Wall clock time and date at job start Mon Mar 30 2020 06:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00094 * 2 1 4 4 H 1.48496 * 109.47214 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46798 * 299.99827 * 3 2 1 6 6 H 1.48501 * 109.47483 * 59.99694 * 3 2 1 7 7 C 1.37883 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00374 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99854 * 359.97438 * 7 2 1 10 10 S 1.81398 * 109.47034 * 180.02562 * 9 7 2 11 11 O 1.42098 * 109.47221 * 63.61341 * 10 9 7 12 12 C 1.81401 * 102.99836 * 180.02562 * 10 9 7 13 13 C 1.50701 * 109.46970 * 180.02562 * 12 10 9 14 14 C 1.38246 * 119.98821 * 90.00098 * 13 12 10 15 15 C 1.38215 * 120.01338 * 180.27925 * 14 13 12 16 16 C 1.38358 * 119.98339 * 359.46462 * 15 14 13 17 17 Cl 1.73596 * 120.00861 * 180.24067 * 16 15 14 18 18 C 1.38349 * 119.97541 * 0.55375 * 16 15 14 19 19 C 1.38212 * 119.98529 * 359.69979 * 18 16 15 20 20 H 0.97005 * 120.00193 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.47028 * 60.00314 * 9 7 2 22 22 H 1.09004 * 109.47525 * 300.00390 * 9 7 2 23 23 H 1.08991 * 109.47345 * 60.00003 * 12 10 9 24 24 H 1.09000 * 109.47152 * 299.99470 * 12 10 9 25 25 H 1.08002 * 119.98964 * 359.97438 * 14 13 12 26 26 H 1.07998 * 120.00901 * 179.70367 * 15 14 13 27 27 H 1.08000 * 120.00705 * 179.68371 * 18 16 15 28 28 H 1.08004 * 119.99523 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 16 2.4298 -3.8780 0.0029 11 8 3.1902 -3.8500 1.2030 12 6 1.3515 -5.3367 0.0034 13 6 2.1955 -6.5852 0.0051 14 6 2.5816 -7.1566 1.2033 15 6 3.3604 -8.2984 1.2054 16 6 3.7444 -8.8758 0.0081 17 17 4.7174 -10.3134 0.0101 18 6 3.3580 -8.3032 -1.1906 19 6 2.5835 -7.1585 -1.1915 20 1 -0.4851 0.8401 -0.0004 21 1 0.6240 -2.5575 -0.8881 22 1 0.6246 -2.5564 0.8919 23 1 0.7226 -5.3240 -0.8867 24 1 0.7221 -5.3229 0.8933 25 1 2.2786 -6.7079 2.1378 26 1 3.6660 -8.7420 2.1415 27 1 3.6617 -8.7506 -2.1255 28 1 2.2822 -6.7112 -2.1272 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159179918.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:07 Heat of formation + Delta-G solvation = -55.270552 kcal Electronic energy + Delta-G solvation = -14029.714712 eV Core-core repulsion = 11389.773073 eV Total energy + Delta-G solvation = -2639.941639 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.29537 -37.47426 -36.53140 -35.23195 -33.53852 -32.02310 -30.68070 -27.95737 -25.20381 -23.80531 -22.45772 -18.77787 -18.31147 -17.94103 -16.84244 -16.65194 -16.29670 -15.96969 -15.24514 -14.96211 -14.48579 -14.42640 -14.35804 -14.14900 -13.60323 -13.19145 -12.83542 -12.71218 -12.57128 -12.38228 -12.36182 -12.12828 -11.74795 -11.60208 -10.89842 -10.69432 -10.00859 -9.55150 -8.86549 -8.30929 -6.44288 -0.00229 0.32902 0.99177 1.15240 1.38368 1.40159 1.53734 2.08506 2.36407 2.69150 3.00123 3.13526 3.69791 3.81751 3.96899 4.19487 4.38294 4.56927 4.67696 4.87716 4.95794 5.02166 5.13171 5.23424 5.26204 5.54721 5.55493 5.83269 5.94020 6.69964 7.24821 8.81586 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.059650 B = 0.003914 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.290253 B = 7152.704587 C = 7253.834019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.963 3.037 4 H -0.262 1.262 5 H -0.263 1.263 6 H -0.284 1.284 7 C -0.538 4.538 8 H 0.063 0.937 9 C -0.272 4.272 10 S 1.274 4.726 11 O -0.920 6.920 12 C -0.409 4.409 13 C -0.065 4.065 14 C -0.126 4.126 15 C -0.115 4.115 16 C -0.050 4.050 17 Cl -0.070 7.070 18 C -0.104 4.104 19 C -0.097 4.097 20 H 0.267 0.733 21 H 0.082 0.918 22 H 0.001 0.999 23 H 0.163 0.837 24 H 0.078 0.922 25 H 0.111 0.889 26 H 0.140 0.860 27 H 0.165 0.835 28 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.017 -17.397 -6.934 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.189 4.189 3 Si 0.787 3.213 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.210 1.210 7 C -0.577 4.577 8 H 0.081 0.919 9 C -0.411 4.411 10 S 1.478 4.522 11 O -0.916 6.916 12 C -0.545 4.545 13 C -0.067 4.067 14 C -0.146 4.146 15 C -0.134 4.134 16 C -0.077 4.077 17 Cl -0.041 7.041 18 C -0.122 4.122 19 C -0.117 4.117 20 H 0.076 0.924 21 H 0.100 0.900 22 H 0.019 0.981 23 H 0.181 0.819 24 H 0.096 0.904 25 H 0.129 0.871 26 H 0.157 0.843 27 H 0.182 0.818 28 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.944 -17.375 -6.904 19.619 hybrid contribution -1.329 0.915 2.535 3.005 sum 4.615 -16.460 -4.370 17.644 Atomic orbital electron populations 1.70069 1.07647 1.28121 1.50196 1.25910 0.95858 1.03215 0.93956 0.85421 0.79194 0.78497 0.78208 1.18592 1.18784 1.20964 1.20939 0.93146 0.90871 1.52696 0.91887 1.25075 1.06834 1.07787 1.01395 1.69196 0.87883 0.84779 1.10378 1.92909 1.59754 1.85454 1.53459 1.26751 1.09655 1.08740 1.09305 1.19432 0.97955 0.94966 0.94299 1.21142 0.98997 0.96058 0.98373 1.21099 0.98355 0.95894 0.98016 1.21089 0.99471 0.91561 0.95564 1.98358 1.69632 1.37121 1.98973 1.21410 0.97522 0.95789 0.97475 1.21487 0.96807 0.94879 0.98482 0.92378 0.90014 0.98080 0.81940 0.90356 0.87055 0.84262 0.81768 0.80418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.87 13.29 21.45 0.28 -53.58 15 2 C 0.01 0.63 5.46 84.66 0.46 1.09 15 3 Si 0.96 43.29 29.54 68.60 2.03 45.31 15 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 15 5 H -0.26 -11.05 7.11 99.48 0.71 -10.35 15 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 7 C -0.54 -29.81 9.13 25.60 0.23 -29.57 15 8 H 0.06 3.42 7.71 -2.91 -0.02 3.40 15 9 C -0.27 -13.23 5.68 71.24 0.40 -12.83 15 10 S 1.27 47.22 13.06 -56.49 -0.74 46.49 15 11 O -0.92 -46.08 18.14 -148.98 -2.70 -48.78 15 12 C -0.41 -11.47 6.05 71.24 0.43 -11.04 15 13 C -0.07 -1.71 5.14 -19.86 -0.10 -1.81 15 14 C -0.13 -3.63 9.70 22.27 0.22 -3.41 15 15 C -0.12 -2.85 9.83 22.29 0.22 -2.63 15 16 C -0.05 -1.09 6.32 22.32 0.14 -0.94 15 17 Cl -0.07 -1.35 28.96 -2.72 -0.08 -1.43 15 18 C -0.10 -1.90 9.83 22.29 0.22 -1.68 15 19 C -0.10 -1.87 9.70 22.26 0.22 -1.66 15 20 H 0.27 14.59 8.31 -92.70 -0.77 13.82 15 21 H 0.08 3.73 8.14 -2.39 -0.02 3.71 15 22 H 0.00 0.03 8.14 -2.39 -0.02 0.01 15 23 H 0.16 3.27 8.09 -2.39 -0.02 3.25 15 24 H 0.08 2.45 8.08 -2.39 -0.02 2.43 15 25 H 0.11 3.47 8.06 -2.91 -0.02 3.44 15 26 H 0.14 3.04 8.06 -2.91 -0.02 3.01 15 27 H 0.16 2.01 8.06 -2.91 -0.02 1.99 15 28 H 0.18 2.02 8.06 -2.91 -0.02 2.00 15 Total: -1.00 -74.85 281.85 2.39 -72.46 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: 1.16 Total: 4.02 kcal Atomic # 6 Polarization: -66.92 SS G_CDS: 2.44 Total: -64.48 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.28 Total: -53.58 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -2.70 Total: -48.78 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 47.22 SS G_CDS: -0.74 Total: 46.49 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.43 kcal Total: -74.85 2.39 -72.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159179918.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.192 kcal (2) G-P(sol) polarization free energy of solvation -74.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds