 C 1.81392 * 103.00078 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47478 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47349 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.47121 * 304.99927 * 6 5 4 8 8 C 1.53008 * 109.46918 * 185.00209 * 6 5 4 9 9 N 1.46900 * 109.47324 * 65.00151 * 6 5 4 10 10 C 1.46897 * 110.99674 * 205.00008 * 9 6 5 11 11 C 1.53005 * 109.46814 * 175.41892 * 10 9 6 12 12 C 1.50693 * 115.56441 * 321.13165 * 11 10 9 13 13 H 1.08006 * 120.00245 * 99.65489 * 12 11 10 14 14 C 1.37873 * 120.00281 * 279.65209 * 12 11 10 15 15 N 1.31518 * 119.99444 * 8.61493 * 14 12 11 16 16 Si 1.86796 * 120.00606 * 188.61534 * 14 12 11 17 17 H 1.48500 * 109.47176 * 89.99835 * 16 14 12 18 18 H 1.48501 * 109.47221 * 210.00416 * 16 14 12 19 19 H 1.48501 * 109.46848 * 330.00139 * 16 14 12 20 20 C 1.52997 * 117.49867 * 175.43678 * 11 10 9 21 21 C 1.52996 * 60.03529 * 252.50267 * 20 11 10 22 22 H 1.08999 * 109.47513 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47015 * 300.00644 * 1 2 3 24 24 H 1.09004 * 109.46860 * 60.00121 * 1 2 3 25 25 H 1.08999 * 109.47115 * 239.99844 * 2 1 3 26 26 H 1.09004 * 109.46860 * 119.99879 * 2 1 3 27 27 H 1.09001 * 109.47212 * 59.99879 * 4 3 2 28 28 H 1.09006 * 109.47306 * 300.00012 * 4 3 2 29 29 H 1.09001 * 109.46932 * 59.99788 * 5 4 3 30 30 H 1.09006 * 109.46927 * 300.00325 * 5 4 3 31 31 H 1.08992 * 109.47112 * 59.99971 * 8 6 5 32 32 H 1.08998 * 109.46763 * 180.02562 * 8 6 5 33 33 H 1.09006 * 109.46660 * 299.99872 * 8 6 5 34 34 H 1.00898 * 111.00304 * 81.04480 * 9 6 5 35 35 H 1.09003 * 109.47542 * 55.42671 * 10 9 6 36 36 H 1.09005 * 109.47426 * 295.41744 * 10 9 6 37 37 H 0.97009 * 119.99813 * 179.97438 * 15 14 12 38 38 H 1.09008 * 117.50255 * 0.02562 * 20 11 10 39 39 H 1.08997 * 117.50034 * 145.00080 * 20 11 10 40 40 H 1.09003 * 117.49466 * 107.50011 * 21 20 11 41 41 H 1.08998 * 117.50028 * 252.51661 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 0.0008 5 6 4.6065 2.8815 0.0002 6 6 6.1267 2.7090 0.0002 7 1 6.4213 2.0827 0.8423 8 6 6.7955 4.0795 0.1255 9 7 6.5473 2.0717 -1.2547 10 6 7.8229 1.3636 -1.0838 11 6 8.1703 0.6200 -2.3750 12 6 7.0089 -0.0237 -3.0874 13 1 6.5563 0.4678 -3.9361 14 6 6.5238 -1.2401 -2.6560 15 7 6.9576 -1.7581 -1.5277 16 14 5.2507 -2.1523 -3.6740 17 1 5.9378 -3.0488 -4.6381 18 1 4.3858 -2.9599 -2.7769 19 1 4.4166 -1.1733 -4.4163 20 6 9.5212 -0.0957 -2.4364 21 6 9.3002 1.1893 -3.2367 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.2405 0.9541 -0.8890 28 1 4.2398 0.9543 0.8910 29 1 4.3031 3.4336 0.8898 30 1 4.3037 3.4326 -0.8902 31 1 6.4835 4.5523 1.0566 32 1 7.8785 3.9566 0.1250 33 1 6.5009 4.7058 -0.7167 34 1 6.6062 2.7477 -2.0015 35 1 7.7349 0.6489 -0.2655 36 1 8.6099 2.0824 -0.8555 37 1 6.6161 -2.6137 -1.2239 38 1 10.1623 -0.0373 -1.5568 39 1 9.5697 -1.0324 -2.9918 40 1 9.7959 2.0936 -2.8837 41 1 9.2030 1.0981 -4.3185 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133885654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:00 Heat of formation + Delta-G solvation = 3.087771 kcal Electronic energy + Delta-G solvation = -17720.531767 eV Core-core repulsion = 15147.629516 eV Total energy + Delta-G solvation = -2572.902251 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -37.51916 -35.87601 -32.65998 -31.84026 -31.61253 -29.05234 -25.48621 -24.52170 -23.80323 -22.46964 -21.11431 -20.10790 -18.93117 -16.09402 -15.85112 -15.15331 -14.71426 -14.59317 -14.50042 -14.30748 -13.64189 -13.42345 -13.15605 -12.71017 -12.44734 -12.30151 -11.91193 -11.64427 -11.57976 -11.44678 -11.19608 -10.94405 -10.80839 -10.61714 -10.52370 -10.42847 -10.30775 -10.10303 -9.63860 -9.39534 -8.76746 -8.31175 -8.00432 -7.40064 -7.29964 -5.90909 -3.89602 2.01228 2.95880 3.34027 3.41165 3.45789 4.50400 4.90545 5.04466 5.08985 5.16112 5.37394 5.40812 5.44957 5.46104 5.56213 5.68412 5.80334 5.84093 5.87091 5.97981 6.07565 6.09689 6.17013 6.23327 6.28894 6.41874 6.52199 6.59055 6.66135 6.67407 6.75220 7.00297 7.11258 7.46299 7.50982 8.01204 8.11524 8.33712 8.60302 9.05689 9.71998 11.19656 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.014810 B = 0.007827 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.164596 B = 3576.432754 C = 5132.957698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 S -0.298 6.298 4 C -0.063 4.063 5 C -0.083 4.083 6 C 0.086 3.914 7 H 0.072 0.928 8 C -0.179 4.179 9 N -0.649 5.649 10 C 0.112 3.888 11 C 0.051 3.949 12 C -0.461 4.461 13 H 0.056 0.944 14 C 0.076 3.924 15 N -0.881 5.881 16 Si 0.878 3.122 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.274 1.274 20 C -0.166 4.166 21 C -0.218 4.218 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.332 0.668 35 H 0.070 0.930 36 H -0.009 1.009 37 H 0.254 0.746 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.693 6.523 4.705 9.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.234 4.234 3 S -0.072 6.072 4 C -0.211 4.211 5 C -0.122 4.122 6 C -0.027 4.027 7 H 0.091 0.909 8 C -0.239 4.239 9 N -0.278 5.278 10 C -0.017 4.017 11 C 0.051 3.949 12 C -0.499 4.499 13 H 0.074 0.926 14 C -0.126 4.126 15 N -0.519 5.519 16 Si 0.707 3.293 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.199 1.199 20 C -0.204 4.204 21 C -0.255 4.255 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.128 0.872 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.149 0.851 35 H 0.089 0.911 36 H 0.009 0.991 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.721 6.694 4.929 10.690 hybrid contribution 0.792 -1.070 -0.420 1.396 sum -5.929 5.624 4.509 9.333 Atomic orbital electron populations 1.21502 0.92767 1.02100 1.02803 1.23215 0.99509 0.95620 1.05095 1.86481 1.09275 1.13168 1.98253 1.23343 0.89318 1.01852 1.06621 1.21261 0.94518 0.94679 1.01743 1.21551 0.93429 0.93001 0.94724 0.90948 1.22522 1.00930 0.98847 1.01568 1.60318 1.33013 1.30648 1.03839 1.21458 0.86768 0.94146 0.99356 1.18925 0.88195 0.95651 0.92151 1.20135 1.13799 1.03000 1.12976 0.92612 1.24796 0.95923 0.97388 0.94471 1.70011 1.43890 1.18249 1.19707 0.86816 0.81957 0.80073 0.80460 1.21081 1.21638 1.19851 1.22546 1.02975 0.94679 1.00196 1.23061 1.08287 0.96189 0.97956 0.91509 0.92014 0.91848 0.89994 0.90383 0.87240 0.91030 0.92164 0.91386 0.92867 0.92851 0.92695 0.85082 0.91120 0.99109 0.93624 0.92175 0.90327 0.92107 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.92 37.16 0.37 -1.15 16 2 C -0.09 -1.22 6.66 37.16 0.25 -0.97 16 3 S -0.30 -4.69 21.74 -107.50 -2.34 -7.03 16 4 C -0.06 -1.07 5.83 37.16 0.22 -0.86 16 5 C -0.08 -1.25 4.90 -26.73 -0.13 -1.38 16 6 C 0.09 1.36 2.59 -67.71 -0.18 1.19 16 7 H 0.07 1.22 7.73 -51.93 -0.40 0.82 16 8 C -0.18 -2.41 9.16 37.16 0.34 -2.07 16 9 N -0.65 -12.42 4.98 -106.72 -0.53 -12.95 16 10 C 0.11 2.39 5.59 -3.82 -0.02 2.37 16 11 C 0.05 1.22 1.65 -155.62 -0.26 0.96 16 12 C -0.46 -12.10 8.11 -34.45 -0.28 -12.38 16 13 H 0.06 1.50 7.83 -52.48 -0.41 1.09 16 14 C 0.08 2.04 5.41 -17.82 -0.10 1.94 16 15 N -0.88 -24.36 13.20 55.43 0.73 -23.63 16 16 Si 0.88 21.13 29.55 -169.99 -5.02 16.11 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.17 -3.83 9.79 -26.74 -0.26 -4.09 16 21 C -0.22 -4.65 9.88 -26.69 -0.26 -4.91 16 22 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 26 H 0.08 1.06 8.14 -51.92 -0.42 0.63 16 27 H 0.11 2.22 7.75 -51.92 -0.40 1.82 16 28 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.74 7.54 -51.93 -0.39 0.35 16 33 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 34 H 0.33 6.17 8.52 -39.29 -0.33 5.84 16 35 H 0.07 1.69 7.94 -51.93 -0.41 1.27 16 36 H -0.01 -0.18 7.35 -51.93 -0.38 -0.56 16 37 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 39 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 40 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 41 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 LS Contribution 347.16 15.07 5.23 5.23 Total: -1.00 -26.79 347.16 -10.02 -36.81 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -7.78 Total: 6.81 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -0.31 Total: -21.35 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.20 Total: -36.58 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -4.69 SS G_CDS: -2.34 Total: -7.03 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -26.79 -10.02 -36.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133885654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.898 kcal (2) G-P(sol) polarization free energy of solvation -26.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds