Wall clock time and date at job start Mon Mar 30 2020 07:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47009 * 2 1 4 4 H 1.08999 * 109.47141 * 55.00444 * 3 2 1 5 5 C 1.50703 * 109.46823 * 175.00199 * 3 2 1 6 6 H 1.08001 * 120.00042 * 120.00442 * 5 3 2 7 7 C 1.37876 * 120.00143 * 299.99941 * 5 3 2 8 8 N 1.31512 * 120.00032 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 119.99951 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.46635 * 89.99922 * 9 7 5 11 11 H 1.48499 * 109.47266 * 209.99711 * 9 7 5 12 12 H 1.48496 * 109.47175 * 330.00237 * 9 7 5 13 13 O 1.45194 * 109.47539 * 295.00054 * 3 2 1 14 14 C 1.34797 * 116.99813 * 90.00147 * 13 3 2 15 15 O 1.21557 * 119.99884 * 359.97438 * 14 13 3 16 16 C 1.47057 * 119.99987 * 180.02562 * 14 13 3 17 17 C 1.47119 * 127.21758 * 0.30336 * 16 14 13 18 18 C 1.34092 * 105.97515 * 180.15612 * 17 16 14 19 19 O 1.34299 * 109.19557 * 359.60649 * 18 17 16 20 20 C 1.33659 * 110.92982 * 0.26472 * 19 18 17 21 21 Cl 1.73597 * 125.83411 * 180.02562 * 20 19 18 22 22 H 1.09004 * 109.46821 * 299.99880 * 1 2 3 23 23 H 1.09000 * 109.47407 * 59.99751 * 1 2 3 24 24 H 1.08997 * 109.47269 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46821 * 240.00120 * 2 1 3 26 26 H 1.09000 * 109.47407 * 120.00249 * 2 1 3 27 27 H 0.97008 * 120.00292 * 179.97438 * 8 7 5 28 28 H 1.08001 * 127.01632 * 0.07112 * 17 16 14 29 29 H 1.08002 * 125.40610 * 179.87440 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4540 0.8794 1.3356 9 14 3.0965 0.1087 2.5700 10 1 2.8757 -1.3274 2.2632 11 1 3.7938 0.2345 3.8751 12 1 1.7878 0.8071 2.6386 13 8 1.6559 2.0917 -1.2406 14 6 0.4678 2.7282 -1.2559 15 8 -0.2284 2.7397 -0.2594 16 6 0.0132 3.4076 -2.4783 17 6 0.7187 3.4873 -3.7668 18 6 -0.0726 4.2051 -4.5771 19 8 -1.1841 4.5571 -3.9105 20 6 -1.1562 4.0934 -2.6572 21 17 -2.3936 4.3220 -1.4613 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 5.8772 0.4816 2.1126 28 1 1.6789 3.0568 -4.0101 29 1 0.1468 4.4564 -5.6043 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193019259.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:20 Heat of formation + Delta-G solvation = -87.296683 kcal Electronic energy + Delta-G solvation = -17189.964865 eV Core-core repulsion = 14105.881598 eV Total energy + Delta-G solvation = -3084.083267 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.049 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.73942 -41.27022 -38.25008 -37.71089 -35.54188 -34.26936 -33.78166 -30.76248 -29.79996 -25.98237 -24.53400 -23.04159 -22.17063 -21.25224 -19.82977 -18.77290 -18.31350 -17.74081 -17.35188 -16.99793 -16.44452 -15.61842 -15.32379 -14.91223 -14.37404 -14.14879 -13.97425 -13.85716 -13.53243 -13.33147 -13.17193 -13.11845 -12.58020 -12.42862 -12.03638 -11.67598 -11.52419 -11.33677 -11.14224 -11.08195 -10.73807 -9.81011 -8.44604 -6.53099 -0.18610 -0.11982 0.94648 1.23471 1.31402 1.41087 1.77455 1.94591 2.19778 2.39239 2.87732 3.54486 3.66647 4.08155 4.09725 4.17907 4.20088 4.43246 4.59295 4.75267 4.92935 4.95365 5.03241 5.18426 5.31717 5.34291 5.59643 5.64709 6.13133 6.50514 6.84820 7.11584 8.71221 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.031472 B = 0.006259 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.462724 B = 4472.563105 C = 4946.230139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.146 4.146 3 C 0.202 3.798 4 H 0.032 0.968 5 C -0.539 4.539 6 H 0.047 0.953 7 C 0.033 3.967 8 N -0.929 5.929 9 Si 0.936 3.064 10 H -0.250 1.250 11 H -0.284 1.284 12 H -0.255 1.255 13 O -0.343 6.343 14 C 0.519 3.481 15 O -0.522 6.522 16 C -0.216 4.216 17 C -0.182 4.182 18 C 0.010 3.990 19 O -0.160 6.160 20 C 0.097 3.903 21 Cl 0.059 6.941 22 H 0.048 0.952 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.275 0.725 28 H 0.179 0.821 29 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.751 4.757 -11.188 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.183 4.183 3 C 0.148 3.852 4 H 0.050 0.950 5 C -0.577 4.577 6 H 0.065 0.935 7 C -0.167 4.167 8 N -0.568 5.568 9 Si 0.761 3.239 10 H -0.175 1.175 11 H -0.211 1.211 12 H -0.179 1.179 13 O -0.259 6.259 14 C 0.365 3.635 15 O -0.413 6.413 16 C -0.220 4.220 17 C -0.201 4.201 18 C -0.055 4.055 19 O -0.057 6.057 20 C 0.017 3.983 21 Cl 0.088 6.912 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.196 0.804 29 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -15.095 4.868 -10.788 19.182 hybrid contribution 0.206 -0.387 1.136 1.218 sum -14.889 4.482 -9.652 18.301 Atomic orbital electron populations 1.21805 0.94549 1.02001 1.01398 1.22269 0.96475 0.97356 1.02215 1.20707 0.94024 0.89793 0.80679 0.95021 1.20955 0.89572 1.39879 1.07266 0.93453 1.25522 0.96052 0.95539 0.99578 1.69953 1.10332 1.45486 1.30988 0.86042 0.79390 0.80374 0.78138 1.17486 1.21089 1.17899 1.86551 1.35103 1.62998 1.41258 1.20265 0.79924 0.76138 0.87145 1.90810 1.55621 1.59321 1.35577 1.20336 0.97156 1.08584 0.95900 1.23176 1.03129 1.03975 0.89834 1.25029 0.82169 0.98677 0.99638 1.83788 1.41303 1.61128 1.19451 1.22525 0.92339 0.98898 0.84499 1.98480 1.50470 1.95617 1.46635 0.93266 0.93706 0.90669 0.90796 0.92131 0.91533 0.80365 0.70803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.31 8.56 71.98 0.62 -4.69 15 2 C -0.15 -6.45 5.15 30.59 0.16 -6.30 15 3 C 0.20 10.27 1.84 29.85 0.06 10.33 15 4 H 0.03 1.71 6.22 -2.39 -0.01 1.70 15 5 C -0.54 -31.72 9.48 25.60 0.24 -31.48 15 6 H 0.05 3.07 8.06 -2.91 -0.02 3.05 15 7 C 0.03 1.91 5.45 84.65 0.46 2.37 15 8 N -0.93 -56.87 13.96 21.45 0.30 -56.57 15 9 Si 0.94 44.19 24.41 68.60 1.67 45.87 15 10 H -0.25 -10.86 6.83 99.48 0.68 -10.18 15 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 15 12 H -0.25 -11.77 6.53 99.48 0.65 -11.12 15 13 O -0.34 -16.06 9.72 -57.09 -0.55 -16.62 15 14 C 0.52 21.46 6.40 70.14 0.45 21.91 15 15 O -0.52 -22.80 12.84 19.65 0.25 -22.55 15 16 C -0.22 -7.00 6.32 -18.98 -0.12 -7.12 15 17 C -0.18 -4.36 11.05 23.66 0.26 -4.10 15 18 C 0.01 0.15 12.02 66.87 0.80 0.95 15 19 O -0.16 -3.39 10.53 3.60 0.04 -3.35 15 20 C 0.10 2.68 7.99 67.47 0.54 3.22 15 21 Cl 0.06 1.58 27.91 -2.72 -0.08 1.51 15 22 H 0.05 1.93 7.79 -2.38 -0.02 1.91 15 23 H 0.04 1.69 6.06 -2.39 -0.01 1.67 15 24 H 0.07 2.34 8.14 -2.39 -0.02 2.32 15 25 H 0.07 3.17 8.14 -2.38 -0.02 3.15 15 26 H 0.06 2.71 3.21 -2.39 -0.01 2.70 15 27 H 0.28 15.55 8.31 -92.70 -0.77 14.78 15 28 H 0.18 3.99 8.06 -2.91 -0.02 3.97 15 29 H 0.28 0.91 8.06 -2.91 -0.02 0.89 15 Total: -1.00 -70.36 266.14 6.20 -64.16 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: 1.10 Total: 2.46 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 3.47 Total: -14.90 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.30 Total: -56.57 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -0.26 Total: -42.52 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.67 Total: 45.87 kcal Atomic # 17 Polarization: 1.58 SS G_CDS: -0.08 Total: 1.51 kcal Total: -70.36 6.20 -64.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193019259.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.136 kcal (2) G-P(sol) polarization free energy of solvation -70.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds