Wall clock time and date at job start Mon Mar 30 2020 07:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47241 * 2 1 4 4 H 1.09000 * 109.46955 * 55.00117 * 3 2 1 5 5 C 1.50704 * 109.47224 * 175.00377 * 3 2 1 6 6 H 1.07998 * 119.99806 * 120.00025 * 5 3 2 7 7 C 1.37876 * 119.99865 * 300.00310 * 5 3 2 8 8 N 1.31512 * 119.99912 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 119.99968 * 359.97438 * 7 5 3 10 10 H 1.48509 * 109.47158 * 90.00384 * 9 7 5 11 11 H 1.48503 * 109.47252 * 210.00186 * 9 7 5 12 12 H 1.48505 * 109.47321 * 330.00533 * 9 7 5 13 13 O 1.42905 * 109.46996 * 295.00233 * 3 2 1 14 14 C 1.34921 * 116.99780 * 89.99969 * 13 3 2 15 15 O 1.21643 * 119.99894 * 0.02562 * 14 13 3 16 16 C 1.46332 * 119.99642 * 179.97438 * 14 13 3 17 17 C 1.36710 * 125.98233 * 180.02562 * 16 14 13 18 18 C 1.40189 * 106.73429 * 179.97438 * 17 16 14 19 19 C 1.35416 * 107.12744 * 359.97438 * 18 17 16 20 20 Cl 1.73601 * 125.62552 * 180.02562 * 19 18 17 21 21 O 1.33934 * 108.74752 * 359.77547 * 19 18 17 22 22 H 1.08998 * 109.47215 * 59.99685 * 1 2 3 23 23 H 1.08999 * 109.47060 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46631 * 300.00017 * 1 2 3 25 25 H 1.09009 * 109.46740 * 240.00421 * 2 1 3 26 26 H 1.08998 * 109.47215 * 120.00315 * 2 1 3 27 27 H 0.97002 * 119.99922 * 179.97438 * 8 7 5 28 28 H 1.08004 * 126.63540 * 359.96174 * 17 16 14 29 29 H 1.08000 * 126.43797 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4443 0.1237 6 1 4.1472 1.8889 -0.6524 7 6 4.1434 0.8783 1.2278 8 7 5.4541 0.8803 1.3360 9 14 3.0965 0.1099 2.5705 10 1 2.8746 -1.3262 2.2644 11 1 3.7944 0.2357 3.8753 12 1 1.7882 0.8092 2.6394 13 8 1.6620 2.0814 -1.2211 14 6 0.4727 2.7184 -1.2363 15 8 -0.2235 2.7308 -0.2389 16 6 0.0209 3.3953 -2.4524 17 6 -1.1556 4.0750 -2.6035 18 6 -1.1761 4.5591 -3.9190 19 6 -0.0244 4.1598 -4.5088 20 17 0.4445 4.5002 -6.1453 21 8 0.6957 3.4636 -3.6197 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 5.8772 0.4824 2.1130 28 1 -1.9214 4.2123 -1.8544 29 1 -1.9623 5.1418 -4.3760 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188056107.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:12 Heat of formation + Delta-G solvation = -66.826774 kcal Electronic energy + Delta-G solvation = -17032.119030 eV Core-core repulsion = 13948.923405 eV Total energy + Delta-G solvation = -3083.195625 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.049 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.88894 -39.92865 -37.29041 -36.38530 -33.71160 -33.36485 -31.97777 -30.04117 -27.87786 -24.27215 -22.72935 -22.14705 -21.07785 -20.01831 -18.60633 -17.22132 -16.86617 -16.61414 -16.09330 -15.56363 -14.61933 -13.72464 -13.64183 -13.49247 -13.25574 -12.99040 -12.63903 -12.34960 -12.03200 -11.93312 -11.66897 -11.58574 -11.31052 -10.80092 -10.44778 -10.31868 -10.06158 -9.70082 -9.61293 -9.13274 -8.79345 -8.67963 -6.25800 -4.29051 0.74872 0.86380 1.97641 2.80461 3.09834 3.16260 3.28714 3.30452 3.57318 4.23301 4.53868 5.01001 5.04306 5.17767 5.37246 5.56380 5.75164 5.85366 5.90811 5.95148 6.32498 6.49479 6.51964 6.59600 6.65430 6.92826 7.22025 7.41912 8.05937 8.45459 8.81365 9.30313 10.86086 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.033517 B = 0.005373 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.187300 B = 5210.410063 C = 5708.269419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.151 4.151 3 C 0.192 3.808 4 H 0.049 0.951 5 C -0.527 4.527 6 H 0.088 0.912 7 C 0.081 3.919 8 N -0.886 5.886 9 Si 0.877 3.123 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.260 1.260 13 O -0.318 6.318 14 C 0.538 3.462 15 O -0.486 6.486 16 C -0.025 4.025 17 C -0.115 4.115 18 C -0.187 4.187 19 C 0.050 3.950 20 Cl 0.033 6.967 21 O -0.137 6.137 22 H 0.043 0.957 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.270 0.730 28 H 0.173 0.827 29 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.514 5.537 -10.652 18.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 C 0.138 3.862 4 H 0.066 0.934 5 C -0.565 4.565 6 H 0.106 0.894 7 C -0.122 4.122 8 N -0.522 5.522 9 Si 0.706 3.294 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.184 1.184 13 O -0.233 6.233 14 C 0.382 3.618 15 O -0.377 6.377 16 C -0.076 4.076 17 C -0.135 4.135 18 C -0.207 4.207 19 C -0.029 4.029 20 Cl 0.062 6.938 21 O -0.032 6.032 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.191 0.809 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -13.155 5.347 -10.405 17.604 hybrid contribution -0.417 -0.447 0.573 0.838 sum -13.572 4.900 -9.832 17.461 Atomic orbital electron populations 1.21920 0.96968 1.00296 1.01683 1.22421 0.94371 0.99541 1.02488 1.20747 0.96760 0.88312 0.80341 0.93361 1.20777 0.87422 1.40210 1.08056 0.89378 1.24734 0.94970 0.95192 0.97352 1.69834 1.08508 1.44108 1.29798 0.86993 0.81016 0.80159 0.81256 1.19857 1.21603 1.18416 1.86283 1.32758 1.61672 1.42556 1.19127 0.81539 0.76686 0.84458 1.90917 1.55778 1.58800 1.32211 1.21256 0.94128 1.07458 0.84728 1.21926 0.97004 0.97385 0.97180 1.21492 0.98265 1.06604 0.94371 1.22920 0.92370 1.00632 0.86952 1.98446 1.93054 1.92379 1.09904 1.84148 1.42818 1.57152 1.19131 0.93753 0.93669 0.92368 0.91046 0.91578 0.91980 0.80939 0.81330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.55 37.16 0.32 -2.60 15 2 C -0.15 -3.38 5.14 -26.73 -0.14 -3.51 15 3 C 0.19 4.79 1.81 -27.88 -0.05 4.74 15 4 H 0.05 1.25 6.17 -51.93 -0.32 0.93 15 5 C -0.53 -15.07 9.47 -34.44 -0.33 -15.40 15 6 H 0.09 2.74 8.06 -52.49 -0.42 2.31 15 7 C 0.08 2.31 5.45 -17.82 -0.10 2.22 15 8 N -0.89 -26.53 13.96 55.43 0.77 -25.76 15 9 Si 0.88 21.31 24.41 -169.99 -4.15 17.16 15 10 H -0.27 -6.34 6.83 56.52 0.39 -5.95 15 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 12 H -0.26 -6.14 6.53 56.52 0.37 -5.77 15 13 O -0.32 -7.39 9.70 -42.58 -0.41 -7.80 15 14 C 0.54 10.81 6.33 33.99 0.21 11.02 15 15 O -0.49 -10.12 13.99 -19.37 -0.27 -10.40 15 16 C -0.02 -0.41 7.18 -36.88 -0.26 -0.67 15 17 C -0.12 -1.46 10.62 -39.40 -0.42 -1.88 15 18 C -0.19 -2.00 10.84 -39.86 -0.43 -2.43 15 19 C 0.05 0.64 7.93 29.73 0.24 0.87 15 20 Cl 0.03 0.34 29.30 -51.86 -1.52 -1.18 15 21 O -0.14 -2.22 10.67 4.46 0.05 -2.17 15 22 H 0.04 0.83 6.05 -51.93 -0.31 0.51 15 23 H 0.04 0.75 8.14 -51.93 -0.42 0.32 15 24 H 0.06 1.14 7.75 -51.93 -0.40 0.74 15 25 H 0.07 1.56 8.14 -51.92 -0.42 1.13 15 26 H 0.07 1.52 3.22 -51.93 -0.17 1.35 15 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 15 28 H 0.17 1.83 8.06 -52.48 -0.42 1.41 15 29 H 0.17 1.20 8.06 -52.49 -0.42 0.77 15 LS Contribution 267.76 15.07 4.04 4.04 Total: -1.00 -30.41 267.76 -4.96 -35.37 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -2.50 Total: -1.62 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -0.96 Total: -7.64 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.77 Total: -25.76 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.64 Total: -20.37 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.15 Total: 17.16 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -1.52 Total: -1.18 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.41 -4.96 -35.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188056107.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.457 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds