Wall clock time and date at job start Mon Mar 30 2020 06:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81399 * 103.00247 * 2 1 4 4 H 1.09001 * 109.47121 * 55.00230 * 3 2 1 5 5 C 1.52999 * 109.47038 * 295.00129 * 3 2 1 6 6 C 1.52994 * 109.46955 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.47414 * 59.99830 * 6 5 3 8 8 C 1.53001 * 109.47478 * 300.00278 * 7 6 5 9 9 C 1.52994 * 109.47025 * 59.99484 * 8 7 6 10 10 H 1.09003 * 109.47340 * 180.02562 * 9 8 7 11 11 N 1.46906 * 109.47113 * 60.00412 * 9 8 7 12 12 C 1.46901 * 110.99793 * 84.99675 * 11 9 8 13 13 C 1.53000 * 109.46769 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47060 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46756 * 59.99920 * 19 17 15 21 21 H 1.48490 * 109.47381 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47117 * 300.00527 * 19 17 15 23 23 H 1.09004 * 109.47328 * 59.99868 * 1 2 3 24 24 H 1.08995 * 109.47387 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46897 * 300.00166 * 1 2 3 26 26 H 1.09005 * 109.47349 * 60.00006 * 5 3 2 27 27 H 1.09001 * 109.47247 * 300.00024 * 5 3 2 28 28 H 1.09001 * 109.47003 * 299.99978 * 6 5 3 29 29 H 1.09003 * 109.47340 * 180.02562 * 6 5 3 30 30 H 1.08999 * 109.47487 * 179.97438 * 7 6 5 31 31 H 1.09001 * 109.46915 * 60.00094 * 7 6 5 32 32 H 1.08996 * 109.46434 * 299.99786 * 8 7 6 33 33 H 1.08995 * 109.47166 * 180.02562 * 8 7 6 34 34 H 1.00898 * 110.99995 * 321.04597 * 11 9 8 35 35 H 1.09001 * 109.46874 * 60.00179 * 12 11 9 36 36 H 1.08992 * 109.47407 * 300.00197 * 12 11 9 37 37 H 1.09002 * 109.47398 * 300.00295 * 13 12 11 38 38 H 1.09001 * 109.47194 * 60.00475 * 13 12 11 39 39 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 40 40 H 1.08998 * 109.47533 * 59.99948 * 14 13 12 41 41 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 2.0876 3.8921 -1.3076 7 6 3.6026 4.0652 -1.1822 8 6 4.0819 3.4311 0.1251 9 6 3.7371 1.9405 0.1254 10 1 4.0782 1.4888 1.0569 11 7 4.4005 1.2843 -1.0092 12 6 5.7765 0.9017 -0.6650 13 6 6.4330 0.2223 -1.8684 14 6 7.8658 -0.1768 -1.5098 15 6 8.5128 -0.8454 -2.6952 16 1 7.9577 -0.9726 -3.6129 17 6 9.8137 -1.2939 -2.6088 18 7 10.4899 -1.1385 -1.4915 19 14 10.6155 -2.1233 -4.0780 20 1 10.6358 -1.1829 -5.2271 21 1 12.0065 -2.5094 -3.7303 22 1 9.8415 -3.3364 -4.4448 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.6635 2.2779 -1.3969 27 1 2.2354 1.9149 -2.1492 28 1 1.5954 4.3791 -0.4657 29 1 1.7458 4.3440 -2.2388 30 1 3.8483 5.1272 -1.1828 31 1 4.0948 3.5783 -2.0240 32 1 3.5897 3.9181 0.9669 33 1 5.1611 3.5549 0.2147 34 1 4.3832 1.8733 -1.8282 35 1 5.7614 0.2111 0.1782 36 1 6.3445 1.7920 -0.3953 37 1 5.8648 -0.6681 -2.1377 38 1 6.4481 0.9126 -2.7119 39 1 8.4342 0.7134 -1.2402 40 1 7.8505 -0.8672 -0.6665 41 1 11.4053 -1.4536 -1.4307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167263987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:07 Heat of formation + Delta-G solvation = -33.454872 kcal Electronic energy + Delta-G solvation = -17441.024327 eV Core-core repulsion = 14866.537468 eV Total energy + Delta-G solvation = -2574.486859 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.34321 -35.21787 -33.17237 -31.29850 -31.12749 -28.93156 -28.79931 -25.72335 -22.89956 -22.59043 -22.33776 -20.06132 -19.04832 -16.74820 -16.20920 -15.66449 -15.22984 -14.72310 -14.54145 -14.33073 -14.01972 -13.63432 -13.53818 -13.33333 -12.92598 -12.44958 -12.22897 -12.07566 -12.02398 -11.61530 -11.45515 -11.33055 -10.84687 -10.72135 -10.58404 -10.51380 -10.39272 -10.31042 -9.64569 -9.55496 -9.25413 -8.99795 -8.28259 -8.07693 -7.44599 -5.93789 -3.95516 1.76453 2.71860 3.37927 3.41721 3.44810 4.32848 4.51462 4.54600 4.62240 4.81268 4.95708 5.01178 5.06153 5.09292 5.23594 5.28362 5.40033 5.41909 5.46590 5.58646 5.61811 5.77908 5.84450 5.91816 5.96918 5.99988 6.01936 6.14442 6.25392 6.41508 6.81449 6.85733 7.22236 7.42057 7.72010 7.75676 7.91529 8.07216 8.50794 9.11567 9.68071 11.17699 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.026877 B = 0.004085 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.532343 B = 6852.796857 C = 7347.707388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.215 6.215 3 C -0.042 4.042 4 H 0.080 0.920 5 C -0.114 4.114 6 C -0.116 4.116 7 C -0.122 4.122 8 C -0.146 4.146 9 C 0.105 3.895 10 H 0.084 0.916 11 N -0.675 5.675 12 C 0.061 3.939 13 C -0.105 4.105 14 C 0.023 3.977 15 C -0.518 4.518 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.072 0.928 24 H 0.096 0.904 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.338 0.662 35 H 0.066 0.934 36 H 0.022 0.978 37 H 0.057 0.943 38 H 0.042 0.958 39 H 0.012 0.988 40 H 0.016 0.984 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.988 10.102 3.744 22.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.014 5.986 3 C -0.171 4.171 4 H 0.098 0.902 5 C -0.154 4.154 6 C -0.155 4.155 7 C -0.160 4.160 8 C -0.186 4.186 9 C -0.007 4.007 10 H 0.102 0.898 11 N -0.307 5.307 12 C -0.068 4.068 13 C -0.143 4.143 14 C -0.015 4.015 15 C -0.556 4.556 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.091 0.909 24 H 0.114 0.886 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.158 0.842 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.031 0.969 40 H 0.034 0.966 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.412 8.499 3.983 21.562 hybrid contribution 0.101 1.478 -0.685 1.632 sum -19.311 9.976 3.298 21.985 Atomic orbital electron populations 1.23457 0.97311 1.05930 1.04106 1.87441 1.03337 1.10149 1.97661 1.23255 0.99335 0.94241 1.00285 0.90211 1.21852 1.00437 0.95372 0.97703 1.21556 0.96169 0.96095 1.01674 1.21545 0.95797 1.00653 0.98026 1.22193 1.01705 0.96502 0.98239 1.21252 0.91033 0.92306 0.96084 0.89801 1.60680 1.18654 1.46053 1.05292 1.22135 0.86252 0.98284 1.00081 1.21599 0.98519 0.99165 0.95060 1.19053 0.89303 0.96283 0.96851 1.21229 0.97607 1.37874 0.98881 0.92755 1.25024 0.97431 0.96185 0.95860 1.69963 1.10636 1.47355 1.25745 0.86664 0.78325 0.80008 0.83040 1.20316 1.21348 1.20212 0.90926 0.88551 0.91370 0.92420 0.89710 0.92275 0.91758 0.91767 0.91473 0.91620 0.91145 0.84169 0.91532 0.95934 0.92452 0.93884 0.96936 0.96598 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 10.45 101.05 1.06 -0.21 16 2 S -0.21 -2.75 21.37 -107.50 -2.30 -5.05 16 3 C -0.04 -0.46 2.46 -26.73 -0.07 -0.52 16 4 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 5 C -0.11 -1.11 4.87 -26.73 -0.13 -1.24 16 6 C -0.12 -0.98 5.92 -26.74 -0.16 -1.14 16 7 C -0.12 -1.16 5.67 -26.73 -0.15 -1.31 16 8 C -0.15 -1.52 5.52 -26.73 -0.15 -1.67 16 9 C 0.11 1.29 2.30 -67.71 -0.16 1.13 16 10 H 0.08 1.12 7.80 -51.93 -0.41 0.72 16 11 N -0.67 -9.87 5.30 -106.72 -0.57 -10.43 16 12 C 0.06 1.07 5.48 -3.82 -0.02 1.05 16 13 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 14 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 15 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 16 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.54 13.29 55.43 0.74 -26.81 16 19 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H 0.07 0.60 7.14 -51.92 -0.37 0.23 16 24 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 26 H 0.06 0.51 6.92 -51.93 -0.36 0.15 16 27 H 0.08 0.96 7.21 -51.93 -0.37 0.59 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.70 6.26 -51.93 -0.32 0.37 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.81 7.46 -51.93 -0.39 0.42 16 34 H 0.34 4.71 5.56 -39.29 -0.22 4.49 16 35 H 0.07 1.24 8.06 -51.93 -0.42 0.82 16 36 H 0.02 0.39 7.44 -51.93 -0.39 0.01 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 327.90 15.07 4.94 4.94 Total: -1.00 -30.45 327.90 -10.11 -40.56 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -7.44 Total: -0.64 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -0.47 Total: -19.67 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.17 Total: -37.24 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: -2.75 SS G_CDS: -2.30 Total: -5.05 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.45 -10.11 -40.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167263987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.106 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds