Wall clock time and date at job start Mon Mar 30 2020 06:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81401 * 109.47370 * 2 1 4 4 C 1.81392 * 103.00078 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47478 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47349 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.47121 * 304.99927 * 6 5 4 8 8 C 1.53008 * 109.46918 * 185.00209 * 6 5 4 9 9 N 1.46900 * 109.47324 * 65.00151 * 6 5 4 10 10 C 1.46897 * 110.99674 * 205.00008 * 9 6 5 11 11 C 1.53005 * 109.46814 * 175.41892 * 10 9 6 12 12 C 1.50693 * 115.56441 * 321.13165 * 11 10 9 13 13 H 1.08006 * 120.00245 * 99.65489 * 12 11 10 14 14 C 1.37873 * 120.00281 * 279.65209 * 12 11 10 15 15 N 1.31518 * 119.99444 * 8.61493 * 14 12 11 16 16 Si 1.86796 * 120.00606 * 188.61534 * 14 12 11 17 17 H 1.48500 * 109.47176 * 89.99835 * 16 14 12 18 18 H 1.48501 * 109.47221 * 210.00416 * 16 14 12 19 19 H 1.48501 * 109.46848 * 330.00139 * 16 14 12 20 20 C 1.52997 * 117.49867 * 175.43678 * 11 10 9 21 21 C 1.52996 * 60.03529 * 252.50267 * 20 11 10 22 22 H 1.08999 * 109.47513 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47015 * 300.00644 * 1 2 3 24 24 H 1.09004 * 109.46860 * 60.00121 * 1 2 3 25 25 H 1.08999 * 109.47115 * 239.99844 * 2 1 3 26 26 H 1.09004 * 109.46860 * 119.99879 * 2 1 3 27 27 H 1.09001 * 109.47212 * 59.99879 * 4 3 2 28 28 H 1.09006 * 109.47306 * 300.00012 * 4 3 2 29 29 H 1.09001 * 109.46932 * 59.99788 * 5 4 3 30 30 H 1.09006 * 109.46927 * 300.00325 * 5 4 3 31 31 H 1.08992 * 109.47112 * 59.99971 * 8 6 5 32 32 H 1.08998 * 109.46763 * 180.02562 * 8 6 5 33 33 H 1.09006 * 109.46660 * 299.99872 * 8 6 5 34 34 H 1.00898 * 111.00304 * 81.04480 * 9 6 5 35 35 H 1.09003 * 109.47542 * 55.42671 * 10 9 6 36 36 H 1.09005 * 109.47426 * 295.41744 * 10 9 6 37 37 H 0.97009 * 119.99813 * 179.97438 * 15 14 12 38 38 H 1.09008 * 117.50255 * 0.02562 * 20 11 10 39 39 H 1.08997 * 117.50034 * 145.00080 * 20 11 10 40 40 H 1.09003 * 117.49466 * 107.50011 * 21 20 11 41 41 H 1.08998 * 117.50028 * 252.51661 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 0.0008 5 6 4.6065 2.8815 0.0002 6 6 6.1267 2.7090 0.0002 7 1 6.4213 2.0827 0.8423 8 6 6.7955 4.0795 0.1255 9 7 6.5473 2.0717 -1.2547 10 6 7.8229 1.3636 -1.0838 11 6 8.1703 0.6200 -2.3750 12 6 7.0089 -0.0237 -3.0874 13 1 6.5563 0.4678 -3.9361 14 6 6.5238 -1.2401 -2.6560 15 7 6.9576 -1.7581 -1.5277 16 14 5.2507 -2.1523 -3.6740 17 1 5.9378 -3.0488 -4.6381 18 1 4.3858 -2.9599 -2.7769 19 1 4.4166 -1.1733 -4.4163 20 6 9.5212 -0.0957 -2.4364 21 6 9.3002 1.1893 -3.2367 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.2405 0.9541 -0.8890 28 1 4.2398 0.9543 0.8910 29 1 4.3031 3.4336 0.8898 30 1 4.3037 3.4326 -0.8902 31 1 6.4835 4.5523 1.0566 32 1 7.8785 3.9566 0.1250 33 1 6.5009 4.7058 -0.7167 34 1 6.6062 2.7477 -2.0015 35 1 7.7349 0.6489 -0.2655 36 1 8.6099 2.0824 -0.8555 37 1 6.6161 -2.6137 -1.2239 38 1 10.1623 -0.0373 -1.5568 39 1 9.5697 -1.0324 -2.9918 40 1 9.7959 2.0936 -2.8837 41 1 9.2030 1.0981 -4.3185 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133885654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:00 Heat of formation + Delta-G solvation = -9.681515 kcal Electronic energy + Delta-G solvation = -17721.085485 eV Core-core repulsion = 15147.629516 eV Total energy + Delta-G solvation = -2573.455969 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.10231 -37.45983 -33.86681 -33.69363 -33.09088 -30.35048 -27.46688 -26.01192 -25.09359 -23.68007 -22.89588 -21.48749 -20.77179 -17.96383 -17.08186 -16.63529 -16.49707 -16.11887 -15.76596 -15.64148 -15.12981 -14.97873 -14.49920 -14.33908 -13.76162 -13.49242 -13.38024 -13.29586 -12.90691 -12.79990 -12.74307 -12.54409 -12.41876 -12.34528 -12.06707 -11.95737 -11.74214 -11.58023 -11.21526 -10.90383 -10.67726 -10.30716 -9.85280 -8.83049 -8.63274 -7.97352 -5.99191 0.78045 1.39317 1.42849 1.50232 1.67905 2.49830 3.32914 3.43737 3.63066 3.90548 3.96306 4.05636 4.17171 4.25105 4.42690 4.47118 4.49825 4.56824 4.60521 4.75484 4.77977 4.83428 4.83566 4.88086 4.92963 5.01466 5.04347 5.17142 5.17778 5.25283 5.25904 5.34605 5.36465 5.64391 5.72862 5.92651 6.46149 6.65873 6.89920 7.01954 7.63887 9.12047 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.014810 B = 0.007827 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.164596 B = 3576.432754 C = 5132.957698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 S -0.298 6.298 4 C -0.058 4.058 5 C -0.073 4.073 6 C 0.087 3.913 7 H 0.059 0.941 8 C -0.169 4.169 9 N -0.664 5.664 10 C 0.129 3.871 11 C 0.024 3.976 12 C -0.463 4.463 13 H 0.044 0.956 14 C 0.037 3.963 15 N -0.904 5.904 16 Si 0.926 3.074 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.273 1.273 20 C -0.174 4.174 21 C -0.191 4.191 22 H 0.086 0.914 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.335 0.665 35 H 0.038 0.962 36 H 0.008 0.992 37 H 0.251 0.749 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.310 7.945 4.955 11.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.236 4.236 3 S -0.072 6.072 4 C -0.206 4.206 5 C -0.112 4.112 6 C -0.025 4.025 7 H 0.077 0.923 8 C -0.228 4.228 9 N -0.293 5.293 10 C 0.000 4.000 11 C 0.024 3.976 12 C -0.501 4.501 13 H 0.062 0.938 14 C -0.163 4.163 15 N -0.543 5.543 16 Si 0.754 3.246 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.198 1.198 20 C -0.212 4.212 21 C -0.228 4.228 22 H 0.104 0.896 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.153 0.847 35 H 0.057 0.943 36 H 0.026 0.974 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.341 8.129 5.170 12.111 hybrid contribution 0.964 -1.519 -0.512 1.870 sum -6.377 6.610 4.658 10.298 Atomic orbital electron populations 1.21503 0.90376 1.03515 1.03196 1.23343 1.01530 0.94245 1.04504 1.86406 1.07919 1.14720 1.98170 1.23187 0.90729 1.02462 1.04265 1.21221 0.93707 0.93657 1.02651 1.21559 0.94076 0.94159 0.92676 0.92300 1.22394 1.00303 0.97079 1.03059 1.60196 1.32002 1.31591 1.05557 1.21115 0.88286 0.93759 0.96886 1.19077 0.87837 0.96978 0.93735 1.20303 1.14304 1.03008 1.12498 0.93780 1.25306 0.97487 0.98223 0.95235 1.70107 1.45106 1.18351 1.20772 0.86064 0.80269 0.79031 0.79250 1.20998 1.21673 1.19776 1.22471 1.03139 0.94678 1.00945 1.23048 1.06013 0.96141 0.97590 0.89564 0.91111 0.91909 0.91612 0.89977 0.91131 0.91719 0.90038 0.91434 0.90815 0.93232 0.91804 0.84683 0.94330 0.97382 0.94031 0.91133 0.92595 0.89328 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.92 71.98 0.71 -1.96 16 2 C -0.09 -2.43 6.66 71.98 0.48 -1.95 16 3 S -0.30 -9.17 21.74 -56.49 -1.23 -10.39 16 4 C -0.06 -1.98 5.83 71.98 0.42 -1.56 16 5 C -0.07 -2.13 4.90 30.59 0.15 -1.98 16 6 C 0.09 2.69 2.59 44.92 0.12 2.81 16 7 H 0.06 1.97 7.73 -2.39 -0.02 1.95 16 8 C -0.17 -4.11 9.16 71.98 0.66 -3.45 16 9 N -0.66 -25.18 4.98 -491.55 -2.45 -27.63 16 10 C 0.13 5.48 5.59 86.31 0.48 5.97 16 11 C 0.02 1.15 1.65 -52.90 -0.09 1.06 16 12 C -0.46 -24.52 8.11 25.60 0.21 -24.31 16 13 H 0.04 2.39 7.83 -2.91 -0.02 2.37 16 14 C 0.04 2.00 5.41 84.65 0.46 2.45 16 15 N -0.90 -51.09 13.20 21.45 0.28 -50.80 16 16 Si 0.93 44.01 29.55 68.60 2.03 46.04 16 17 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 18 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 19 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 20 C -0.17 -7.99 9.79 30.59 0.30 -7.69 16 21 C -0.19 -7.82 9.88 30.62 0.30 -7.52 16 22 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.07 2.96 7.75 -2.39 -0.02 2.94 16 28 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.05 1.25 7.54 -2.39 -0.02 1.23 16 33 H 0.06 1.45 8.13 -2.38 -0.02 1.43 16 34 H 0.34 12.16 8.52 -89.70 -0.76 11.39 16 35 H 0.04 1.87 7.94 -2.39 -0.02 1.85 16 36 H 0.01 0.32 7.35 -2.38 -0.02 0.30 16 37 H 0.25 13.83 8.31 -92.70 -0.77 13.06 16 38 H 0.07 3.04 8.14 -2.38 -0.02 3.02 16 39 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 40 H 0.09 3.15 8.08 -2.39 -0.02 3.13 16 41 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -57.26 347.16 3.04 -54.22 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.20 Total: 26.70 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: 4.20 Total: -38.13 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -2.16 Total: -78.43 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: -9.17 SS G_CDS: -1.23 Total: -10.39 kcal Total: -57.26 3.04 -54.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133885654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.540 kcal (2) G-P(sol) polarization free energy of solvation -57.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds