Wall clock time and date at job start Mon Mar 30 2020 06:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39854 * 126.04802 * 2 1 4 4 N 1.30841 * 108.21704 * 179.85521 * 3 2 1 5 5 N 1.40076 * 108.22633 * 0.40420 * 4 3 2 6 6 C 1.46507 * 126.03537 * 179.76326 * 5 4 3 7 7 C 1.53002 * 109.46809 * 269.97523 * 6 5 4 8 8 C 1.50704 * 109.46730 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00132 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99779 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99765 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99924 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.46868 * 90.00099 * 12 10 8 14 14 H 1.48498 * 109.46915 * 210.00049 * 12 10 8 15 15 H 1.48500 * 109.47086 * 330.00201 * 12 10 8 16 16 C 1.34981 * 107.92825 * 359.74243 * 5 4 3 17 17 Br 1.89101 * 126.13876 * 179.97438 * 16 5 4 18 18 H 1.09002 * 109.47152 * 269.68935 * 1 2 3 19 19 H 1.09001 * 109.46980 * 149.69036 * 1 2 3 20 20 H 1.09004 * 109.47113 * 29.69017 * 1 2 3 21 21 H 1.08002 * 125.89214 * 0.02562 * 3 2 1 22 22 H 1.09000 * 109.46651 * 29.97214 * 6 5 4 23 23 H 1.08989 * 109.47045 * 149.97597 * 6 5 4 24 24 H 1.08992 * 109.47312 * 299.99624 * 7 6 5 25 25 H 1.09006 * 109.47363 * 59.99960 * 7 6 5 26 26 H 0.97003 * 119.99350 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1308 0.0000 4 7 3.5756 0.7301 0.0031 5 7 3.5853 -0.6706 -0.0041 6 6 4.7759 -1.5243 -0.0085 7 6 5.1901 -1.8144 -1.4525 8 6 6.4152 -2.6920 -1.4570 9 1 6.8547 -3.0105 -0.5233 10 6 6.9750 -3.0882 -2.6531 11 7 6.4401 -2.6998 -3.7901 12 14 8.4941 -4.1754 -2.6587 13 1 8.0817 -5.6019 -2.6644 14 1 9.3032 -3.8891 -3.8705 15 1 9.3048 -3.8993 -1.4456 16 6 2.3039 -1.0950 -0.0060 17 35 1.7254 -2.8953 -0.0158 18 1 -0.3633 -0.0056 1.0277 19 1 -0.3633 -0.8872 -0.5186 20 1 -0.3633 0.8928 -0.5090 21 1 1.9952 2.1576 0.0004 22 1 5.5898 -1.0151 0.5076 23 1 4.5527 -2.4616 0.5008 24 1 4.3762 -2.3235 -1.9687 25 1 5.4133 -0.8769 -1.9619 26 1 6.8338 -2.9789 -4.6315 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212193362.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:37 Heat of formation + Delta-G solvation = 62.704441 kcal Electronic energy + Delta-G solvation = -11832.616830 eV Core-core repulsion = 9572.903165 eV Total energy + Delta-G solvation = -2259.713665 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.90146 -34.57472 -32.64815 -32.25225 -30.41584 -29.02422 -26.29402 -24.57626 -21.89621 -20.15733 -19.77411 -16.82171 -15.83797 -15.00106 -14.43951 -14.11162 -13.65977 -13.01412 -12.82568 -12.63830 -12.26625 -11.82444 -11.47677 -11.05171 -10.95036 -10.77946 -10.54403 -10.15914 -10.05491 -10.00172 -9.36004 -8.78602 -8.47762 -7.99029 -6.11922 -4.17415 1.46471 2.02178 2.94709 3.05725 3.26339 3.33000 3.36112 4.37214 4.87443 5.24491 5.32119 5.46028 5.68255 5.81943 5.97656 6.07572 6.14885 6.22049 6.44287 6.86240 7.11760 7.48341 7.54733 7.84268 7.97217 8.18098 8.87532 9.47438 10.99326 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.032034 B = 0.007127 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.856077 B = 3928.037250 C = 4474.267513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.218 4.218 3 C 0.036 3.964 4 N -0.271 5.271 5 N -0.328 5.328 6 C 0.122 3.878 7 C 0.015 3.985 8 C -0.527 4.527 9 H 0.060 0.940 10 C 0.062 3.938 11 N -0.889 5.889 12 Si 0.898 3.102 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.272 1.272 16 C 0.074 3.926 17 Br 0.013 6.987 18 H 0.061 0.939 19 H 0.063 0.937 20 H 0.065 0.935 21 H 0.184 0.816 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.345 1.876 8.226 14.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.233 4.233 3 C -0.149 4.149 4 N -0.095 5.095 5 N -0.111 5.111 6 C 0.003 3.997 7 C -0.023 4.023 8 C -0.566 4.566 9 H 0.078 0.922 10 C -0.140 4.140 11 N -0.527 5.527 12 Si 0.725 3.275 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.197 1.197 16 C -0.134 4.134 17 Br 0.096 6.904 18 H 0.080 0.920 19 H 0.082 0.918 20 H 0.084 0.916 21 H 0.201 0.799 22 H 0.108 0.892 23 H 0.104 0.896 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.145 1.480 8.040 13.822 hybrid contribution 0.209 -0.471 -0.205 0.554 sum -10.936 1.009 7.835 13.491 Atomic orbital electron populations 1.20099 0.89033 1.02387 1.01548 1.19855 0.97038 0.90452 1.15942 1.23634 0.89892 0.99348 1.01977 1.77445 1.20830 0.88671 1.22544 1.49303 1.04934 1.04425 1.52437 1.22486 0.82421 0.91097 1.03731 1.19453 0.97161 0.97904 0.87800 1.20959 1.11449 1.31342 0.92808 0.92189 1.24986 0.97444 0.96148 0.95437 1.69977 1.40522 1.44759 0.97419 0.86502 0.82624 0.80663 0.77704 1.20481 1.21077 1.19702 1.22674 0.88167 0.92653 1.09935 1.96722 1.87920 1.08025 1.97763 0.92038 0.91846 0.91650 0.79924 0.89244 0.89564 0.95605 0.95526 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.16 36.01 0.37 -0.49 15 2 C -0.22 -3.45 6.10 -105.02 -0.64 -4.09 15 3 C 0.04 0.58 11.96 -17.37 -0.21 0.37 15 4 N -0.27 -5.35 12.57 30.62 0.39 -4.96 15 5 N -0.33 -6.65 3.61 -59.58 -0.22 -6.86 15 6 C 0.12 2.58 6.19 -4.04 -0.02 2.56 15 7 C 0.01 0.38 5.30 -27.88 -0.15 0.24 15 8 C -0.53 -14.50 9.11 -34.44 -0.31 -14.81 15 9 H 0.06 1.57 7.74 -52.49 -0.41 1.16 15 10 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 11 N -0.89 -26.48 13.29 55.43 0.74 -25.75 15 12 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 15 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 14 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 16 C 0.07 1.33 7.34 -17.17 -0.13 1.21 15 17 Br 0.01 0.21 32.77 -68.01 -2.23 -2.02 15 18 H 0.06 0.63 8.14 -51.93 -0.42 0.21 15 19 H 0.06 0.74 7.76 -51.93 -0.40 0.33 15 20 H 0.06 0.65 8.14 -51.93 -0.42 0.22 15 21 H 0.18 2.15 8.06 -52.49 -0.42 1.73 15 22 H 0.09 1.84 8.14 -51.93 -0.42 1.42 15 23 H 0.09 1.71 7.66 -51.94 -0.40 1.31 15 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 15 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 LS Contribution 254.95 15.07 3.84 3.84 Total: -1.00 -30.54 254.95 -6.57 -37.11 By element: Atomic # 1 Polarization: -1.33 SS G_CDS: -2.88 Total: -4.21 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -1.19 Total: -13.36 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.91 Total: -37.57 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 35 Polarization: 0.21 SS G_CDS: -2.23 Total: -2.02 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.54 -6.57 -37.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212193362.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.812 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds