Wall clock time and date at job start Mon Mar 30 2020 07:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 O 1.45200 * 109.46937 * 64.99847 * 3 2 1 14 14 C 1.34794 * 117.00382 * 270.00223 * 13 3 2 15 15 O 1.21552 * 119.99924 * 0.02562 * 14 13 3 16 16 C 1.47059 * 120.00183 * 179.97438 * 14 13 3 17 17 C 1.47123 * 127.21474 * 359.71820 * 16 14 13 18 18 C 1.34094 * 105.96721 * 179.82934 * 17 16 14 19 19 O 1.34295 * 109.20246 * 0.42865 * 18 17 16 20 20 C 1.33656 * 110.92593 * 359.71227 * 19 18 17 21 21 Cl 1.73606 * 125.83010 * 180.02562 * 20 19 18 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 28 28 H 1.08005 * 127.01350 * 359.97438 * 17 16 14 29 29 H 1.08002 * 125.39471 * 180.14693 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 8 1.6559 2.0916 1.2407 14 6 0.4677 2.7281 1.2561 15 8 -0.2284 2.7397 0.2597 16 6 0.0132 3.4074 2.4786 17 6 0.7191 3.4873 3.7670 18 6 -0.0723 4.2052 4.5772 19 8 -1.1843 4.5563 3.9111 20 6 -1.1566 4.0924 2.6580 21 17 -2.3941 4.3210 1.4621 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.8292 -0.0609 -2.9500 28 1 1.6797 3.0576 4.0098 29 1 0.1476 4.4568 5.6043 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193019275.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:24 Heat of formation + Delta-G solvation = -76.509770 kcal Electronic energy + Delta-G solvation = -17104.306897 eV Core-core repulsion = 14020.691385 eV Total energy + Delta-G solvation = -3083.615511 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.049 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.63202 -39.32767 -37.02985 -35.71894 -33.55414 -32.92278 -31.30602 -29.63105 -27.32744 -24.32112 -22.91477 -21.72978 -20.32843 -19.53316 -18.24117 -16.65748 -16.55125 -16.42866 -15.58335 -15.07412 -14.72585 -14.28313 -13.42191 -13.00489 -12.84445 -12.76856 -12.24217 -12.03503 -11.45561 -11.31306 -11.24483 -11.17879 -10.93894 -10.64663 -10.28510 -9.89572 -9.80022 -9.67183 -9.35576 -8.80126 -8.71220 -8.43938 -6.17542 -4.24628 1.04152 1.14095 1.99940 3.26595 3.28318 3.30908 3.34603 3.58949 3.64874 4.33391 4.66321 5.06867 5.14762 5.24594 5.58067 5.91102 6.17449 6.26021 6.33242 6.48443 6.69643 6.89545 6.98717 7.19037 7.25045 7.62078 7.74969 7.94281 8.16372 8.63334 8.89197 9.40306 10.89235 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.030339 B = 0.005786 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.677352 B = 4838.399193 C = 5308.312643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.049 0.951 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 O -0.346 6.346 14 C 0.521 3.479 15 O -0.501 6.501 16 C -0.179 4.179 17 C -0.157 4.157 18 C -0.034 4.034 19 O -0.170 6.170 20 C 0.091 3.909 21 Cl 0.057 6.943 22 H 0.032 0.968 23 H 0.033 0.967 24 H 0.054 0.946 25 H 0.041 0.959 26 H 0.109 0.891 27 H 0.267 0.733 28 H 0.173 0.827 29 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.436 5.994 11.368 14.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.262 6.262 14 C 0.365 3.635 15 O -0.392 6.392 16 C -0.183 4.183 17 C -0.176 4.176 18 C -0.099 4.099 19 O -0.068 6.068 20 C 0.013 3.987 21 Cl 0.086 6.914 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.127 0.873 27 H 0.077 0.923 28 H 0.190 0.810 29 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -7.917 6.046 10.865 14.741 hybrid contribution 0.882 -0.129 -0.314 0.945 sum -7.036 5.917 10.551 13.994 Atomic orbital electron populations 1.21861 0.98328 0.99010 1.00825 1.22022 0.92682 0.99295 1.03358 1.20715 0.95001 0.88763 0.78497 0.93345 1.20991 0.89606 1.39087 1.06278 0.91380 1.24872 0.99194 0.94762 0.95043 1.69877 1.35463 1.37729 1.09452 0.86342 0.83909 0.78472 0.77450 1.19957 1.21050 1.20002 1.86549 1.33163 1.62336 1.44182 1.19618 0.81355 0.76844 0.85684 1.90840 1.55442 1.58483 1.34451 1.20514 0.95147 1.06605 0.96045 1.23018 1.02010 1.01752 0.90843 1.23961 0.84777 1.02569 0.98635 1.83703 1.40436 1.61941 1.20694 1.22599 0.93003 0.99573 0.83569 1.98480 1.50785 1.95726 1.46376 0.94936 0.94836 0.92736 0.93977 0.87300 0.92325 0.80998 0.76572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.56 37.16 0.32 -2.85 15 2 C -0.14 -3.38 5.49 -26.73 -0.15 -3.52 15 3 C 0.22 5.92 2.25 -27.89 -0.06 5.86 15 4 H 0.05 1.42 7.16 -51.93 -0.37 1.05 15 5 C -0.52 -14.52 8.90 -34.44 -0.31 -14.83 15 6 H 0.07 1.86 7.81 -52.48 -0.41 1.45 15 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 15 8 N -0.89 -24.95 11.29 55.43 0.63 -24.32 15 9 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 15 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 15 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 13 O -0.35 -8.30 9.72 -40.75 -0.40 -8.70 15 14 C 0.52 11.33 6.40 34.31 0.22 11.55 15 15 O -0.50 -11.68 12.84 -19.31 -0.25 -11.93 15 16 C -0.18 -3.13 6.32 -103.26 -0.65 -3.78 15 17 C -0.16 -2.12 11.05 -37.44 -0.41 -2.53 15 18 C -0.03 -0.35 12.02 29.27 0.35 0.00 15 19 O -0.17 -2.19 10.53 7.43 0.08 -2.11 15 20 C 0.09 1.41 7.99 30.19 0.24 1.65 15 21 Cl 0.06 0.85 27.92 -51.86 -1.45 -0.60 15 22 H 0.03 0.70 6.06 -51.93 -0.31 0.39 15 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 24 H 0.05 1.26 7.79 -51.93 -0.40 0.86 15 25 H 0.04 1.01 8.14 -51.93 -0.42 0.59 15 26 H 0.11 2.93 5.95 -51.93 -0.31 2.62 15 27 H 0.27 7.09 8.31 -40.82 -0.34 6.76 15 28 H 0.17 2.09 8.06 -52.48 -0.42 1.66 15 29 H 0.22 1.14 8.06 -52.49 -0.42 0.72 15 LS Contribution 272.91 15.07 4.11 4.11 Total: -1.00 -30.35 272.91 -5.48 -35.82 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -2.64 Total: -1.35 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -0.55 Total: -6.83 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.63 Total: -24.32 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.57 Total: -22.74 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: 0.85 SS G_CDS: -1.45 Total: -0.60 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.35 -5.48 -35.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193019275.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.686 kcal (2) G-P(sol) polarization free energy of solvation -30.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds