Wall clock time and date at job start Mon Mar 30 2020 07:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 O 1.45200 * 109.46937 * 64.99847 * 3 2 1 14 14 C 1.34794 * 117.00382 * 270.00223 * 13 3 2 15 15 O 1.21552 * 119.99924 * 0.02562 * 14 13 3 16 16 C 1.47059 * 120.00183 * 179.97438 * 14 13 3 17 17 C 1.47123 * 127.21474 * 359.71820 * 16 14 13 18 18 C 1.34094 * 105.96721 * 179.82934 * 17 16 14 19 19 O 1.34295 * 109.20246 * 0.42865 * 18 17 16 20 20 C 1.33656 * 110.92593 * 359.71227 * 19 18 17 21 21 Cl 1.73606 * 125.83010 * 180.02562 * 20 19 18 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 28 28 H 1.08005 * 127.01350 * 359.97438 * 17 16 14 29 29 H 1.08002 * 125.39471 * 180.14693 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 8 1.6559 2.0916 1.2407 14 6 0.4677 2.7281 1.2561 15 8 -0.2284 2.7397 0.2597 16 6 0.0132 3.4074 2.4786 17 6 0.7191 3.4873 3.7670 18 6 -0.0723 4.2052 4.5772 19 8 -1.1843 4.5563 3.9111 20 6 -1.1566 4.0924 2.6580 21 17 -2.3941 4.3210 1.4621 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.8292 -0.0609 -2.9500 28 1 1.6797 3.0576 4.0098 29 1 0.1476 4.4568 5.6043 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193019275.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:23 Heat of formation + Delta-G solvation = -94.423110 kcal Electronic energy + Delta-G solvation = -17105.083677 eV Core-core repulsion = 14020.691385 eV Total energy + Delta-G solvation = -3084.392292 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.049 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.72057 -41.11547 -38.22399 -37.56458 -35.50074 -34.18750 -33.27078 -30.73707 -29.34799 -26.00023 -24.73446 -22.90112 -21.93650 -21.16037 -19.66695 -18.58375 -18.14897 -17.68523 -17.08876 -16.83231 -16.45187 -15.64716 -14.99293 -14.72053 -14.35152 -13.97059 -13.93761 -13.37002 -13.30488 -13.27140 -13.11405 -12.79277 -12.55036 -12.41170 -12.14058 -11.75898 -11.51152 -11.33397 -11.05999 -10.82041 -10.51470 -9.79481 -8.25992 -6.42871 -0.15052 -0.10339 0.97276 1.42767 1.46516 1.54284 1.89271 2.01264 2.36593 2.48188 3.03710 3.57677 3.78536 4.11040 4.36646 4.39462 4.40569 4.60506 4.76789 4.84611 5.08782 5.20325 5.22015 5.36379 5.51568 5.64819 5.67670 5.95718 6.10801 6.60849 6.96320 7.28142 8.80710 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.030339 B = 0.005786 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.677352 B = 4838.399193 C = 5308.312643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.129 4.129 3 C 0.226 3.774 4 H 0.009 0.991 5 C -0.550 4.550 6 H 0.066 0.934 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.981 3.019 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.269 1.269 13 O -0.353 6.353 14 C 0.516 3.484 15 O -0.527 6.527 16 C -0.215 4.215 17 C -0.181 4.181 18 C 0.009 3.991 19 O -0.160 6.160 20 C 0.093 3.907 21 Cl 0.056 6.944 22 H 0.033 0.967 23 H 0.061 0.939 24 H 0.037 0.963 25 H 0.046 0.954 26 H 0.088 0.912 27 H 0.271 0.729 28 H 0.181 0.819 29 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.955 6.460 13.581 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.026 0.974 5 C -0.588 4.588 6 H 0.085 0.915 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.804 3.196 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.194 1.194 13 O -0.270 6.270 14 C 0.361 3.639 15 O -0.419 6.419 16 C -0.219 4.219 17 C -0.200 4.200 18 C -0.056 4.056 19 O -0.057 6.057 20 C 0.014 3.986 21 Cl 0.085 6.915 22 H 0.052 0.948 23 H 0.080 0.920 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.199 0.801 29 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -7.457 6.521 13.098 16.422 hybrid contribution 0.662 -0.209 -0.933 1.163 sum -6.795 6.313 12.165 15.297 Atomic orbital electron populations 1.21707 0.96356 1.00558 1.00039 1.21869 0.94391 0.98043 1.02396 1.20426 0.94622 0.89265 0.78362 0.97361 1.21284 0.90361 1.40127 1.07004 0.91541 1.25787 1.04202 0.93838 0.94297 1.70003 1.37512 1.37825 1.09826 0.85265 0.77693 0.78745 0.77891 1.18797 1.20287 1.19449 1.86524 1.34770 1.62965 1.42694 1.20300 0.80234 0.76276 0.87043 1.90812 1.55747 1.59418 1.35897 1.20420 0.97127 1.08294 0.96019 1.23180 1.03213 1.03950 0.89656 1.25052 0.82141 0.98717 0.99642 1.83779 1.41337 1.61204 1.19409 1.22522 0.92390 0.99229 0.84507 1.98478 1.50583 1.95644 1.46798 0.94776 0.91992 0.94400 0.93548 0.89382 0.92019 0.80123 0.70664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.56 71.98 0.62 -5.20 15 2 C -0.13 -6.59 5.49 30.59 0.17 -6.42 15 3 C 0.23 12.50 2.25 29.85 0.07 12.57 15 4 H 0.01 0.53 7.16 -2.39 -0.02 0.52 15 5 C -0.55 -31.34 8.90 25.60 0.23 -31.11 15 6 H 0.07 3.70 7.81 -2.91 -0.02 3.67 15 7 C 0.02 1.03 5.29 84.66 0.45 1.48 15 8 N -0.91 -52.39 11.29 21.45 0.24 -52.15 15 9 Si 0.98 42.79 29.54 68.60 2.03 44.82 15 10 H -0.26 -10.98 7.11 99.48 0.71 -10.27 15 11 H -0.28 -11.71 7.11 99.48 0.71 -11.00 15 12 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 13 O -0.35 -17.46 9.72 -57.05 -0.55 -18.01 15 14 C 0.52 23.02 6.40 70.14 0.45 23.47 15 15 O -0.53 -25.53 12.84 19.67 0.25 -25.27 15 16 C -0.21 -7.40 6.32 -18.98 -0.12 -7.52 15 17 C -0.18 -4.48 11.05 23.66 0.26 -4.22 15 18 C 0.01 0.15 12.02 66.87 0.80 0.95 15 19 O -0.16 -3.61 10.53 3.66 0.04 -3.57 15 20 C 0.09 2.75 7.99 67.47 0.54 3.29 15 21 Cl 0.06 1.64 27.92 -2.72 -0.08 1.57 15 22 H 0.03 1.49 6.06 -2.39 -0.01 1.47 15 23 H 0.06 2.39 8.14 -2.39 -0.02 2.37 15 24 H 0.04 1.79 7.79 -2.38 -0.02 1.78 15 25 H 0.05 2.27 8.14 -2.39 -0.02 2.25 15 26 H 0.09 4.88 5.95 -2.39 -0.01 4.86 15 27 H 0.27 14.54 8.31 -92.71 -0.77 13.77 15 28 H 0.18 4.05 8.06 -2.91 -0.02 4.03 15 29 H 0.28 1.00 8.06 -2.91 -0.02 0.98 15 Total: -1.00 -68.25 272.91 6.57 -61.69 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 1.18 Total: 3.66 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 3.46 Total: -12.72 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.24 Total: -52.15 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -0.26 Total: -46.86 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 17 Polarization: 1.64 SS G_CDS: -0.08 Total: 1.57 kcal Total: -68.25 6.57 -61.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193019275.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.736 kcal (2) G-P(sol) polarization free energy of solvation -68.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds