Wall clock time and date at job start Mon Mar 30 2020 06:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81400 * 102.99816 * 2 1 4 4 H 1.08994 * 109.47126 * 305.00450 * 3 2 1 5 5 C 1.53007 * 109.46967 * 64.99914 * 3 2 1 6 6 C 1.52997 * 109.47091 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47179 * 300.00345 * 6 5 3 8 8 C 1.52997 * 109.47436 * 59.99808 * 7 6 5 9 9 C 1.52993 * 109.47090 * 184.99773 * 3 2 1 10 10 H 1.08997 * 109.47132 * 60.00600 * 9 3 2 11 11 N 1.46900 * 109.47556 * 300.00294 * 9 3 2 12 12 C 1.46894 * 111.00559 * 154.99999 * 11 9 3 13 13 C 1.52997 * 109.47515 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46735 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99611 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00327 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46725 * 60.00093 * 19 17 15 21 21 H 1.48505 * 109.46988 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47116 * 300.00069 * 19 17 15 23 23 H 1.08994 * 109.47152 * 59.99903 * 1 2 3 24 24 H 1.09003 * 109.46723 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47022 * 299.99657 * 1 2 3 26 26 H 1.08999 * 109.47229 * 60.00349 * 5 3 2 27 27 H 1.09000 * 109.47246 * 300.00207 * 5 3 2 28 28 H 1.08997 * 109.47283 * 180.02562 * 6 5 3 29 29 H 1.09002 * 109.47224 * 59.99880 * 6 5 3 30 30 H 1.09002 * 109.46663 * 299.99879 * 7 6 5 31 31 H 1.09001 * 109.47156 * 180.02562 * 7 6 5 32 32 H 1.08994 * 109.47396 * 180.02562 * 8 7 6 33 33 H 1.08999 * 109.47181 * 59.99833 * 8 7 6 34 34 H 1.00899 * 110.99900 * 31.04051 * 11 9 3 35 35 H 1.09002 * 109.47104 * 59.99767 * 12 11 9 36 36 H 1.08998 * 109.46828 * 300.00600 * 12 11 9 37 37 H 1.09002 * 109.47153 * 59.99762 * 13 12 11 38 38 H 1.09001 * 109.46832 * 299.99953 * 13 12 11 39 39 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 40 40 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 41 41 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 -0.8417 5 6 1.7427 2.4016 1.3074 6 6 2.0874 3.8922 1.3077 7 6 3.6024 4.0654 1.1822 8 6 4.0817 3.4314 -0.1251 9 6 3.7369 1.9412 -0.1257 10 1 4.0783 1.4896 -1.0570 11 7 4.4008 1.2854 1.0088 12 6 5.7768 0.9034 0.6645 13 6 6.4339 0.2244 1.8678 14 6 7.8673 -0.1730 1.5092 15 6 8.5143 -0.8423 2.6944 16 1 7.9589 -0.9710 3.6116 17 6 9.8154 -1.2904 2.6075 18 7 10.4916 -1.1341 1.4904 19 14 10.6177 -2.1194 4.0767 20 1 9.8440 -3.3328 4.4438 21 1 12.0085 -2.5063 3.7283 22 1 10.6380 -1.1790 5.2257 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 2.2353 1.9150 2.1492 27 1 0.6634 2.2778 1.3970 28 1 1.7463 4.3438 2.2392 29 1 1.5951 4.3791 0.4659 30 1 4.0946 3.5785 2.0241 31 1 3.8480 5.1274 1.1829 32 1 5.1610 3.5544 -0.2142 33 1 3.5894 3.9182 -0.9669 34 1 3.8719 0.4863 1.3246 35 1 6.3444 1.7939 0.3946 36 1 5.7619 0.2127 -0.1787 37 1 5.8662 -0.6662 2.1373 38 1 6.4488 0.9148 2.7111 39 1 7.8528 -0.8632 0.6658 40 1 8.4347 0.7178 1.2400 41 1 11.4068 -1.4496 1.4292 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167264320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:15 Heat of formation + Delta-G solvation = -52.626341 kcal Electronic energy + Delta-G solvation = -17436.946948 eV Core-core repulsion = 14861.628752 eV Total energy + Delta-G solvation = -2575.318196 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.07777 -36.80963 -35.07563 -33.00622 -31.94467 -30.23173 -29.62719 -27.55792 -24.44381 -23.65831 -23.01258 -21.87862 -20.02392 -18.48429 -17.59027 -17.02979 -16.57115 -16.39439 -15.69192 -15.62445 -15.05317 -14.61813 -14.43769 -14.27917 -14.06277 -13.87210 -13.60097 -13.45563 -13.10712 -13.01324 -12.73909 -12.67887 -12.44295 -12.22583 -12.16257 -11.69752 -11.45230 -11.43627 -11.35744 -11.13719 -10.97082 -10.60180 -10.54728 -9.34858 -8.70179 -8.19542 -6.30900 0.70386 1.39884 1.43680 1.51561 1.63981 2.41568 3.13273 3.17730 3.58781 3.82380 4.02925 4.22790 4.26665 4.29416 4.33327 4.35220 4.35988 4.47754 4.51471 4.56598 4.71421 4.78645 4.86067 4.95576 4.96431 5.01912 5.14734 5.23652 5.25912 5.29122 5.35765 5.41380 5.51524 5.68461 5.74486 5.85400 6.07564 6.27495 6.46959 6.85366 7.38192 8.92364 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.026914 B = 0.004085 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.120032 B = 6852.416839 C = 7347.599508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 S -0.332 6.332 3 C -0.035 4.035 4 H 0.104 0.896 5 C -0.104 4.104 6 C -0.106 4.106 7 C -0.112 4.112 8 C -0.101 4.101 9 C 0.103 3.897 10 H 0.035 0.965 11 N -0.674 5.674 12 C 0.075 3.925 13 C -0.089 4.089 14 C 0.027 3.973 15 C -0.544 4.544 16 H 0.059 0.941 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.266 1.266 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.343 0.657 35 H 0.063 0.937 36 H 0.013 0.987 37 H 0.044 0.956 38 H 0.054 0.946 39 H -0.013 1.013 40 H -0.008 1.008 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.652 9.425 -3.302 24.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 S -0.103 6.103 3 C -0.164 4.164 4 H 0.122 0.878 5 C -0.143 4.143 6 C -0.145 4.145 7 C -0.149 4.149 8 C -0.141 4.141 9 C -0.008 4.008 10 H 0.053 0.947 11 N -0.307 5.307 12 C -0.054 4.054 13 C -0.127 4.127 14 C -0.011 4.011 15 C -0.582 4.582 16 H 0.077 0.923 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.191 1.191 23 H 0.107 0.893 24 H 0.125 0.875 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.164 0.836 35 H 0.082 0.918 36 H 0.031 0.969 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.006 0.994 40 H 0.011 0.989 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.662 9.050 -3.110 23.682 hybrid contribution 0.030 -0.490 -0.242 0.547 sum -21.633 8.561 -3.352 23.505 Atomic orbital electron populations 1.23409 0.90520 1.07258 1.05975 1.87335 1.11603 1.13503 1.97898 1.23376 0.98168 0.92031 1.02820 0.87820 1.21745 1.00628 0.96473 0.95435 1.21482 0.95703 0.94799 1.02549 1.21391 0.96160 0.99810 0.97560 1.21523 1.00754 0.92740 0.99045 1.21333 0.90788 0.96511 0.92120 0.94724 1.60658 1.02293 1.33052 1.34729 1.21835 0.89619 0.97956 0.96026 1.21337 0.95586 0.98578 0.97211 1.18952 0.92226 0.94541 0.95356 1.21661 0.98433 1.38418 0.99695 0.92285 1.26002 0.98040 0.96694 0.99109 1.70094 1.11119 1.48158 1.28080 0.85482 0.77273 0.79061 0.79117 1.19210 1.20672 1.19057 0.89317 0.87494 0.89256 0.91567 0.90876 0.90952 0.90981 0.92383 0.91627 0.92905 0.90202 0.83597 0.91820 0.96899 0.93713 0.92678 0.99440 0.98940 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 10.45 113.37 1.19 -0.23 16 2 S -0.33 -7.49 20.27 -56.49 -1.15 -8.64 16 3 C -0.04 -0.70 2.39 30.59 0.07 -0.63 16 4 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 5 C -0.10 -1.82 4.95 30.60 0.15 -1.67 16 6 C -0.11 -1.66 5.92 30.59 0.18 -1.48 16 7 C -0.11 -2.24 5.77 30.59 0.18 -2.07 16 8 C -0.10 -2.20 5.53 30.58 0.17 -2.03 16 9 C 0.10 2.57 2.30 44.90 0.10 2.68 16 10 H 0.03 0.97 7.80 -2.39 -0.02 0.95 16 11 N -0.67 -20.44 4.82 -491.68 -2.37 -22.82 16 12 C 0.07 2.79 5.48 86.30 0.47 3.26 16 13 C -0.09 -3.95 5.41 30.59 0.17 -3.78 16 14 C 0.03 1.49 4.97 29.85 0.15 1.64 16 15 C -0.54 -32.32 9.11 25.60 0.23 -32.09 16 16 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 17 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 18 N -0.93 -58.52 13.29 21.45 0.28 -58.24 16 19 Si 0.97 45.48 29.54 68.60 2.03 47.50 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.09 1.02 7.14 -2.39 -0.02 1.00 16 26 H 0.07 1.47 7.48 -2.39 -0.02 1.45 16 27 H 0.07 1.03 6.92 -2.39 -0.02 1.01 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.47 7.60 -2.39 -0.02 1.45 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 1.32 7.45 -2.39 -0.02 1.30 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.34 10.72 6.72 -89.70 -0.60 10.12 16 35 H 0.06 2.39 7.43 -2.39 -0.02 2.37 16 36 H 0.01 0.50 8.05 -2.39 -0.02 0.48 16 37 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 39 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 40 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 41 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -65.99 329.19 2.69 -63.30 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.37 Total: 14.87 kcal Atomic # 6 Polarization: -39.50 SS G_CDS: 3.52 Total: -35.98 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -2.09 Total: -81.05 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 16 Polarization: -7.49 SS G_CDS: -1.15 Total: -8.64 kcal Total: -65.99 2.69 -63.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167264320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.674 kcal (2) G-P(sol) polarization free energy of solvation -65.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds