Wall clock time and date at job start Mon Mar 30 2020 06:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81405 * 109.47254 * 2 1 4 4 C 1.81401 * 103.00030 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47050 * 55.00049 * 4 3 2 6 6 C 1.53007 * 109.47306 * 295.00210 * 4 3 2 7 7 C 1.52997 * 109.47094 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47179 * 59.99576 * 7 6 4 9 9 C 1.53003 * 109.47604 * 299.99880 * 8 7 6 10 10 C 1.52999 * 109.46987 * 174.99774 * 4 3 2 11 11 H 1.09002 * 109.47001 * 60.00245 * 10 4 3 12 12 N 1.46890 * 109.47297 * 300.00151 * 10 4 3 13 13 C 1.46900 * 111.00152 * 155.73931 * 12 10 4 14 14 H 1.09006 * 109.46878 * 34.36498 * 13 12 10 15 15 C 1.53006 * 109.47446 * 154.36135 * 13 12 10 16 16 C 1.50692 * 109.47471 * 274.36507 * 13 12 10 17 17 H 1.07995 * 120.00111 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00498 * 179.97438 * 16 13 12 19 19 N 1.31511 * 120.00615 * 179.97438 * 18 16 13 20 20 Si 1.86804 * 119.99585 * 359.97438 * 18 16 13 21 21 H 1.48507 * 109.47093 * 90.00423 * 20 18 16 22 22 H 1.48506 * 109.47183 * 209.99838 * 20 18 16 23 23 H 1.48493 * 109.47417 * 330.00410 * 20 18 16 24 24 H 1.08999 * 109.47298 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47260 * 300.00108 * 1 2 3 26 26 H 1.09000 * 109.46848 * 59.99977 * 1 2 3 27 27 H 1.08998 * 109.47260 * 239.99892 * 2 1 3 28 28 H 1.09005 * 109.47306 * 120.00105 * 2 1 3 29 29 H 1.08994 * 109.46657 * 299.99901 * 6 4 3 30 30 H 1.08992 * 109.47019 * 59.99901 * 6 4 3 31 31 H 1.09002 * 109.47069 * 299.99722 * 7 6 4 32 32 H 1.08997 * 109.47141 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.46906 * 179.97438 * 8 7 6 34 34 H 1.09002 * 109.47001 * 60.00104 * 8 7 6 35 35 H 1.08994 * 109.46845 * 300.00157 * 9 8 7 36 36 H 1.08992 * 109.47170 * 179.97438 * 9 8 7 37 37 H 1.00897 * 111.00243 * 31.78981 * 12 10 4 38 38 H 1.08995 * 109.47048 * 185.83191 * 15 13 12 39 39 H 1.08999 * 109.46759 * 305.83501 * 15 13 12 40 40 H 1.09002 * 109.46800 * 65.83148 * 15 13 12 41 41 H 0.96996 * 120.00365 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9371 1.5058 0.0008 5 1 4.2321 0.8790 -0.8408 6 6 4.3747 0.8427 1.3084 7 6 5.8950 0.6708 1.3093 8 6 6.5632 2.0414 1.1839 9 6 6.1258 2.7045 -0.1237 10 6 4.6059 2.8762 -0.1249 11 1 4.3110 3.5029 0.7167 12 7 4.1858 3.5127 -1.3803 13 6 4.3051 4.9744 -1.2951 14 1 5.1650 5.2333 -0.6772 15 6 4.4930 5.5535 -2.6988 16 6 3.0539 5.5455 -0.6794 17 1 2.2502 4.8885 -0.3816 18 6 2.9350 6.9069 -0.4963 19 7 1.8429 7.4054 0.0405 20 14 4.3255 8.0433 -1.0108 21 1 4.1236 8.4660 -2.4200 22 1 4.3374 9.2404 -0.1319 23 1 5.6207 7.3273 -0.8895 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 4.0797 1.4695 2.1500 30 1 3.8982 -0.1335 1.3979 31 1 6.1903 0.0443 0.4677 32 1 6.2066 0.1981 2.2407 33 1 7.6463 1.9190 1.1850 34 1 6.2679 2.6680 2.0256 35 1 6.4211 2.0780 -0.9653 36 1 6.6015 3.6811 -0.2128 37 1 3.2461 3.2405 -1.6271 38 1 4.6848 6.6241 -2.6274 39 1 5.3380 5.0644 -3.1834 40 1 3.5900 5.3845 -3.2854 41 1 1.7595 8.3631 0.1697 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190015666.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:27 Heat of formation + Delta-G solvation = -23.792172 kcal Electronic energy + Delta-G solvation = -18151.204581 eV Core-core repulsion = 15577.136728 eV Total energy + Delta-G solvation = -2574.067853 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.55069 -35.32555 -32.72161 -32.23853 -30.74619 -30.33479 -27.00244 -24.83701 -23.55599 -22.62473 -21.50101 -19.75110 -19.48860 -16.84816 -16.13000 -15.28783 -14.95365 -14.81593 -14.66553 -14.13634 -13.93378 -13.38215 -13.09646 -12.92668 -12.51193 -12.30789 -12.06430 -12.01238 -11.61770 -11.42385 -11.26796 -11.22087 -11.02752 -10.77898 -10.68615 -10.37816 -10.27007 -9.98045 -9.75445 -9.45994 -9.29769 -9.09441 -8.51581 -7.44740 -7.15359 -6.02765 -4.02579 1.95655 2.90482 3.31063 3.40270 3.42685 4.44454 4.71735 4.84582 4.99091 5.05259 5.12835 5.23488 5.30830 5.35347 5.42567 5.57072 5.63523 5.68873 5.74008 5.75845 5.85876 5.89735 6.06274 6.15079 6.24938 6.28686 6.31246 6.38810 6.48351 6.58440 6.63919 6.76379 6.82785 7.08801 7.33547 7.66608 8.12228 8.49211 8.61444 9.04434 9.60843 11.10371 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.018444 B = 0.007532 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.745615 B = 3716.433593 C = 4672.065053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.101 4.101 3 S -0.231 6.231 4 C -0.054 4.054 5 H 0.086 0.914 6 C -0.111 4.111 7 C -0.113 4.113 8 C -0.121 4.121 9 C -0.102 4.102 10 C 0.113 3.887 11 H 0.059 0.941 12 N -0.682 5.682 13 C 0.177 3.823 14 H 0.030 0.970 15 C -0.138 4.138 16 C -0.540 4.540 17 H 0.079 0.921 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.889 3.111 21 H -0.280 1.280 22 H -0.299 1.299 23 H -0.268 1.268 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.345 0.655 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.050 0.950 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.171 -15.158 1.304 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.250 4.250 3 S -0.002 6.002 4 C -0.183 4.183 5 H 0.104 0.896 6 C -0.151 4.151 7 C -0.153 4.153 8 C -0.159 4.159 9 C -0.142 4.142 10 C 0.001 3.999 11 H 0.077 0.923 12 N -0.315 5.315 13 C 0.067 3.933 14 H 0.048 0.952 15 C -0.195 4.195 16 C -0.579 4.579 17 H 0.097 0.903 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.227 1.227 23 H -0.193 1.193 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.166 0.834 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.019 -14.137 1.020 15.037 hybrid contribution 0.537 -0.084 0.286 0.614 sum 5.556 -14.222 1.307 15.324 Atomic orbital electron populations 1.21475 0.92594 1.01831 1.03406 1.23320 1.00078 0.97542 1.04067 1.87691 1.05368 1.09544 1.97558 1.23428 0.92913 1.01555 1.00377 0.89602 1.21847 0.96024 1.00115 0.97124 1.21535 0.94809 0.97580 1.01344 1.21570 0.99461 0.96150 0.98736 1.21533 0.95212 1.00853 0.96569 1.21106 0.93660 0.90856 0.94291 0.92278 1.60906 1.31273 1.09711 1.29574 1.19578 0.96781 0.84223 0.92683 0.95218 1.22033 0.99963 0.98132 0.99411 1.21810 1.02341 0.93226 1.40509 0.90278 1.24990 0.95295 0.98217 0.94509 1.69925 1.26738 1.12699 1.44283 0.86849 0.83465 0.80037 0.77699 1.20653 1.22732 1.19320 0.91769 0.91732 0.91627 0.90718 0.90721 0.90683 0.92369 0.92165 0.92121 0.92169 0.91868 0.91833 0.91553 0.83430 0.94657 0.94613 0.93078 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 9.92 37.16 0.37 -1.16 16 2 C -0.10 -1.25 6.36 37.16 0.24 -1.02 16 3 S -0.23 -3.91 19.62 -107.50 -2.11 -6.01 16 4 C -0.05 -0.82 2.29 -26.73 -0.06 -0.89 16 5 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 6 C -0.11 -1.43 5.11 -26.73 -0.14 -1.57 16 7 C -0.11 -1.29 5.92 -26.73 -0.16 -1.44 16 8 C -0.12 -1.55 5.92 -26.73 -0.16 -1.71 16 9 C -0.10 -1.59 5.40 -26.75 -0.14 -1.74 16 10 C 0.11 2.05 1.78 -67.74 -0.12 1.93 16 11 H 0.06 1.28 7.67 -51.93 -0.40 0.88 16 12 N -0.68 -14.21 6.05 -100.98 -0.61 -14.82 16 13 C 0.18 4.24 1.99 -68.87 -0.14 4.10 16 14 H 0.03 0.74 6.11 -51.93 -0.32 0.43 16 15 C -0.14 -3.12 8.92 37.16 0.33 -2.79 16 16 C -0.54 -15.23 8.87 -34.44 -0.31 -15.54 16 17 H 0.08 2.44 7.98 -52.49 -0.42 2.02 16 18 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 19 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 20 Si 0.89 22.44 24.31 -169.99 -4.13 18.31 16 21 H -0.28 -6.92 6.92 56.52 0.39 -6.53 16 22 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 23 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.83 7.14 -51.92 -0.37 0.46 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.66 6.92 -51.93 -0.36 0.30 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.13 7.37 -51.93 -0.38 0.74 16 37 H 0.35 7.49 6.55 -39.29 -0.26 7.23 16 38 H 0.03 0.82 3.45 -51.93 -0.18 0.64 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 LS Contribution 319.78 15.07 4.82 4.82 Total: -1.00 -30.01 319.78 -9.00 -39.01 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -7.36 Total: 5.59 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -0.38 Total: -19.80 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.16 Total: -41.92 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.13 Total: 18.31 kcal Atomic # 16 Polarization: -3.91 SS G_CDS: -2.11 Total: -6.01 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.01 -9.00 -39.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190015666.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.220 kcal (2) G-P(sol) polarization free energy of solvation -30.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds