Wall clock time and date at job start Mon Mar 30 2020 06:16:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 S 1.81405 * 109.47254 * 2 1
4 4 C 1.81401 * 103.00030 * 179.97438 * 3 2 1
5 5 H 1.09002 * 109.47050 * 55.00049 * 4 3 2
6 6 C 1.53007 * 109.47306 * 295.00210 * 4 3 2
7 7 C 1.52997 * 109.47094 * 180.02562 * 6 4 3
8 8 C 1.52999 * 109.47179 * 59.99576 * 7 6 4
9 9 C 1.53003 * 109.47604 * 299.99880 * 8 7 6
10 10 C 1.52999 * 109.46987 * 174.99774 * 4 3 2
11 11 H 1.09002 * 109.47001 * 60.00245 * 10 4 3
12 12 N 1.46890 * 109.47297 * 300.00151 * 10 4 3
13 13 C 1.46900 * 111.00152 * 155.73931 * 12 10 4
14 14 H 1.09006 * 109.46878 * 34.36498 * 13 12 10
15 15 C 1.53006 * 109.47446 * 154.36135 * 13 12 10
16 16 C 1.50692 * 109.47471 * 274.36507 * 13 12 10
17 17 H 1.07995 * 120.00111 * 359.97438 * 16 13 12
18 18 C 1.37878 * 120.00498 * 179.97438 * 16 13 12
19 19 N 1.31511 * 120.00615 * 179.97438 * 18 16 13
20 20 Si 1.86804 * 119.99585 * 359.97438 * 18 16 13
21 21 H 1.48507 * 109.47093 * 90.00423 * 20 18 16
22 22 H 1.48506 * 109.47183 * 209.99838 * 20 18 16
23 23 H 1.48493 * 109.47417 * 330.00410 * 20 18 16
24 24 H 1.08999 * 109.47298 * 179.97438 * 1 2 3
25 25 H 1.08998 * 109.47260 * 300.00108 * 1 2 3
26 26 H 1.09000 * 109.46848 * 59.99977 * 1 2 3
27 27 H 1.08998 * 109.47260 * 239.99892 * 2 1 3
28 28 H 1.09005 * 109.47306 * 120.00105 * 2 1 3
29 29 H 1.08994 * 109.46657 * 299.99901 * 6 4 3
30 30 H 1.08992 * 109.47019 * 59.99901 * 6 4 3
31 31 H 1.09002 * 109.47069 * 299.99722 * 7 6 4
32 32 H 1.08997 * 109.47141 * 180.02562 * 7 6 4
33 33 H 1.09001 * 109.46906 * 179.97438 * 8 7 6
34 34 H 1.09002 * 109.47001 * 60.00104 * 8 7 6
35 35 H 1.08994 * 109.46845 * 300.00157 * 9 8 7
36 36 H 1.08992 * 109.47170 * 179.97438 * 9 8 7
37 37 H 1.00897 * 111.00243 * 31.78981 * 12 10 4
38 38 H 1.08995 * 109.47048 * 185.83191 * 15 13 12
39 39 H 1.08999 * 109.46759 * 305.83501 * 15 13 12
40 40 H 1.09002 * 109.46800 * 65.83148 * 15 13 12
41 41 H 0.96996 * 120.00365 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 16 2.1347 1.7103 0.0000
4 6 3.9371 1.5058 0.0008
5 1 4.2321 0.8790 -0.8408
6 6 4.3747 0.8427 1.3084
7 6 5.8950 0.6708 1.3093
8 6 6.5632 2.0414 1.1839
9 6 6.1258 2.7045 -0.1237
10 6 4.6059 2.8762 -0.1249
11 1 4.3110 3.5029 0.7167
12 7 4.1858 3.5127 -1.3803
13 6 4.3051 4.9744 -1.2951
14 1 5.1650 5.2333 -0.6772
15 6 4.4930 5.5535 -2.6988
16 6 3.0539 5.5455 -0.6794
17 1 2.2502 4.8885 -0.3816
18 6 2.9350 6.9069 -0.4963
19 7 1.8429 7.4054 0.0405
20 14 4.3255 8.0433 -1.0108
21 1 4.1236 8.4660 -2.4200
22 1 4.3374 9.2404 -0.1319
23 1 5.6207 7.3273 -0.8895
24 1 -0.3634 -1.0276 -0.0005
25 1 -0.3634 0.5138 0.8899
26 1 -0.3633 0.5138 -0.8900
27 1 1.8933 -0.5138 -0.8899
28 1 1.8933 -0.5139 0.8900
29 1 4.0797 1.4695 2.1500
30 1 3.8982 -0.1335 1.3979
31 1 6.1903 0.0443 0.4677
32 1 6.2066 0.1981 2.2407
33 1 7.6463 1.9190 1.1850
34 1 6.2679 2.6680 2.0256
35 1 6.4211 2.0780 -0.9653
36 1 6.6015 3.6811 -0.2128
37 1 3.2461 3.2405 -1.6271
38 1 4.6848 6.6241 -2.6274
39 1 5.3380 5.0644 -3.1834
40 1 3.5900 5.3845 -3.2854
41 1 1.7595 8.3631 0.1697
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000190015666.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:16:27
Heat of formation + Delta-G solvation = -23.792172 kcal
Electronic energy + Delta-G solvation = -18151.204581 eV
Core-core repulsion = 15577.136728 eV
Total energy + Delta-G solvation = -2574.067853 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 257.151 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-38.55069 -35.32555 -32.72161 -32.23853 -30.74619 -30.33479 -27.00244 -24.83701
-23.55599 -22.62473 -21.50101 -19.75110 -19.48860 -16.84816 -16.13000 -15.28783
-14.95365 -14.81593 -14.66553 -14.13634 -13.93378 -13.38215 -13.09646 -12.92668
-12.51193 -12.30789 -12.06430 -12.01238 -11.61770 -11.42385 -11.26796 -11.22087
-11.02752 -10.77898 -10.68615 -10.37816 -10.27007 -9.98045 -9.75445 -9.45994
-9.29769 -9.09441 -8.51581 -7.44740 -7.15359 -6.02765 -4.02579 1.95655
2.90482 3.31063 3.40270 3.42685 4.44454 4.71735 4.84582 4.99091
5.05259 5.12835 5.23488 5.30830 5.35347 5.42567 5.57072 5.63523
5.68873 5.74008 5.75845 5.85876 5.89735 6.06274 6.15079 6.24938
6.28686 6.31246 6.38810 6.48351 6.58440 6.63919 6.76379 6.82785
7.08801 7.33547 7.66608 8.12228 8.49211 8.61444 9.04434 9.60843
11.10371
Molecular weight = 257.15amu
Principal moments of inertia in cm(-1)
A = 0.018444 B = 0.007532 C = 0.005992
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1517.745615 B = 3716.433593 C = 4672.065053
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.101 4.101
3 S -0.231 6.231
4 C -0.054 4.054
5 H 0.086 0.914
6 C -0.111 4.111
7 C -0.113 4.113
8 C -0.121 4.121
9 C -0.102 4.102
10 C 0.113 3.887
11 H 0.059 0.941
12 N -0.682 5.682
13 C 0.177 3.823
14 H 0.030 0.970
15 C -0.138 4.138
16 C -0.540 4.540
17 H 0.079 0.921
18 C 0.072 3.928
19 N -0.898 5.898
20 Si 0.889 3.111
21 H -0.280 1.280
22 H -0.299 1.299
23 H -0.268 1.268
24 H 0.063 0.937
25 H 0.064 0.936
26 H 0.065 0.935
27 H 0.074 0.926
28 H 0.074 0.926
29 H 0.074 0.926
30 H 0.058 0.942
31 H 0.060 0.940
32 H 0.060 0.940
33 H 0.060 0.940
34 H 0.063 0.937
35 H 0.063 0.937
36 H 0.066 0.934
37 H 0.345 0.655
38 H 0.035 0.965
39 H 0.035 0.965
40 H 0.050 0.950
41 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.171 -15.158 1.304 16.068
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.250 4.250
3 S -0.002 6.002
4 C -0.183 4.183
5 H 0.104 0.896
6 C -0.151 4.151
7 C -0.153 4.153
8 C -0.159 4.159
9 C -0.142 4.142
10 C 0.001 3.999
11 H 0.077 0.923
12 N -0.315 5.315
13 C 0.067 3.933
14 H 0.048 0.952
15 C -0.195 4.195
16 C -0.579 4.579
17 H 0.097 0.903
18 C -0.130 4.130
19 N -0.536 5.536
20 Si 0.720 3.280
21 H -0.207 1.207
22 H -0.227 1.227
23 H -0.193 1.193
24 H 0.082 0.918
25 H 0.083 0.917
26 H 0.084 0.916
27 H 0.093 0.907
28 H 0.093 0.907
29 H 0.093 0.907
30 H 0.076 0.924
31 H 0.078 0.922
32 H 0.079 0.921
33 H 0.078 0.922
34 H 0.081 0.919
35 H 0.082 0.918
36 H 0.084 0.916
37 H 0.166 0.834
38 H 0.053 0.947
39 H 0.054 0.946
40 H 0.069 0.931
41 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 5.019 -14.137 1.020 15.037
hybrid contribution 0.537 -0.084 0.286 0.614
sum 5.556 -14.222 1.307 15.324
Atomic orbital electron populations
1.21475 0.92594 1.01831 1.03406 1.23320 1.00078 0.97542 1.04067
1.87691 1.05368 1.09544 1.97558 1.23428 0.92913 1.01555 1.00377
0.89602 1.21847 0.96024 1.00115 0.97124 1.21535 0.94809 0.97580
1.01344 1.21570 0.99461 0.96150 0.98736 1.21533 0.95212 1.00853
0.96569 1.21106 0.93660 0.90856 0.94291 0.92278 1.60906 1.31273
1.09711 1.29574 1.19578 0.96781 0.84223 0.92683 0.95218 1.22033
0.99963 0.98132 0.99411 1.21810 1.02341 0.93226 1.40509 0.90278
1.24990 0.95295 0.98217 0.94509 1.69925 1.26738 1.12699 1.44283
0.86849 0.83465 0.80037 0.77699 1.20653 1.22732 1.19320 0.91769
0.91732 0.91627 0.90718 0.90721 0.90683 0.92369 0.92165 0.92121
0.92169 0.91868 0.91833 0.91553 0.83430 0.94657 0.94613 0.93078
0.92830
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.53 9.92 37.16 0.37 -1.16 16
2 C -0.10 -1.25 6.36 37.16 0.24 -1.02 16
3 S -0.23 -3.91 19.62 -107.50 -2.11 -6.01 16
4 C -0.05 -0.82 2.29 -26.73 -0.06 -0.89 16
5 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16
6 C -0.11 -1.43 5.11 -26.73 -0.14 -1.57 16
7 C -0.11 -1.29 5.92 -26.73 -0.16 -1.44 16
8 C -0.12 -1.55 5.92 -26.73 -0.16 -1.71 16
9 C -0.10 -1.59 5.40 -26.75 -0.14 -1.74 16
10 C 0.11 2.05 1.78 -67.74 -0.12 1.93 16
11 H 0.06 1.28 7.67 -51.93 -0.40 0.88 16
12 N -0.68 -14.21 6.05 -100.98 -0.61 -14.82 16
13 C 0.18 4.24 1.99 -68.87 -0.14 4.10 16
14 H 0.03 0.74 6.11 -51.93 -0.32 0.43 16
15 C -0.14 -3.12 8.92 37.16 0.33 -2.79 16
16 C -0.54 -15.23 8.87 -34.44 -0.31 -15.54 16
17 H 0.08 2.44 7.98 -52.49 -0.42 2.02 16
18 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16
19 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16
20 Si 0.89 22.44 24.31 -169.99 -4.13 18.31 16
21 H -0.28 -6.92 6.92 56.52 0.39 -6.53 16
22 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16
23 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16
24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16
27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
28 H 0.07 0.83 7.14 -51.92 -0.37 0.46 16
29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
30 H 0.06 0.66 6.92 -51.93 -0.36 0.30 16
31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16
33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
36 H 0.07 1.13 7.37 -51.93 -0.38 0.74 16
37 H 0.35 7.49 6.55 -39.29 -0.26 7.23 16
38 H 0.03 0.82 3.45 -51.93 -0.18 0.64 16
39 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16
40 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16
41 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16
LS Contribution 319.78 15.07 4.82 4.82
Total: -1.00 -30.01 319.78 -9.00 -39.01
By element:
Atomic # 1 Polarization: 12.95 SS G_CDS: -7.36 Total: 5.59 kcal
Atomic # 6 Polarization: -19.42 SS G_CDS: -0.38 Total: -19.80 kcal
Atomic # 7 Polarization: -42.08 SS G_CDS: 0.16 Total: -41.92 kcal
Atomic # 14 Polarization: 22.44 SS G_CDS: -4.13 Total: 18.31 kcal
Atomic # 16 Polarization: -3.91 SS G_CDS: -2.11 Total: -6.01 kcal
Total LS contribution 4.82 Total: 4.82 kcal
Total: -30.01 -9.00 -39.01 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000190015666.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.220 kcal
(2) G-P(sol) polarization free energy of solvation -30.010 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.791 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.012 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.792 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds