Wall clock time and date at job start Mon Mar 30 2020 06:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81405 * 109.47254 * 2 1 4 4 C 1.81401 * 103.00030 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47050 * 55.00049 * 4 3 2 6 6 C 1.53007 * 109.47306 * 295.00210 * 4 3 2 7 7 C 1.52997 * 109.47094 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47179 * 59.99576 * 7 6 4 9 9 C 1.53003 * 109.47604 * 299.99880 * 8 7 6 10 10 C 1.52999 * 109.46987 * 174.99774 * 4 3 2 11 11 H 1.09002 * 109.47001 * 60.00245 * 10 4 3 12 12 N 1.46890 * 109.47297 * 300.00151 * 10 4 3 13 13 C 1.46900 * 111.00152 * 155.73931 * 12 10 4 14 14 H 1.09006 * 109.46878 * 34.36498 * 13 12 10 15 15 C 1.53006 * 109.47446 * 154.36135 * 13 12 10 16 16 C 1.50692 * 109.47471 * 274.36507 * 13 12 10 17 17 H 1.07995 * 120.00111 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00498 * 179.97438 * 16 13 12 19 19 N 1.31511 * 120.00615 * 179.97438 * 18 16 13 20 20 Si 1.86804 * 119.99585 * 359.97438 * 18 16 13 21 21 H 1.48507 * 109.47093 * 90.00423 * 20 18 16 22 22 H 1.48506 * 109.47183 * 209.99838 * 20 18 16 23 23 H 1.48493 * 109.47417 * 330.00410 * 20 18 16 24 24 H 1.08999 * 109.47298 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47260 * 300.00108 * 1 2 3 26 26 H 1.09000 * 109.46848 * 59.99977 * 1 2 3 27 27 H 1.08998 * 109.47260 * 239.99892 * 2 1 3 28 28 H 1.09005 * 109.47306 * 120.00105 * 2 1 3 29 29 H 1.08994 * 109.46657 * 299.99901 * 6 4 3 30 30 H 1.08992 * 109.47019 * 59.99901 * 6 4 3 31 31 H 1.09002 * 109.47069 * 299.99722 * 7 6 4 32 32 H 1.08997 * 109.47141 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.46906 * 179.97438 * 8 7 6 34 34 H 1.09002 * 109.47001 * 60.00104 * 8 7 6 35 35 H 1.08994 * 109.46845 * 300.00157 * 9 8 7 36 36 H 1.08992 * 109.47170 * 179.97438 * 9 8 7 37 37 H 1.00897 * 111.00243 * 31.78981 * 12 10 4 38 38 H 1.08995 * 109.47048 * 185.83191 * 15 13 12 39 39 H 1.08999 * 109.46759 * 305.83501 * 15 13 12 40 40 H 1.09002 * 109.46800 * 65.83148 * 15 13 12 41 41 H 0.96996 * 120.00365 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9371 1.5058 0.0008 5 1 4.2321 0.8790 -0.8408 6 6 4.3747 0.8427 1.3084 7 6 5.8950 0.6708 1.3093 8 6 6.5632 2.0414 1.1839 9 6 6.1258 2.7045 -0.1237 10 6 4.6059 2.8762 -0.1249 11 1 4.3110 3.5029 0.7167 12 7 4.1858 3.5127 -1.3803 13 6 4.3051 4.9744 -1.2951 14 1 5.1650 5.2333 -0.6772 15 6 4.4930 5.5535 -2.6988 16 6 3.0539 5.5455 -0.6794 17 1 2.2502 4.8885 -0.3816 18 6 2.9350 6.9069 -0.4963 19 7 1.8429 7.4054 0.0405 20 14 4.3255 8.0433 -1.0108 21 1 4.1236 8.4660 -2.4200 22 1 4.3374 9.2404 -0.1319 23 1 5.6207 7.3273 -0.8895 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 4.0797 1.4695 2.1500 30 1 3.8982 -0.1335 1.3979 31 1 6.1903 0.0443 0.4677 32 1 6.2066 0.1981 2.2407 33 1 7.6463 1.9190 1.1850 34 1 6.2679 2.6680 2.0256 35 1 6.4211 2.0780 -0.9653 36 1 6.6015 3.6811 -0.2128 37 1 3.2461 3.2405 -1.6271 38 1 4.6848 6.6241 -2.6274 39 1 5.3380 5.0644 -3.1834 40 1 3.5900 5.3845 -3.2854 41 1 1.7595 8.3631 0.1697 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190015666.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:26 Heat of formation + Delta-G solvation = -42.859529 kcal Electronic energy + Delta-G solvation = -18152.031404 eV Core-core repulsion = 15577.136728 eV Total energy + Delta-G solvation = -2574.894675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.87323 -37.01717 -34.31255 -33.64460 -32.16780 -31.75104 -28.47454 -27.00142 -24.58314 -23.83586 -22.76999 -21.58429 -20.70368 -18.96784 -17.44926 -17.01221 -16.54202 -16.07359 -15.72023 -15.52815 -15.08622 -14.92090 -14.70012 -14.39010 -14.03517 -13.86921 -13.63558 -13.28480 -13.00498 -12.85345 -12.62562 -12.47774 -12.41997 -12.19112 -12.10148 -11.91789 -11.64599 -11.50447 -11.36741 -11.17462 -10.93785 -10.75124 -10.49210 -9.15301 -8.59048 -8.29653 -6.33925 0.77490 1.28812 1.33073 1.43821 1.75126 2.30810 3.05177 3.36594 3.68026 3.99122 4.03461 4.05018 4.13067 4.22153 4.35550 4.42158 4.49064 4.52393 4.55464 4.60255 4.75849 4.82719 4.87885 4.91995 4.93796 4.97487 5.11029 5.13364 5.22214 5.22951 5.25428 5.26748 5.36125 5.47690 5.53613 5.60163 6.16745 6.43194 6.68153 6.82440 7.33619 8.87091 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.018444 B = 0.007532 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.745615 B = 3716.433593 C = 4672.065053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.076 4.076 3 S -0.330 6.330 4 C -0.032 4.032 5 H 0.098 0.902 6 C -0.107 4.107 7 C -0.106 4.106 8 C -0.118 4.118 9 C -0.097 4.097 10 C 0.110 3.890 11 H 0.014 0.986 12 N -0.673 5.673 13 C 0.182 3.818 14 H 0.024 0.976 15 C -0.134 4.134 16 C -0.538 4.538 17 H 0.036 0.964 18 C 0.013 3.987 19 N -0.948 5.948 20 Si 0.952 3.048 21 H -0.266 1.266 22 H -0.300 1.300 23 H -0.250 1.250 24 H 0.097 0.903 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.338 0.662 38 H 0.031 0.969 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.560 -17.416 0.670 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.224 4.224 3 S -0.102 6.102 4 C -0.160 4.160 5 H 0.116 0.884 6 C -0.147 4.147 7 C -0.146 4.146 8 C -0.156 4.156 9 C -0.137 4.137 10 C -0.001 4.001 11 H 0.032 0.968 12 N -0.304 5.304 13 C 0.072 3.928 14 H 0.042 0.958 15 C -0.191 4.191 16 C -0.577 4.577 17 H 0.054 0.946 18 C -0.185 4.185 19 N -0.589 5.589 20 Si 0.779 3.221 21 H -0.192 1.192 22 H -0.228 1.228 23 H -0.174 1.174 24 H 0.116 0.884 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.158 0.842 38 H 0.050 0.950 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.429 -16.422 0.381 18.028 hybrid contribution -0.315 0.518 0.527 0.803 sum 7.114 -15.904 0.907 17.447 Atomic orbital electron populations 1.21508 0.91991 1.03489 1.02231 1.23343 1.00298 0.93148 1.05641 1.88104 1.08628 1.15649 1.97796 1.23323 0.90507 0.99839 1.02381 0.88364 1.21835 0.97728 1.00414 0.94675 1.21529 0.92846 0.96822 1.03364 1.21569 1.01123 0.96624 0.96321 1.21505 0.92563 1.00662 0.98958 1.21195 0.95949 0.91673 0.91280 0.96823 1.60986 1.30692 1.07791 1.30898 1.19441 0.94094 0.86091 0.93210 0.95811 1.21948 1.00960 0.98029 0.98196 1.22068 1.02847 0.92874 1.39909 0.94579 1.25866 0.97898 1.00036 0.94689 1.70082 1.29254 1.13147 1.46371 0.85819 0.80782 0.77716 0.77797 1.19171 1.22789 1.17373 0.88409 0.92910 0.92918 0.89142 0.88851 0.92651 0.90091 0.90462 0.89717 0.89662 0.93296 0.90395 0.93290 0.84235 0.95004 0.91634 0.93660 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 9.92 71.98 0.71 -2.16 16 2 C -0.08 -1.76 6.36 71.98 0.46 -1.30 16 3 S -0.33 -11.51 19.62 -56.49 -1.11 -12.62 16 4 C -0.03 -0.96 2.29 30.60 0.07 -0.89 16 5 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 6 C -0.11 -2.55 5.11 30.60 0.16 -2.39 16 7 C -0.11 -2.03 5.92 30.59 0.18 -1.85 16 8 C -0.12 -2.75 5.92 30.59 0.18 -2.57 16 9 C -0.10 -2.90 5.40 30.58 0.17 -2.74 16 10 C 0.11 4.07 1.78 44.90 0.08 4.15 16 11 H 0.01 0.63 7.67 -2.39 -0.02 0.61 16 12 N -0.67 -28.32 6.05 -473.40 -2.86 -31.19 16 13 C 0.18 8.80 1.99 44.17 0.09 8.88 16 14 H 0.02 1.19 6.11 -2.38 -0.01 1.18 16 15 C -0.13 -5.88 8.92 71.98 0.64 -5.24 16 16 C -0.54 -31.64 8.87 25.60 0.23 -31.41 16 17 H 0.04 2.39 7.98 -2.91 -0.02 2.36 16 18 C 0.01 0.76 5.45 84.66 0.46 1.22 16 19 N -0.95 -61.26 13.96 21.45 0.30 -60.96 16 20 Si 0.95 46.56 24.31 68.60 1.67 48.23 16 21 H -0.27 -12.37 6.92 99.48 0.69 -11.68 16 22 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 23 H -0.25 -11.38 6.53 99.48 0.65 -10.73 16 24 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.09 1.82 7.14 -2.39 -0.02 1.80 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.58 6.92 -2.39 -0.02 1.56 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.05 1.62 7.37 -2.39 -0.02 1.60 16 37 H 0.34 15.17 6.55 -89.70 -0.59 14.58 16 38 H 0.03 1.41 3.45 -2.39 -0.01 1.40 16 39 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -68.76 319.78 1.74 -67.02 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.32 Total: 25.81 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 3.42 Total: -36.29 kcal Atomic # 7 Polarization: -89.59 SS G_CDS: -2.57 Total: -92.15 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.67 Total: 48.23 kcal Atomic # 16 Polarization: -11.51 SS G_CDS: -1.11 Total: -12.62 kcal Total: -68.76 1.74 -67.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190015666.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.162 kcal (2) G-P(sol) polarization free energy of solvation -68.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds