Wall clock time and date at job start Mon Mar 30 2020 06:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81408 * 103.00053 * 2 1 4 4 H 1.09000 * 109.46602 * 305.00307 * 3 2 1 5 5 C 1.52996 * 109.46890 * 65.00163 * 3 2 1 6 6 C 1.53002 * 109.46972 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.46817 * 299.99733 * 6 5 3 8 8 C 1.53006 * 109.47127 * 60.00361 * 7 6 5 9 9 C 1.52997 * 109.47117 * 185.00029 * 3 2 1 10 10 H 1.08993 * 109.47194 * 300.00436 * 9 3 2 11 11 N 1.46906 * 109.46770 * 60.00156 * 9 3 2 12 12 C 1.46903 * 110.99546 * 204.99862 * 11 9 3 13 13 C 1.53004 * 109.46932 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.46982 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.47019 * 179.97438 * 14 13 12 16 16 H 1.08008 * 120.00370 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00268 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99454 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00336 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47336 * 59.99859 * 19 17 15 21 21 H 1.48503 * 109.47305 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47237 * 299.99954 * 19 17 15 23 23 H 1.09001 * 109.47656 * 59.99940 * 1 2 3 24 24 H 1.09000 * 109.47483 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46982 * 300.00087 * 1 2 3 26 26 H 1.08996 * 109.47452 * 59.99858 * 5 3 2 27 27 H 1.09000 * 109.47054 * 300.00017 * 5 3 2 28 28 H 1.09002 * 109.47070 * 179.97438 * 6 5 3 29 29 H 1.08996 * 109.47407 * 59.99513 * 6 5 3 30 30 H 1.09001 * 109.47502 * 300.00518 * 7 6 5 31 31 H 1.09001 * 109.47289 * 180.02562 * 7 6 5 32 32 H 1.08993 * 109.46955 * 60.00011 * 8 7 6 33 33 H 1.09000 * 109.47050 * 179.97438 * 8 7 6 34 34 H 1.00899 * 111.00380 * 81.04861 * 11 9 3 35 35 H 1.09000 * 109.47394 * 299.99933 * 12 11 9 36 36 H 1.08998 * 109.47373 * 60.00125 * 12 11 9 37 37 H 1.08996 * 109.46946 * 299.99566 * 13 12 11 38 38 H 1.08998 * 109.47134 * 59.99801 * 13 12 11 39 39 H 1.08996 * 109.46869 * 299.99544 * 14 13 12 40 40 H 1.08998 * 109.47405 * 59.99897 * 14 13 12 41 41 H 0.97002 * 119.99678 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2541 -0.8418 5 6 1.7428 2.4016 1.3074 6 6 2.0864 3.8925 1.3071 7 6 3.6012 4.0667 1.1811 8 6 4.0805 3.4326 -0.1263 9 6 3.7369 1.9412 -0.1257 10 1 4.2295 1.4546 0.7160 11 7 4.1970 1.3324 -1.3810 12 6 5.6102 0.9417 -1.2896 13 6 6.0523 0.3136 -2.6128 14 6 7.5239 -0.0939 -2.5174 15 6 7.9592 -0.7131 -3.8205 16 1 7.2566 -0.8063 -4.6354 17 6 9.2547 -1.1598 -3.9728 18 7 10.1107 -1.0449 -2.9809 19 14 9.7945 -1.9267 -5.5882 20 1 9.6235 -0.9411 -6.6857 21 1 11.2228 -2.3224 -5.4956 22 1 8.9660 -3.1271 -5.8676 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 2.2353 1.9150 2.1491 27 1 0.6635 2.2778 1.3969 28 1 1.7446 4.3443 2.2383 29 1 1.5935 4.3789 0.4653 30 1 4.0942 3.5803 2.0228 31 1 3.8461 5.1288 1.1814 32 1 3.5876 3.9190 -0.9680 33 1 5.1596 3.5571 -0.2163 34 1 4.0432 1.9530 -2.1616 35 1 6.2183 1.8229 -1.0850 36 1 5.7358 0.2186 -0.4838 37 1 5.4443 -0.5675 -2.8178 38 1 5.9267 1.0371 -3.4184 39 1 8.1322 0.7870 -2.3123 40 1 7.6491 -0.8175 -1.7120 41 1 11.0220 -1.3595 -3.0879 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167264101.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:10 Heat of formation + Delta-G solvation = -37.630073 kcal Electronic energy + Delta-G solvation = -17213.350037 eV Core-core repulsion = 14638.682128 eV Total energy + Delta-G solvation = -2574.667909 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.05357 -35.59011 -33.35156 -31.38219 -31.16482 -28.80762 -28.66187 -25.67084 -23.00360 -22.60855 -21.55426 -20.46289 -19.73255 -16.65867 -16.21484 -15.49190 -15.10735 -14.67585 -14.48245 -14.37701 -14.20901 -13.62225 -13.51797 -13.35857 -13.08410 -12.79893 -12.20424 -12.02864 -11.62516 -11.52290 -11.51439 -11.29309 -10.96896 -10.81721 -10.72914 -10.55083 -10.50539 -10.34956 -9.66904 -9.58601 -9.24970 -8.99868 -8.28373 -8.08322 -7.42345 -5.93890 -3.95621 1.76232 2.70659 3.37925 3.41666 3.44792 4.19681 4.47507 4.51901 4.70450 4.80500 4.94726 4.96190 5.05191 5.09424 5.19596 5.24076 5.28408 5.41816 5.50111 5.55622 5.65716 5.77337 5.84464 5.85921 5.89403 5.90725 5.96747 6.10766 6.17328 6.40720 6.81086 6.85082 7.21937 7.40481 7.69604 7.75361 7.91294 8.07098 8.50679 9.11448 9.67953 11.17619 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.028835 B = 0.003860 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.802205 B = 7252.429135 C = 7949.291829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.218 6.218 3 C -0.042 4.042 4 H 0.081 0.919 5 C -0.114 4.114 6 C -0.116 4.116 7 C -0.117 4.117 8 C -0.145 4.145 9 C 0.107 3.893 10 H 0.084 0.916 11 N -0.677 5.677 12 C 0.062 3.938 13 C -0.106 4.106 14 C 0.023 3.977 15 C -0.518 4.518 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.071 0.929 24 H 0.096 0.904 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.337 0.663 35 H 0.023 0.977 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.012 0.988 40 H 0.016 0.984 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.900 9.859 9.650 23.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.011 5.989 3 C -0.172 4.172 4 H 0.100 0.900 5 C -0.154 4.154 6 C -0.155 4.155 7 C -0.155 4.155 8 C -0.186 4.186 9 C -0.005 4.005 10 H 0.102 0.898 11 N -0.306 5.306 12 C -0.066 4.066 13 C -0.144 4.144 14 C -0.015 4.015 15 C -0.556 4.556 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.090 0.910 24 H 0.115 0.885 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.154 0.846 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.031 0.969 40 H 0.034 0.966 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.281 8.232 9.823 22.326 hybrid contribution -0.041 1.506 -0.949 1.780 sum -18.322 9.738 8.874 22.567 Atomic orbital electron populations 1.23434 0.97001 1.05963 1.04132 1.87357 1.03766 1.10118 1.97638 1.23233 0.99590 0.94316 1.00013 0.90011 1.21898 1.00742 0.95737 0.97050 1.21560 0.96402 0.95803 1.01777 1.21499 0.95596 1.00574 0.97856 1.22297 1.01730 0.96305 0.98237 1.21298 0.91946 0.92576 0.94657 0.89826 1.60631 1.20875 1.45588 1.03472 1.22128 0.85548 0.98358 1.00564 1.21605 0.99693 0.99419 0.93658 1.19055 0.89092 0.96283 0.97078 1.21233 0.95885 1.39248 0.99254 0.92741 1.25025 0.96822 0.96121 0.96544 1.69962 1.04809 1.47512 1.31413 0.86662 0.77460 0.79779 0.84123 1.20302 1.21342 1.20213 0.90992 0.88527 0.91238 0.90684 0.91993 0.91758 0.92050 0.91700 0.91911 0.91722 0.91151 0.84564 0.95916 0.91554 0.92435 0.93805 0.96921 0.96599 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 10.45 101.05 1.06 -0.20 16 2 S -0.22 -2.81 21.38 -107.50 -2.30 -5.11 16 3 C -0.04 -0.46 2.35 -26.73 -0.06 -0.52 16 4 H 0.08 0.90 8.14 -51.92 -0.42 0.47 16 5 C -0.11 -1.01 5.11 -26.73 -0.14 -1.15 16 6 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 7 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 8 C -0.14 -1.52 5.17 -26.70 -0.14 -1.65 16 9 C 0.11 1.32 1.91 -67.69 -0.13 1.19 16 10 H 0.08 1.15 7.80 -51.93 -0.40 0.74 16 11 N -0.68 -10.04 5.79 -106.70 -0.62 -10.66 16 12 C 0.06 1.11 5.48 -3.82 -0.02 1.09 16 13 C -0.11 -2.27 5.41 -26.73 -0.14 -2.41 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 16 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 19 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 24 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 25 H 0.07 0.54 7.14 -51.92 -0.37 0.17 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.50 6.92 -51.93 -0.36 0.14 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 33 H 0.07 0.81 7.46 -51.93 -0.39 0.42 16 34 H 0.34 4.71 8.47 -39.29 -0.33 4.37 16 35 H 0.02 0.40 7.44 -51.93 -0.39 0.01 16 36 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 333.75 15.07 5.03 5.03 Total: -1.00 -30.63 333.75 -10.31 -40.94 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.70 Total: -1.17 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -0.44 Total: -19.33 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.12 Total: -37.50 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -2.30 Total: -5.11 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.63 -10.31 -40.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167264101.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.313 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds