Wall clock time and date at job start Mon Mar 30 2020 06:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81408 * 103.00053 * 2 1 4 4 H 1.09000 * 109.46602 * 305.00307 * 3 2 1 5 5 C 1.52996 * 109.46890 * 65.00163 * 3 2 1 6 6 C 1.53002 * 109.46972 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.46817 * 299.99733 * 6 5 3 8 8 C 1.53006 * 109.47127 * 60.00361 * 7 6 5 9 9 C 1.52997 * 109.47117 * 185.00029 * 3 2 1 10 10 H 1.08993 * 109.47194 * 300.00436 * 9 3 2 11 11 N 1.46906 * 109.46770 * 60.00156 * 9 3 2 12 12 C 1.46903 * 110.99546 * 204.99862 * 11 9 3 13 13 C 1.53004 * 109.46932 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.46982 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.47019 * 179.97438 * 14 13 12 16 16 H 1.08008 * 120.00370 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00268 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99454 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00336 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47336 * 59.99859 * 19 17 15 21 21 H 1.48503 * 109.47305 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47237 * 299.99954 * 19 17 15 23 23 H 1.09001 * 109.47656 * 59.99940 * 1 2 3 24 24 H 1.09000 * 109.47483 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46982 * 300.00087 * 1 2 3 26 26 H 1.08996 * 109.47452 * 59.99858 * 5 3 2 27 27 H 1.09000 * 109.47054 * 300.00017 * 5 3 2 28 28 H 1.09002 * 109.47070 * 179.97438 * 6 5 3 29 29 H 1.08996 * 109.47407 * 59.99513 * 6 5 3 30 30 H 1.09001 * 109.47502 * 300.00518 * 7 6 5 31 31 H 1.09001 * 109.47289 * 180.02562 * 7 6 5 32 32 H 1.08993 * 109.46955 * 60.00011 * 8 7 6 33 33 H 1.09000 * 109.47050 * 179.97438 * 8 7 6 34 34 H 1.00899 * 111.00380 * 81.04861 * 11 9 3 35 35 H 1.09000 * 109.47394 * 299.99933 * 12 11 9 36 36 H 1.08998 * 109.47373 * 60.00125 * 12 11 9 37 37 H 1.08996 * 109.46946 * 299.99566 * 13 12 11 38 38 H 1.08998 * 109.47134 * 59.99801 * 13 12 11 39 39 H 1.08996 * 109.46869 * 299.99544 * 14 13 12 40 40 H 1.08998 * 109.47405 * 59.99897 * 14 13 12 41 41 H 0.97002 * 119.99678 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2541 -0.8418 5 6 1.7428 2.4016 1.3074 6 6 2.0864 3.8925 1.3071 7 6 3.6012 4.0667 1.1811 8 6 4.0805 3.4326 -0.1263 9 6 3.7369 1.9412 -0.1257 10 1 4.2295 1.4546 0.7160 11 7 4.1970 1.3324 -1.3810 12 6 5.6102 0.9417 -1.2896 13 6 6.0523 0.3136 -2.6128 14 6 7.5239 -0.0939 -2.5174 15 6 7.9592 -0.7131 -3.8205 16 1 7.2566 -0.8063 -4.6354 17 6 9.2547 -1.1598 -3.9728 18 7 10.1107 -1.0449 -2.9809 19 14 9.7945 -1.9267 -5.5882 20 1 9.6235 -0.9411 -6.6857 21 1 11.2228 -2.3224 -5.4956 22 1 8.9660 -3.1271 -5.8676 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 2.2353 1.9150 2.1491 27 1 0.6635 2.2778 1.3969 28 1 1.7446 4.3443 2.2383 29 1 1.5935 4.3789 0.4653 30 1 4.0942 3.5803 2.0228 31 1 3.8461 5.1288 1.1814 32 1 3.5876 3.9190 -0.9680 33 1 5.1596 3.5571 -0.2163 34 1 4.0432 1.9530 -2.1616 35 1 6.2183 1.8229 -1.0850 36 1 5.7358 0.2186 -0.4838 37 1 5.4443 -0.5675 -2.8178 38 1 5.9267 1.0371 -3.4184 39 1 8.1322 0.7870 -2.3123 40 1 7.6491 -0.8175 -1.7120 41 1 11.0220 -1.3595 -3.0879 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167264101.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:09 Heat of formation + Delta-G solvation = -55.211322 kcal Electronic energy + Delta-G solvation = -17214.112417 eV Core-core repulsion = 14638.682128 eV Total energy + Delta-G solvation = -2575.430289 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.98279 -36.99878 -35.24114 -33.13935 -31.95086 -30.03114 -29.54038 -27.44790 -24.45249 -23.66691 -22.61801 -22.01600 -20.83403 -18.48087 -17.58330 -16.61309 -16.58212 -16.16557 -15.71598 -15.45985 -15.15574 -14.75328 -14.43171 -14.26049 -14.11249 -14.03012 -13.89663 -13.34734 -13.23523 -12.77546 -12.70120 -12.48457 -12.36729 -12.26807 -12.15843 -11.83936 -11.56621 -11.48742 -11.39251 -11.27966 -11.00978 -10.54746 -10.49395 -9.28406 -8.43436 -8.19697 -6.30967 0.89660 1.39799 1.43597 1.51453 1.86798 2.41479 3.12123 3.13171 3.64384 3.87373 3.98454 4.12628 4.17434 4.26600 4.32967 4.38307 4.39292 4.40295 4.44581 4.50002 4.70765 4.79200 4.83144 4.91315 4.96459 5.02772 5.11185 5.12887 5.16084 5.22455 5.26000 5.28954 5.45628 5.52284 5.75455 5.85891 6.07519 6.27655 6.51725 6.85499 7.38130 8.92202 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.028835 B = 0.003860 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.802205 B = 7252.429135 C = 7949.291829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.300 6.300 3 C -0.023 4.023 4 H 0.087 0.913 5 C -0.109 4.109 6 C -0.111 4.111 7 C -0.115 4.115 8 C -0.140 4.140 9 C 0.108 3.892 10 H 0.065 0.935 11 N -0.679 5.679 12 C 0.080 3.920 13 C -0.090 4.090 14 C 0.026 3.974 15 C -0.544 4.544 16 H 0.059 0.941 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.265 1.265 21 H -0.281 1.281 22 H -0.268 1.268 23 H 0.080 0.920 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.343 0.657 35 H 0.024 0.976 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.052 0.948 39 H -0.008 1.008 40 H -0.012 1.012 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.640 10.945 9.083 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.072 6.072 3 C -0.152 4.152 4 H 0.105 0.895 5 C -0.149 4.149 6 C -0.150 4.150 7 C -0.154 4.154 8 C -0.180 4.180 9 C -0.003 4.003 10 H 0.083 0.917 11 N -0.309 5.309 12 C -0.049 4.049 13 C -0.128 4.128 14 C -0.011 4.011 15 C -0.582 4.582 16 H 0.077 0.923 17 C -0.199 4.199 18 N -0.574 5.574 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.207 1.207 22 H -0.193 1.193 23 H 0.099 0.901 24 H 0.121 0.879 25 H 0.105 0.895 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.162 0.838 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.010 0.990 40 H 0.006 0.994 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.045 9.333 9.261 23.972 hybrid contribution 0.474 1.167 -0.729 1.455 sum -19.571 10.500 8.532 23.792 Atomic orbital electron populations 1.23413 0.92917 1.06796 1.05373 1.87627 1.08481 1.13174 1.97869 1.23159 0.98147 0.92400 1.01524 0.89490 1.21872 1.01471 0.96277 0.95276 1.21544 0.95482 0.94866 1.03084 1.21501 0.96416 1.01066 0.96380 1.22230 1.01036 0.94889 0.99894 1.21325 0.92947 0.93536 0.92535 0.91682 1.60534 1.18488 1.46757 1.05086 1.21755 0.87586 0.97798 0.97809 1.21342 0.96041 0.99412 0.95962 1.18956 0.92201 0.94518 0.95454 1.21670 0.96550 1.39820 1.00199 0.92287 1.26005 0.96823 0.96441 1.00612 1.70098 1.05272 1.48301 1.33777 0.85482 0.77151 0.79073 0.79234 1.19002 1.20677 1.19271 0.90144 0.87950 0.89473 0.91499 0.90505 0.90035 0.91176 0.92225 0.90594 0.90702 0.92540 0.83791 0.95746 0.93051 0.93321 0.92972 0.99009 0.99393 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 10.45 113.37 1.18 -0.73 16 2 S -0.30 -7.64 21.38 -56.49 -1.21 -8.85 16 3 C -0.02 -0.48 2.35 30.59 0.07 -0.40 16 4 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 5 C -0.11 -1.69 5.11 30.59 0.16 -1.54 16 6 C -0.11 -1.39 5.92 30.59 0.18 -1.21 16 7 C -0.12 -1.77 5.92 30.60 0.18 -1.59 16 8 C -0.14 -2.75 5.17 30.61 0.16 -2.60 16 9 C 0.11 2.61 1.91 44.93 0.09 2.70 16 10 H 0.06 1.83 7.80 -2.39 -0.02 1.81 16 11 N -0.68 -20.13 5.79 -491.48 -2.84 -22.98 16 12 C 0.08 2.91 5.48 86.30 0.47 3.38 16 13 C -0.09 -3.92 5.41 30.60 0.17 -3.76 16 14 C 0.03 1.46 4.97 29.85 0.15 1.61 16 15 C -0.54 -32.29 9.11 25.60 0.23 -32.05 16 16 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 17 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 18 N -0.93 -58.45 13.29 21.45 0.28 -58.16 16 19 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.09 1.12 7.14 -2.39 -0.02 1.11 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.08 0.99 6.92 -2.39 -0.02 0.98 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.33 8.13 -2.39 -0.02 1.31 16 33 H 0.06 1.27 7.46 -2.39 -0.02 1.26 16 34 H 0.34 9.34 8.47 -89.69 -0.76 8.58 16 35 H 0.02 0.88 7.44 -2.39 -0.02 0.86 16 36 H 0.05 2.02 8.05 -2.39 -0.02 2.00 16 37 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 39 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 41 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -66.98 333.75 1.97 -65.01 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.21 Total: 13.31 kcal Atomic # 6 Polarization: -39.31 SS G_CDS: 3.50 Total: -35.81 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -2.56 Total: -81.14 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 16 Polarization: -7.64 SS G_CDS: -1.21 Total: -8.85 kcal Total: -66.98 1.97 -65.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167264101.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.803 kcal (2) G-P(sol) polarization free energy of solvation -66.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds