Wall clock time and date at job start Mon Mar 30 2020 06:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81400 * 102.99816 * 2 1 4 4 H 1.08994 * 109.47126 * 305.00450 * 3 2 1 5 5 C 1.53007 * 109.46967 * 64.99914 * 3 2 1 6 6 C 1.52997 * 109.47091 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47179 * 300.00345 * 6 5 3 8 8 C 1.52997 * 109.47436 * 59.99808 * 7 6 5 9 9 C 1.52993 * 109.47090 * 184.99773 * 3 2 1 10 10 H 1.08997 * 109.47132 * 60.00600 * 9 3 2 11 11 N 1.46900 * 109.47556 * 300.00294 * 9 3 2 12 12 C 1.46894 * 111.00559 * 154.99999 * 11 9 3 13 13 C 1.52997 * 109.47515 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46735 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99611 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00327 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46725 * 60.00093 * 19 17 15 21 21 H 1.48505 * 109.46988 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47116 * 300.00069 * 19 17 15 23 23 H 1.08994 * 109.47152 * 59.99903 * 1 2 3 24 24 H 1.09003 * 109.46723 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47022 * 299.99657 * 1 2 3 26 26 H 1.08999 * 109.47229 * 60.00349 * 5 3 2 27 27 H 1.09000 * 109.47246 * 300.00207 * 5 3 2 28 28 H 1.08997 * 109.47283 * 180.02562 * 6 5 3 29 29 H 1.09002 * 109.47224 * 59.99880 * 6 5 3 30 30 H 1.09002 * 109.46663 * 299.99879 * 7 6 5 31 31 H 1.09001 * 109.47156 * 180.02562 * 7 6 5 32 32 H 1.08994 * 109.47396 * 180.02562 * 8 7 6 33 33 H 1.08999 * 109.47181 * 59.99833 * 8 7 6 34 34 H 1.00899 * 110.99900 * 31.04051 * 11 9 3 35 35 H 1.09002 * 109.47104 * 59.99767 * 12 11 9 36 36 H 1.08998 * 109.46828 * 300.00600 * 12 11 9 37 37 H 1.09002 * 109.47153 * 59.99762 * 13 12 11 38 38 H 1.09001 * 109.46832 * 299.99953 * 13 12 11 39 39 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 40 40 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 41 41 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 -0.8417 5 6 1.7427 2.4016 1.3074 6 6 2.0874 3.8922 1.3077 7 6 3.6024 4.0654 1.1822 8 6 4.0817 3.4314 -0.1251 9 6 3.7369 1.9412 -0.1257 10 1 4.0783 1.4896 -1.0570 11 7 4.4008 1.2854 1.0088 12 6 5.7768 0.9034 0.6645 13 6 6.4339 0.2244 1.8678 14 6 7.8673 -0.1730 1.5092 15 6 8.5143 -0.8423 2.6944 16 1 7.9589 -0.9710 3.6116 17 6 9.8154 -1.2904 2.6075 18 7 10.4916 -1.1341 1.4904 19 14 10.6177 -2.1194 4.0767 20 1 9.8440 -3.3328 4.4438 21 1 12.0085 -2.5063 3.7283 22 1 10.6380 -1.1790 5.2257 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 2.2353 1.9150 2.1492 27 1 0.6634 2.2778 1.3970 28 1 1.7463 4.3438 2.2392 29 1 1.5951 4.3791 0.4659 30 1 4.0946 3.5785 2.0241 31 1 3.8480 5.1274 1.1829 32 1 5.1610 3.5544 -0.2142 33 1 3.5894 3.9182 -0.9669 34 1 3.8719 0.4863 1.3246 35 1 6.3444 1.7939 0.3946 36 1 5.7619 0.2127 -0.1787 37 1 5.8662 -0.6662 2.1373 38 1 6.4488 0.9148 2.7111 39 1 7.8528 -0.8632 0.6658 40 1 8.4347 0.7178 1.2400 41 1 11.4068 -1.4496 1.4292 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167264320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:15 Heat of formation + Delta-G solvation = -35.973363 kcal Electronic energy + Delta-G solvation = -17436.224820 eV Core-core repulsion = 14861.628752 eV Total energy + Delta-G solvation = -2574.596069 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.08845 -35.27578 -33.19819 -31.31562 -31.07728 -29.01155 -28.83313 -25.71674 -22.93814 -22.52876 -22.01145 -20.04274 -19.05674 -16.69708 -16.26482 -15.79432 -15.42128 -14.72083 -14.41919 -14.36266 -13.93934 -13.69185 -13.60246 -13.21095 -12.78575 -12.45300 -12.35715 -12.16443 -11.90996 -11.49447 -11.40653 -11.32331 -10.84572 -10.63597 -10.58396 -10.50972 -10.44936 -10.14922 -9.77924 -9.59519 -9.25695 -8.99384 -8.28040 -8.10785 -7.77460 -5.93436 -3.95209 1.50554 2.40151 3.38170 3.41865 3.44937 4.31199 4.49409 4.52272 4.75219 4.87803 4.90469 4.94583 5.08210 5.21909 5.29247 5.33684 5.40224 5.42245 5.49371 5.63980 5.76624 5.83517 5.91962 5.99448 6.09407 6.15444 6.17918 6.25394 6.44027 6.54547 6.80984 6.86769 7.22383 7.42615 7.73839 7.76171 7.91865 8.07507 8.51059 9.11857 9.68346 11.18050 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.026914 B = 0.004085 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.120032 B = 6852.416839 C = 7347.599508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.264 6.264 3 C -0.052 4.052 4 H 0.086 0.914 5 C -0.108 4.108 6 C -0.111 4.111 7 C -0.113 4.113 8 C -0.102 4.102 9 C 0.106 3.894 10 H 0.049 0.951 11 N -0.680 5.680 12 C 0.060 3.940 13 C -0.105 4.105 14 C 0.023 3.977 15 C -0.518 4.518 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.073 0.927 24 H 0.099 0.901 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.345 0.655 35 H 0.066 0.934 36 H 0.023 0.977 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.013 0.987 40 H 0.015 0.985 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.775 8.750 -4.040 22.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.035 6.035 3 C -0.181 4.181 4 H 0.104 0.896 5 C -0.147 4.147 6 C -0.151 4.151 7 C -0.151 4.151 8 C -0.142 4.142 9 C -0.005 4.005 10 H 0.067 0.933 11 N -0.314 5.314 12 C -0.069 4.069 13 C -0.143 4.143 14 C -0.015 4.015 15 C -0.556 4.556 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.092 0.908 24 H 0.118 0.882 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.165 0.835 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.031 0.969 40 H 0.033 0.967 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.762 8.365 -3.849 21.802 hybrid contribution -0.520 -0.287 0.038 0.595 sum -20.282 8.078 -3.811 22.162 Atomic orbital electron populations 1.23376 0.94576 1.06306 1.04693 1.87070 1.07052 1.11639 1.97734 1.23473 0.99965 0.93023 1.01598 0.89556 1.21780 0.99736 0.96294 0.96902 1.21503 0.97092 0.95252 1.01228 1.21423 0.94954 0.99541 0.99137 1.21514 1.01487 0.93552 0.97644 1.21247 0.89265 0.96123 0.93877 0.93308 1.60701 1.03757 1.33347 1.33615 1.22158 0.87825 0.98742 0.98164 1.21599 0.98449 0.98397 0.95891 1.19056 0.89390 0.96320 0.96730 1.21231 0.97625 1.37824 0.98920 0.92745 1.25023 0.97417 0.96200 0.95850 1.69957 1.10649 1.47323 1.25763 0.86667 0.78322 0.79964 0.83095 1.20280 1.21348 1.20245 0.90786 0.88238 0.90453 0.89501 0.92770 0.91937 0.92793 0.89852 0.92763 0.91199 0.92458 0.83455 0.91592 0.95824 0.93678 0.92647 0.96854 0.96654 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 10.45 101.05 1.06 0.08 16 2 S -0.26 -3.10 20.27 -107.50 -2.18 -5.27 16 3 C -0.05 -0.56 2.39 -26.73 -0.06 -0.62 16 4 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 5 C -0.11 -1.07 4.95 -26.73 -0.13 -1.20 16 6 C -0.11 -1.03 5.92 -26.73 -0.16 -1.19 16 7 C -0.11 -1.22 5.77 -26.73 -0.15 -1.38 16 8 C -0.10 -1.17 5.53 -26.76 -0.15 -1.32 16 9 C 0.11 1.35 2.30 -67.74 -0.16 1.19 16 10 H 0.05 0.68 7.80 -51.93 -0.40 0.27 16 11 N -0.68 -10.20 4.82 -106.76 -0.51 -10.72 16 12 C 0.06 1.07 5.48 -3.83 -0.02 1.05 16 13 C -0.11 -2.27 5.41 -26.73 -0.14 -2.41 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 16 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 19 Si 0.89 22.15 29.54 -169.99 -5.02 17.12 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 25 H 0.08 0.56 7.14 -51.93 -0.37 0.19 16 26 H 0.09 1.01 7.48 -51.93 -0.39 0.62 16 27 H 0.05 0.47 6.92 -51.93 -0.36 0.11 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.07 7.60 -51.93 -0.39 0.68 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.88 7.45 -51.93 -0.39 0.49 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.34 5.31 6.72 -39.29 -0.26 5.05 16 35 H 0.07 1.19 7.43 -51.93 -0.39 0.81 16 36 H 0.02 0.44 8.05 -51.93 -0.42 0.02 16 37 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -30.15 329.19 -10.05 -40.21 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -7.56 Total: -0.26 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -0.47 Total: -19.19 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.22 Total: -37.56 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.18 Total: -5.27 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.15 -10.05 -40.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167264320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.235 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds