Wall clock time and date at job start Mon Mar 30 2020 06:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00491 * 2 1 4 4 H 1.48499 * 109.47423 * 240.00095 * 3 2 1 5 5 H 1.48502 * 109.46892 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47398 * 119.99922 * 3 2 1 7 7 C 1.37885 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99992 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99416 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46669 * 179.97438 * 9 7 2 11 11 C 1.38607 * 120.00103 * 90.00205 * 10 9 7 12 12 N 1.29712 * 124.93585 * 354.71965 * 11 10 9 13 13 C 1.32149 * 116.85918 * 180.02562 * 12 11 10 14 14 Cl 1.73603 * 122.72282 * 179.97438 * 13 12 11 15 15 C 1.33408 * 114.55554 * 0.02562 * 13 12 11 16 16 S 1.70952 * 124.94427 * 174.72489 * 11 10 9 17 17 C 1.46503 * 120.00103 * 269.99707 * 10 9 7 18 18 C 1.53005 * 117.49496 * 13.56453 * 17 10 9 19 19 C 1.53000 * 117.49857 * 304.94269 * 17 10 9 20 20 H 0.97001 * 119.99300 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47440 * 59.99924 * 9 7 2 22 22 H 1.08996 * 109.47768 * 299.99398 * 9 7 2 23 23 H 1.08003 * 125.94942 * 180.02562 * 15 13 12 24 24 H 1.09000 * 115.54744 * 159.26682 * 17 10 9 25 25 H 1.08990 * 117.50160 * 359.97438 * 18 17 10 26 26 H 1.09001 * 117.49327 * 145.02109 * 18 17 10 27 27 H 1.09002 * 117.49667 * 214.97619 * 19 17 10 28 28 H 1.08999 * 117.49767 * 359.97438 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 7 2.2029 -3.6128 -0.0027 11 6 2.6532 -4.1407 1.1972 12 7 2.3730 -3.6634 2.3704 13 6 2.8896 -4.2942 3.4104 14 17 2.6142 -3.7864 5.0475 15 6 3.6407 -5.3522 3.1002 16 16 3.6586 -5.5152 1.3462 17 6 2.6788 -4.1685 -1.2719 18 6 2.4078 -3.3605 -2.5427 19 6 1.6253 -4.6473 -2.2728 20 1 -0.4849 0.8401 0.0004 21 1 0.6245 -2.5563 -0.8920 22 1 0.6239 -2.5576 0.8880 23 1 4.1482 -5.9972 3.8022 24 1 3.6138 -4.7264 -1.2197 25 1 1.8751 -2.4158 -2.4344 26 1 3.1646 -3.3868 -3.3267 27 1 1.8673 -5.5201 -2.8793 28 1 0.5781 -4.5493 -1.9867 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164954336.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:13 Heat of formation + Delta-G solvation = 76.515548 kcal Electronic energy + Delta-G solvation = -14828.106465 eV Core-core repulsion = 12226.172252 eV Total energy + Delta-G solvation = -2601.934213 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.029 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.26744 -37.80410 -36.12986 -33.72350 -32.43586 -28.92381 -27.49457 -24.19095 -23.27221 -22.00738 -20.56005 -19.20919 -18.08778 -16.52320 -16.17988 -15.27418 -14.94910 -14.60775 -14.29235 -13.92054 -12.87814 -12.70312 -12.27865 -11.73275 -11.61171 -11.45188 -11.07754 -10.94860 -10.76254 -10.64712 -10.60733 -10.18014 -10.15001 -9.68324 -9.16697 -8.96783 -8.65860 -8.48366 -6.92869 -6.07642 -4.14332 1.36060 1.52638 1.70165 2.70244 3.29429 3.31447 3.34486 3.38237 3.54734 4.22002 4.41240 5.10588 5.15810 5.23909 5.31641 5.38810 5.71007 5.81423 5.94200 6.13296 6.32892 6.64280 6.75597 7.27209 7.55756 7.79301 7.92016 8.13142 8.43198 8.88554 9.50058 10.98012 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.016023 B = 0.008825 C = 0.006220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.080743 B = 3171.891389 C = 4500.574360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.256 3.744 10 N -0.524 5.524 11 C 0.365 3.635 12 N -0.541 5.541 13 C 0.186 3.814 14 Cl -0.026 7.026 15 C -0.320 4.320 16 S 0.071 5.929 17 C 0.077 3.923 18 C -0.168 4.168 19 C -0.195 4.195 20 H 0.265 0.735 21 H 0.039 0.961 22 H 0.048 0.952 23 H 0.174 0.826 24 H 0.117 0.883 25 H 0.123 0.877 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.982 -11.101 -0.058 12.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.138 4.138 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.135 3.865 10 N -0.236 5.236 11 C -0.006 4.006 12 N -0.268 5.268 13 C 0.026 3.974 14 Cl 0.002 6.998 15 C -0.464 4.464 16 S 0.318 5.682 17 C -0.029 4.029 18 C -0.206 4.206 19 C -0.235 4.235 20 H 0.074 0.926 21 H 0.056 0.944 22 H 0.066 0.934 23 H 0.191 0.809 24 H 0.135 0.865 25 H 0.141 0.859 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.823 -11.046 -0.751 12.509 hybrid contribution 0.266 1.407 1.156 1.840 sum 6.089 -9.638 0.404 11.408 Atomic orbital electron populations 1.69913 1.05957 1.27244 1.50159 1.24890 0.94837 0.99097 0.94971 0.86567 0.79544 0.82702 0.78697 1.20221 1.21183 1.20163 1.21309 0.93322 0.90172 1.51313 0.92407 1.19489 0.86697 0.81474 0.98797 1.46351 1.44870 1.34274 0.98079 1.23179 0.94869 0.92896 0.89672 1.65812 1.31839 1.33125 0.96025 1.19934 0.97041 0.92581 0.87880 1.98356 1.95721 1.91480 1.14289 1.25773 1.15929 1.07653 0.97017 1.83606 1.52251 1.29865 1.02480 1.21497 0.97701 1.02584 0.81154 1.23423 1.03019 0.97438 0.96702 1.23455 0.98565 0.98523 1.02938 0.92583 0.94352 0.93403 0.80907 0.86547 0.85875 0.88514 0.88542 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 13.29 55.43 0.74 -25.03 15 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 15 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 7 C -0.52 -14.20 8.92 -34.44 -0.31 -14.51 15 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 15 9 C 0.26 6.37 4.52 -5.19 -0.02 6.34 15 10 N -0.52 -10.94 2.91 -169.78 -0.49 -11.43 15 11 C 0.37 7.50 7.73 -87.66 -0.68 6.82 15 12 N -0.54 -12.14 9.87 -12.29 -0.12 -12.26 15 13 C 0.19 3.53 7.30 -19.10 -0.14 3.39 15 14 Cl -0.03 -0.45 29.21 -51.86 -1.51 -1.96 15 15 C -0.32 -5.11 11.20 29.04 0.33 -4.78 15 16 S 0.07 1.12 21.79 -107.50 -2.34 -1.22 15 17 C 0.08 1.27 6.24 -67.93 -0.42 0.85 15 18 C -0.17 -2.65 9.72 -26.73 -0.26 -2.91 15 19 C -0.20 -2.80 10.02 -26.73 -0.27 -3.06 15 20 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 21 H 0.04 0.96 6.25 -51.93 -0.32 0.64 15 22 H 0.05 1.35 7.68 -51.93 -0.40 0.95 15 23 H 0.17 2.20 8.06 -52.48 -0.42 1.78 15 24 H 0.12 1.67 7.25 -51.93 -0.38 1.30 15 25 H 0.12 2.36 6.29 -51.93 -0.33 2.04 15 26 H 0.10 1.25 8.14 -51.93 -0.42 0.83 15 27 H 0.10 1.09 8.14 -51.93 -0.42 0.67 15 28 H 0.10 1.55 7.83 -51.93 -0.41 1.14 15 LS Contribution 274.81 15.07 4.14 4.14 Total: -1.00 -29.57 274.81 -9.13 -38.71 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -2.65 Total: -1.34 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -1.87 Total: -6.16 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.12 Total: -48.72 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.34 Total: -1.22 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.51 Total: -1.96 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.57 -9.13 -38.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164954336.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.223 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds