Wall clock time and date at job start Mon Mar 30 2020 06:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00491 * 2 1 4 4 H 1.48499 * 109.47423 * 240.00095 * 3 2 1 5 5 H 1.48502 * 109.46892 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47398 * 119.99922 * 3 2 1 7 7 C 1.37885 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99992 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99416 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46669 * 179.97438 * 9 7 2 11 11 C 1.38607 * 120.00103 * 90.00205 * 10 9 7 12 12 N 1.29712 * 124.93585 * 354.71965 * 11 10 9 13 13 C 1.32149 * 116.85918 * 180.02562 * 12 11 10 14 14 Cl 1.73603 * 122.72282 * 179.97438 * 13 12 11 15 15 C 1.33408 * 114.55554 * 0.02562 * 13 12 11 16 16 S 1.70952 * 124.94427 * 174.72489 * 11 10 9 17 17 C 1.46503 * 120.00103 * 269.99707 * 10 9 7 18 18 C 1.53005 * 117.49496 * 13.56453 * 17 10 9 19 19 C 1.53000 * 117.49857 * 304.94269 * 17 10 9 20 20 H 0.97001 * 119.99300 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47440 * 59.99924 * 9 7 2 22 22 H 1.08996 * 109.47768 * 299.99398 * 9 7 2 23 23 H 1.08003 * 125.94942 * 180.02562 * 15 13 12 24 24 H 1.09000 * 115.54744 * 159.26682 * 17 10 9 25 25 H 1.08990 * 117.50160 * 359.97438 * 18 17 10 26 26 H 1.09001 * 117.49327 * 145.02109 * 18 17 10 27 27 H 1.09002 * 117.49667 * 214.97619 * 19 17 10 28 28 H 1.08999 * 117.49767 * 359.97438 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 7 2.2029 -3.6128 -0.0027 11 6 2.6532 -4.1407 1.1972 12 7 2.3730 -3.6634 2.3704 13 6 2.8896 -4.2942 3.4104 14 17 2.6142 -3.7864 5.0475 15 6 3.6407 -5.3522 3.1002 16 16 3.6586 -5.5152 1.3462 17 6 2.6788 -4.1685 -1.2719 18 6 2.4078 -3.3605 -2.5427 19 6 1.6253 -4.6473 -2.2728 20 1 -0.4849 0.8401 0.0004 21 1 0.6245 -2.5563 -0.8920 22 1 0.6239 -2.5576 0.8880 23 1 4.1482 -5.9972 3.8022 24 1 3.6138 -4.7264 -1.2197 25 1 1.8751 -2.4158 -2.4344 26 1 3.1646 -3.3868 -3.3267 27 1 1.8673 -5.5201 -2.8793 28 1 0.5781 -4.5493 -1.9867 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164954336.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:13 Heat of formation + Delta-G solvation = 59.249523 kcal Electronic energy + Delta-G solvation = -14828.855176 eV Core-core repulsion = 12226.172252 eV Total energy + Delta-G solvation = -2602.682925 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.029 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.72616 -39.17716 -37.46715 -35.40984 -34.26278 -30.51228 -29.27773 -25.84352 -24.96983 -23.19623 -21.95264 -20.73533 -19.49305 -18.57618 -17.63712 -16.86116 -16.47073 -16.11690 -15.91764 -15.26112 -14.55967 -14.21548 -13.81439 -13.33667 -13.23911 -12.97430 -12.80125 -12.62946 -12.25683 -12.23621 -12.13377 -11.96590 -11.51399 -11.35697 -10.64798 -10.61376 -10.43056 -10.01945 -8.50939 -8.08871 -6.33287 -0.02559 0.16417 0.33359 1.35110 1.36634 1.39320 1.46290 1.86181 2.11649 2.39310 2.99656 3.09510 3.80275 3.90837 4.07485 4.12468 4.40364 4.61225 4.77552 4.83048 5.03250 5.07315 5.24663 5.38169 5.63335 5.95846 6.07871 6.22227 6.74453 7.02520 7.35042 8.85513 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.016023 B = 0.008825 C = 0.006220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.080743 B = 3171.891389 C = 4500.574360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.014 3.986 3 Si 0.958 3.042 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.047 0.953 9 C 0.281 3.719 10 N -0.541 5.541 11 C 0.322 3.678 12 N -0.594 5.594 13 C 0.148 3.852 14 Cl -0.022 7.022 15 C -0.298 4.298 16 S 0.171 5.829 17 C 0.059 3.941 18 C -0.174 4.174 19 C -0.173 4.173 20 H 0.266 0.734 21 H 0.027 0.973 22 H 0.003 0.997 23 H 0.211 0.789 24 H 0.146 0.854 25 H 0.080 0.920 26 H 0.130 0.870 27 H 0.139 0.861 28 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.169 -12.867 -0.698 15.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.185 4.185 3 Si 0.783 3.217 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.564 4.564 8 H 0.065 0.935 9 C 0.158 3.842 10 N -0.254 5.254 11 C -0.048 4.048 12 N -0.322 5.322 13 C -0.011 4.011 14 Cl 0.006 6.994 15 C -0.442 4.442 16 S 0.418 5.582 17 C -0.045 4.045 18 C -0.212 4.212 19 C -0.212 4.212 20 H 0.075 0.925 21 H 0.045 0.955 22 H 0.021 0.979 23 H 0.228 0.772 24 H 0.163 0.837 25 H 0.099 0.901 26 H 0.148 0.852 27 H 0.157 0.843 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.038 -12.848 -1.391 15.218 hybrid contribution -0.359 1.815 1.422 2.333 sum 7.678 -11.033 0.031 13.442 Atomic orbital electron populations 1.70027 1.07337 1.28011 1.51295 1.25692 0.95624 1.02451 0.94729 0.85612 0.78417 0.78865 0.78789 1.18637 1.20488 1.20743 1.21501 0.92812 0.91547 1.50555 0.93470 1.18765 0.86914 0.82610 0.95900 1.46136 1.45208 1.34178 0.99907 1.23502 0.96911 0.95403 0.89015 1.65740 1.33374 1.35506 0.97624 1.20117 0.99045 0.94157 0.87782 1.98343 1.95855 1.91650 1.13580 1.26410 1.13123 1.06026 0.98600 1.83141 1.48665 1.25390 1.00993 1.21913 0.99526 1.03456 0.79648 1.23378 1.04046 0.96244 0.97532 1.23504 0.96921 0.99102 1.01692 0.92528 0.95508 0.97912 0.77207 0.83715 0.90113 0.85181 0.84297 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.38 13.29 21.45 0.28 -55.10 15 2 C 0.01 0.81 5.46 84.66 0.46 1.27 15 3 Si 0.96 45.04 29.54 68.60 2.03 47.07 15 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 15 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 6 H -0.28 -13.40 7.11 99.48 0.71 -12.69 15 7 C -0.53 -29.62 8.92 25.60 0.23 -29.39 15 8 H 0.05 2.70 7.81 -2.91 -0.02 2.68 15 9 C 0.28 14.72 4.52 85.63 0.39 15.11 15 10 N -0.54 -22.89 2.91 -691.05 -2.01 -24.90 15 11 C 0.32 13.10 7.73 179.31 1.39 14.48 15 12 N -0.59 -27.07 9.87 -192.81 -1.90 -28.97 15 13 C 0.15 5.50 7.30 83.55 0.61 6.11 15 14 Cl -0.02 -0.75 29.21 -2.72 -0.08 -0.83 15 15 C -0.30 -8.62 11.20 66.73 0.75 -7.87 15 16 S 0.17 4.80 21.79 -56.49 -1.23 3.57 15 17 C 0.06 1.87 6.24 44.99 0.28 2.15 15 18 C -0.17 -5.33 9.72 30.60 0.30 -5.03 15 19 C -0.17 -4.65 10.02 30.60 0.31 -4.34 15 20 H 0.27 15.05 8.31 -92.71 -0.77 14.28 15 21 H 0.03 1.44 6.25 -2.39 -0.01 1.43 15 22 H 0.00 0.17 7.68 -2.39 -0.02 0.15 15 23 H 0.21 4.35 8.06 -2.91 -0.02 4.33 15 24 H 0.15 3.67 7.25 -2.39 -0.02 3.65 15 25 H 0.08 3.21 6.29 -2.39 -0.02 3.20 15 26 H 0.13 3.03 8.14 -2.39 -0.02 3.01 15 27 H 0.14 2.55 8.14 -2.39 -0.02 2.53 15 28 H 0.08 2.43 7.83 -2.39 -0.02 2.42 15 Total: -1.00 -67.60 274.81 2.97 -64.63 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: 1.18 Total: 2.05 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 4.71 Total: -7.52 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -3.63 Total: -108.97 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -1.23 Total: 3.57 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -67.60 2.97 -64.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164954336.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.882 kcal (2) G-P(sol) polarization free energy of solvation -67.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds