Wall clock time and date at job start Mon Mar 30 2020 06:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81399 * 103.00247 * 2 1 4 4 H 1.09001 * 109.47121 * 55.00230 * 3 2 1 5 5 C 1.52999 * 109.47038 * 295.00129 * 3 2 1 6 6 C 1.52994 * 109.46955 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.47414 * 59.99830 * 6 5 3 8 8 C 1.53001 * 109.47478 * 300.00278 * 7 6 5 9 9 C 1.52994 * 109.47025 * 59.99484 * 8 7 6 10 10 H 1.09003 * 109.47340 * 180.02562 * 9 8 7 11 11 N 1.46906 * 109.47113 * 60.00412 * 9 8 7 12 12 C 1.46901 * 110.99793 * 84.99675 * 11 9 8 13 13 C 1.53000 * 109.46769 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47060 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46756 * 59.99920 * 19 17 15 21 21 H 1.48490 * 109.47381 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47117 * 300.00527 * 19 17 15 23 23 H 1.09004 * 109.47328 * 59.99868 * 1 2 3 24 24 H 1.08995 * 109.47387 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46897 * 300.00166 * 1 2 3 26 26 H 1.09005 * 109.47349 * 60.00006 * 5 3 2 27 27 H 1.09001 * 109.47247 * 300.00024 * 5 3 2 28 28 H 1.09001 * 109.47003 * 299.99978 * 6 5 3 29 29 H 1.09003 * 109.47340 * 180.02562 * 6 5 3 30 30 H 1.08999 * 109.47487 * 179.97438 * 7 6 5 31 31 H 1.09001 * 109.46915 * 60.00094 * 7 6 5 32 32 H 1.08996 * 109.46434 * 299.99786 * 8 7 6 33 33 H 1.08995 * 109.47166 * 180.02562 * 8 7 6 34 34 H 1.00898 * 110.99995 * 321.04597 * 11 9 8 35 35 H 1.09001 * 109.46874 * 60.00179 * 12 11 9 36 36 H 1.08992 * 109.47407 * 300.00197 * 12 11 9 37 37 H 1.09002 * 109.47398 * 300.00295 * 13 12 11 38 38 H 1.09001 * 109.47194 * 60.00475 * 13 12 11 39 39 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 40 40 H 1.08998 * 109.47533 * 59.99948 * 14 13 12 41 41 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 2.0876 3.8921 -1.3076 7 6 3.6026 4.0652 -1.1822 8 6 4.0819 3.4311 0.1251 9 6 3.7371 1.9405 0.1254 10 1 4.0782 1.4888 1.0569 11 7 4.4005 1.2843 -1.0092 12 6 5.7765 0.9017 -0.6650 13 6 6.4330 0.2223 -1.8684 14 6 7.8658 -0.1768 -1.5098 15 6 8.5128 -0.8454 -2.6952 16 1 7.9577 -0.9726 -3.6129 17 6 9.8137 -1.2939 -2.6088 18 7 10.4899 -1.1385 -1.4915 19 14 10.6155 -2.1233 -4.0780 20 1 10.6358 -1.1829 -5.2271 21 1 12.0065 -2.5094 -3.7303 22 1 9.8415 -3.3364 -4.4448 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.6635 2.2779 -1.3969 27 1 2.2354 1.9149 -2.1492 28 1 1.5954 4.3791 -0.4657 29 1 1.7458 4.3440 -2.2388 30 1 3.8483 5.1272 -1.1828 31 1 4.0948 3.5783 -2.0240 32 1 3.5897 3.9181 0.9669 33 1 5.1611 3.5549 0.2147 34 1 4.3832 1.8733 -1.8282 35 1 5.7614 0.2111 0.1782 36 1 6.3445 1.7920 -0.3953 37 1 5.8648 -0.6681 -2.1377 38 1 6.4481 0.9126 -2.7119 39 1 8.4342 0.7134 -1.2402 40 1 7.8505 -0.8672 -0.6665 41 1 11.4053 -1.4536 -1.4307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167263987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:07 Heat of formation + Delta-G solvation = -50.539718 kcal Electronic energy + Delta-G solvation = -17441.765182 eV Core-core repulsion = 14866.537468 eV Total energy + Delta-G solvation = -2575.227713 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.29087 -36.74673 -35.01972 -32.95817 -31.93574 -30.26311 -29.53294 -27.56286 -24.38732 -23.64100 -23.31704 -21.87663 -19.96882 -18.49805 -17.63782 -16.81797 -16.54545 -16.20327 -15.74419 -15.51614 -15.24314 -14.64005 -14.43486 -14.25407 -14.07417 -13.88706 -13.68315 -13.38875 -13.03528 -12.97135 -12.77527 -12.68137 -12.45467 -12.26145 -12.23727 -11.67130 -11.44179 -11.38966 -11.32765 -11.20713 -11.02291 -10.54391 -10.43482 -9.26980 -8.44463 -8.19374 -6.30573 0.90803 1.39947 1.43672 1.51563 1.88837 2.41700 3.13498 3.22068 3.67860 3.76490 4.00633 4.13804 4.20193 4.26733 4.34958 4.38957 4.40825 4.43221 4.51146 4.55888 4.68455 4.73847 4.86982 4.89284 4.94409 5.05574 5.12980 5.15297 5.19954 5.24940 5.25777 5.33144 5.49946 5.53246 5.75999 5.86268 6.10333 6.28448 6.54931 6.85878 7.38510 8.92495 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.026877 B = 0.004085 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.532343 B = 6852.796857 C = 7347.707388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.297 6.297 3 C -0.024 4.024 4 H 0.097 0.903 5 C -0.110 4.110 6 C -0.109 4.109 7 C -0.122 4.122 8 C -0.140 4.140 9 C 0.104 3.896 10 H 0.068 0.932 11 N -0.675 5.675 12 C 0.077 3.923 13 C -0.089 4.089 14 C 0.027 3.973 15 C -0.544 4.544 16 H 0.059 0.941 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.265 1.265 21 H -0.282 1.282 22 H -0.268 1.268 23 H 0.083 0.917 24 H 0.101 0.899 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.343 0.657 35 H 0.052 0.948 36 H 0.024 0.976 37 H 0.048 0.952 38 H 0.050 0.950 39 H -0.009 1.009 40 H -0.012 1.012 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.616 11.189 2.813 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.069 6.069 3 C -0.153 4.153 4 H 0.115 0.885 5 C -0.149 4.149 6 C -0.148 4.148 7 C -0.160 4.160 8 C -0.181 4.181 9 C -0.008 4.008 10 H 0.086 0.914 11 N -0.308 5.308 12 C -0.052 4.052 13 C -0.127 4.127 14 C -0.011 4.011 15 C -0.582 4.582 16 H 0.077 0.923 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.790 3.210 20 H -0.190 1.190 21 H -0.207 1.207 22 H -0.193 1.193 23 H 0.102 0.898 24 H 0.120 0.880 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.165 0.835 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.010 0.990 40 H 0.006 0.994 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.064 9.599 3.050 23.348 hybrid contribution 0.566 1.144 -0.342 1.321 sum -20.498 10.743 2.708 23.300 Atomic orbital electron populations 1.23429 0.93220 1.06739 1.05357 1.87714 1.08060 1.13220 1.97888 1.23190 0.97999 0.92365 1.01723 0.88518 1.21810 1.01016 0.96028 0.96064 1.21527 0.95260 0.95047 1.02984 1.21552 0.96593 1.01129 0.96686 1.22137 1.01098 0.95107 0.99762 1.21297 0.91925 0.93297 0.94257 0.91408 1.60583 1.16430 1.47226 1.06515 1.21773 0.87982 0.97677 0.97736 1.21333 0.95429 0.99202 0.96752 1.18950 0.92208 0.94538 0.95380 1.21664 0.98386 1.38454 0.99673 0.92326 1.25998 0.98066 0.96686 0.99097 1.70099 1.11100 1.48205 1.28047 0.85487 0.77263 0.79083 0.79140 1.19025 1.20683 1.19278 0.89799 0.88023 0.89857 0.91060 0.91584 0.90786 0.90548 0.90462 0.92761 0.89756 0.92531 0.83545 0.92908 0.95824 0.93340 0.93166 0.99041 0.99366 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 10.45 113.37 1.19 -0.74 16 2 S -0.30 -7.49 21.37 -56.49 -1.21 -8.69 16 3 C -0.02 -0.48 2.46 30.59 0.08 -0.41 16 4 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 5 C -0.11 -1.89 4.87 30.59 0.15 -1.74 16 6 C -0.11 -1.50 5.92 30.59 0.18 -1.32 16 7 C -0.12 -2.04 5.67 30.59 0.17 -1.86 16 8 C -0.14 -2.72 5.52 30.59 0.17 -2.55 16 9 C 0.10 2.47 2.30 44.91 0.10 2.58 16 10 H 0.07 1.84 7.80 -2.39 -0.02 1.82 16 11 N -0.67 -19.81 5.30 -491.57 -2.61 -22.42 16 12 C 0.08 2.82 5.48 86.30 0.47 3.29 16 13 C -0.09 -3.90 5.41 30.59 0.17 -3.74 16 14 C 0.03 1.49 4.97 29.85 0.15 1.63 16 15 C -0.54 -32.21 9.11 25.60 0.23 -31.98 16 16 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 17 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 18 N -0.93 -58.40 13.29 21.45 0.28 -58.12 16 19 Si 0.97 45.42 29.54 68.60 2.03 47.45 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H 0.08 1.17 7.14 -2.39 -0.02 1.15 16 24 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.05 6.92 -2.38 -0.02 1.03 16 27 H 0.07 1.41 7.21 -2.39 -0.02 1.39 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.05 6.26 -2.39 -0.01 1.04 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.06 1.26 7.46 -2.39 -0.02 1.24 16 34 H 0.34 9.46 5.56 -89.70 -0.50 8.96 16 35 H 0.05 2.05 8.06 -2.39 -0.02 2.03 16 36 H 0.02 0.85 7.44 -2.39 -0.02 0.83 16 37 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 39 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 41 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -66.63 327.90 2.49 -64.14 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.48 Total: 14.07 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 3.52 Total: -36.43 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -2.32 Total: -80.54 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 16 Polarization: -7.49 SS G_CDS: -1.21 Total: -8.69 kcal Total: -66.63 2.49 -64.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167263987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.602 kcal (2) G-P(sol) polarization free energy of solvation -66.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds