Wall clock time and date at job start Mon Mar 30 2020 07:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47241 * 2 1 4 4 H 1.09000 * 109.46955 * 55.00117 * 3 2 1 5 5 C 1.50704 * 109.47224 * 175.00377 * 3 2 1 6 6 H 1.07998 * 119.99806 * 120.00025 * 5 3 2 7 7 C 1.37876 * 119.99865 * 300.00310 * 5 3 2 8 8 N 1.31512 * 119.99912 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 119.99968 * 359.97438 * 7 5 3 10 10 H 1.48509 * 109.47158 * 90.00384 * 9 7 5 11 11 H 1.48503 * 109.47252 * 210.00186 * 9 7 5 12 12 H 1.48505 * 109.47321 * 330.00533 * 9 7 5 13 13 O 1.42905 * 109.46996 * 295.00233 * 3 2 1 14 14 C 1.34921 * 116.99780 * 89.99969 * 13 3 2 15 15 O 1.21643 * 119.99894 * 0.02562 * 14 13 3 16 16 C 1.46332 * 119.99642 * 179.97438 * 14 13 3 17 17 C 1.36710 * 125.98233 * 180.02562 * 16 14 13 18 18 C 1.40189 * 106.73429 * 179.97438 * 17 16 14 19 19 C 1.35416 * 107.12744 * 359.97438 * 18 17 16 20 20 Cl 1.73601 * 125.62552 * 180.02562 * 19 18 17 21 21 O 1.33934 * 108.74752 * 359.77547 * 19 18 17 22 22 H 1.08998 * 109.47215 * 59.99685 * 1 2 3 23 23 H 1.08999 * 109.47060 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46631 * 300.00017 * 1 2 3 25 25 H 1.09009 * 109.46740 * 240.00421 * 2 1 3 26 26 H 1.08998 * 109.47215 * 120.00315 * 2 1 3 27 27 H 0.97002 * 119.99922 * 179.97438 * 8 7 5 28 28 H 1.08004 * 126.63540 * 359.96174 * 17 16 14 29 29 H 1.08000 * 126.43797 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4443 0.1237 6 1 4.1472 1.8889 -0.6524 7 6 4.1434 0.8783 1.2278 8 7 5.4541 0.8803 1.3360 9 14 3.0965 0.1099 2.5705 10 1 2.8746 -1.3262 2.2644 11 1 3.7944 0.2357 3.8753 12 1 1.7882 0.8092 2.6394 13 8 1.6620 2.0814 -1.2211 14 6 0.4727 2.7184 -1.2363 15 8 -0.2235 2.7308 -0.2389 16 6 0.0209 3.3953 -2.4524 17 6 -1.1556 4.0750 -2.6035 18 6 -1.1761 4.5591 -3.9190 19 6 -0.0244 4.1598 -4.5088 20 17 0.4445 4.5002 -6.1453 21 8 0.6957 3.4636 -3.6197 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 5.8772 0.4824 2.1130 28 1 -1.9214 4.2123 -1.8544 29 1 -1.9623 5.1418 -4.3760 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188056107.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:12 Heat of formation + Delta-G solvation = -86.257690 kcal Electronic energy + Delta-G solvation = -17032.961618 eV Core-core repulsion = 13948.923405 eV Total energy + Delta-G solvation = -3084.038213 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.049 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.98039 -41.57073 -38.20497 -38.05123 -35.60138 -34.44426 -33.96692 -31.21953 -29.76571 -25.79302 -24.49276 -23.17893 -22.60530 -21.55529 -20.02219 -18.85663 -18.51410 -18.03981 -17.63145 -17.09804 -16.45720 -15.33818 -14.97101 -14.64534 -14.58601 -14.25240 -14.21622 -13.89415 -13.72269 -13.32233 -13.25845 -13.13910 -12.61583 -12.52655 -12.10241 -11.96459 -11.56194 -11.41964 -11.30703 -11.18598 -10.76544 -9.84054 -8.46502 -6.56719 -0.45220 -0.09444 0.97750 1.23821 1.31159 1.41510 1.49070 1.71451 2.19013 2.30872 2.85357 3.60082 3.71860 4.06292 4.11938 4.14687 4.20810 4.28562 4.51747 4.69718 4.90825 4.93019 4.98685 5.05780 5.25270 5.28933 5.46301 5.50826 6.05108 6.46770 6.68719 7.07888 8.69645 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.033517 B = 0.005373 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.187300 B = 5210.410063 C = 5708.269419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.149 4.149 3 C 0.198 3.802 4 H 0.039 0.961 5 C -0.546 4.546 6 H 0.041 0.959 7 C 0.030 3.970 8 N -0.930 5.930 9 Si 0.941 3.059 10 H -0.249 1.249 11 H -0.283 1.283 12 H -0.249 1.249 13 O -0.342 6.342 14 C 0.537 3.463 15 O -0.500 6.500 16 C -0.073 4.073 17 C -0.081 4.081 18 C -0.168 4.168 19 C 0.046 3.954 20 Cl 0.054 6.946 21 O -0.168 6.168 22 H 0.044 0.956 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.276 0.724 28 H 0.198 0.802 29 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.598 5.609 -10.993 20.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.187 4.187 3 C 0.143 3.857 4 H 0.056 0.944 5 C -0.583 4.583 6 H 0.059 0.941 7 C -0.170 4.170 8 N -0.568 5.568 9 Si 0.765 3.235 10 H -0.175 1.175 11 H -0.209 1.209 12 H -0.173 1.173 13 O -0.258 6.258 14 C 0.383 3.617 15 O -0.392 6.392 16 C -0.123 4.123 17 C -0.100 4.100 18 C -0.187 4.187 19 C -0.032 4.032 20 Cl 0.083 6.917 21 O -0.066 6.066 22 H 0.063 0.937 23 H 0.096 0.904 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.215 0.785 29 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -16.258 5.429 -10.771 20.243 hybrid contribution 0.565 -0.310 0.456 0.790 sum -15.693 5.119 -10.314 19.464 Atomic orbital electron populations 1.21839 0.94184 1.02385 1.01560 1.22326 0.96823 0.97251 1.02277 1.20434 0.94195 0.90139 0.80922 0.94382 1.20975 0.89652 1.40344 1.07362 0.94052 1.25623 0.96196 0.95397 0.99749 1.69967 1.10541 1.45273 1.31042 0.85961 0.79453 0.80309 0.77761 1.17460 1.20914 1.17285 1.86251 1.35121 1.62730 1.41668 1.19545 0.80206 0.76091 0.85865 1.90879 1.55702 1.59468 1.33142 1.20876 0.96103 1.10952 0.84371 1.22369 0.95250 0.94084 0.98314 1.21994 0.98201 1.05503 0.93032 1.23505 0.92674 0.99624 0.87427 1.98459 1.93021 1.92043 1.08216 1.84088 1.44163 1.58605 1.19717 0.93703 0.90406 0.92684 0.91151 0.91859 0.91443 0.78534 0.76928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 8.55 71.98 0.62 -4.58 15 2 C -0.15 -6.59 5.14 30.60 0.16 -6.43 15 3 C 0.20 10.07 1.81 29.85 0.05 10.13 15 4 H 0.04 2.00 6.17 -2.39 -0.01 1.99 15 5 C -0.55 -32.73 9.47 25.60 0.24 -32.49 15 6 H 0.04 2.77 8.06 -2.91 -0.02 2.75 15 7 C 0.03 1.77 5.45 84.65 0.46 2.23 15 8 N -0.93 -57.55 13.96 21.45 0.30 -57.25 15 9 Si 0.94 43.85 24.41 68.60 1.67 45.52 15 10 H -0.25 -10.70 6.83 99.48 0.68 -10.02 15 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 12 H -0.25 -11.11 6.53 99.48 0.65 -10.46 15 13 O -0.34 -16.51 9.70 -56.96 -0.55 -17.07 15 14 C 0.54 21.81 6.33 69.93 0.44 22.25 15 15 O -0.50 -20.65 13.99 19.37 0.27 -20.38 15 16 C -0.07 -2.37 7.18 24.02 0.17 -2.20 15 17 C -0.08 -1.82 10.62 22.39 0.24 -1.58 15 18 C -0.17 -2.94 10.84 22.09 0.24 -2.70 15 19 C 0.05 1.07 7.93 67.17 0.53 1.60 15 20 Cl 0.05 0.99 29.30 -2.72 -0.08 0.91 15 21 O -0.17 -5.43 10.67 -5.74 -0.06 -5.50 15 22 H 0.04 1.61 6.05 -2.39 -0.01 1.59 15 23 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 24 H 0.05 2.03 7.75 -2.39 -0.02 2.01 15 25 H 0.07 3.06 8.14 -2.38 -0.02 3.04 15 26 H 0.06 2.80 3.22 -2.39 -0.01 2.79 15 27 H 0.28 15.70 8.31 -92.71 -0.77 14.93 15 28 H 0.20 3.40 8.06 -2.91 -0.02 3.38 15 29 H 0.21 1.78 8.06 -2.91 -0.02 1.76 15 Total: -1.00 -69.36 267.76 5.81 -63.56 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: 1.10 Total: 3.98 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 3.15 Total: -13.77 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.30 Total: -57.25 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -0.34 Total: -42.94 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.67 Total: 45.52 kcal Atomic # 17 Polarization: 0.99 SS G_CDS: -0.08 Total: 0.91 kcal Total: -69.36 5.81 -63.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188056107.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.703 kcal (2) G-P(sol) polarization free energy of solvation -69.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds